CK933311

Overview
NameCK933311
Unique NameCK933311
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length944
Libraries
Library NameType
Developing fruit juice sac at 38 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CK933311 vs. ExPASy Swiss-Prot
Match: PSA7A_ORYSJ (Proteasome subunit alpha type-7-A OS=Oryza sativa subsp. japonica GN=Os08g0548900 PE=2 SV=1)

HSP 1 Score: 110.538 bits (275), Expect = 1.404e-23
Identity = 58/173 (33.53%), Postives = 94/173 (54.34%), Query Frame = 2
Query:   77 YDLSVTTFSPDGRVFQIEYAAKAVDNSGTVIGIKCKDGIVMGVEKLIASKMMLPGSNRRIHSVHRHSGMAVAGLAADGRQIVTRAKSEATNYESVYGEPIPVKELAQRVASYVHLCTLYWWLRPFGCGVILGGYD--RDGPQLYMIEPSGISYRYFGAAIGKGRQAAKTEIEK 589
            YD ++T FSPDG +FQ+EYA +AV      +G++  D +V+GVEK    K+    S R+I S+  H  +A AGL AD R ++ RA+ E  ++     +P+ V+ + + +A      T    +RPFG   ++ G+D   + P LY  +PSG    +   A G+   + +  +EK
Sbjct:    4 YDRAITVFSPDGHLFQVEYALEAVRKGNAAVGVRGTDTVVLGVEKKSTPKLQDSRSMRKIASLDTHIALACAGLKADARVLINRARVECQSHRLTVEDPVTVEYITRYIAGLQQKYTQSGGVRPFGLSTLIVGFDPYTEKPALYQTDPSGTFSAWKANATGRNSNSMREFLEK 176          
BLAST of CK933311 vs. ExPASy Swiss-Prot
Match: PSA7A_ORYSI (Proteasome subunit alpha type-7-A OS=Oryza sativa subsp. indica GN=OsI_029135 PE=2 SV=2)

HSP 1 Score: 110.538 bits (275), Expect = 1.404e-23
Identity = 58/173 (33.53%), Postives = 94/173 (54.34%), Query Frame = 2
Query:   77 YDLSVTTFSPDGRVFQIEYAAKAVDNSGTVIGIKCKDGIVMGVEKLIASKMMLPGSNRRIHSVHRHSGMAVAGLAADGRQIVTRAKSEATNYESVYGEPIPVKELAQRVASYVHLCTLYWWLRPFGCGVILGGYD--RDGPQLYMIEPSGISYRYFGAAIGKGRQAAKTEIEK 589
            YD ++T FSPDG +FQ+EYA +AV      +G++  D +V+GVEK    K+    S R+I S+  H  +A AGL AD R ++ RA+ E  ++     +P+ V+ + + +A      T    +RPFG   ++ G+D   + P LY  +PSG    +   A G+   + +  +EK
Sbjct:    4 YDRAITVFSPDGHLFQVEYALEAVRKGNAAVGVRGTDTVVLGVEKKSTPKLQDSRSMRKIASLDTHIALACAGLKADARVLINRARVECQSHRLTVEDPVTVEYITRYIAGLQQKYTQSGGVRPFGLSTLIVGFDPYTEKPALYQTDPSGTFSAWKANATGRNSNSMREFLEK 176          
BLAST of CK933311 vs. ExPASy Swiss-Prot
Match: PSA6_TOBAC (Proteasome subunit alpha type-6 OS=Nicotiana tabacum GN=PAA1 PE=2 SV=1)

HSP 1 Score: 110.538 bits (275), Expect = 1.404e-23
Identity = 60/176 (34.09%), Postives = 101/176 (57.39%), Query Frame = 2
Query:   68 GTGYDLSVTTFSPDGRVFQIEYAAKAVDNSG-TVIGIKCKDGIVMGVEKLIASKMMLPGSNRRIHSVHRHSGMAVAGLAADGRQIVTRAKSEATNYESVYGEPIPVKELAQRVASYVHLCTLYWWLRPFG-CGVILGGYDRDGPQLYMIEPSGISYRYFGAAIGKGRQAAKTEIEK 589
            G GYD  +T FSP+GR+FQ+EYA KAV  +G T IG++ KD + +  +K +  K++   S   +  + ++ G+   G+ AD R +V +A++EA  +   YG  +PV  L++ +A    + T + ++RP G   +ILG  +  GPQL+  +P+G  + +   + G   Q A   +EK
Sbjct:    6 GGGYDRHITIFSPEGRLFQVEYAFKAVKAAGITSIGVRGKDSVCVVTQKKVPDKLLDQTSVSHLFPITKYLGLLATGMTADARTLVQQARNEAAEFRFKYGYEMPVDVLSKWIADKSQVYTQHAYMRPLGVVAMILGIDEEKGPQLFKCDPAGHFFGHKATSAGSKEQEAINFLEK 181          
BLAST of CK933311 vs. ExPASy Swiss-Prot
Match: PSA6_SOYBN (Proteasome subunit alpha type-6 OS=Glycine max GN=PAA1 PE=2 SV=2)

HSP 1 Score: 110.153 bits (274), Expect = 1.834e-23
Identity = 62/176 (35.23%), Postives = 100/176 (56.82%), Query Frame = 2
Query:   68 GTGYDLSVTTFSPDGRVFQIEYAAKAVDNSG-TVIGIKCKDGIVMGVEKLIASKMMLPGSNRRIHSVHRHSGMAVAGLAADGRQIVTRAKSEATNYESVYGEPIPVKELAQRVASYVHLCTLYWWLRPFG-CGVILGGYDRDGPQLYMIEPSGISYRYFGAAIGKGRQAAKTEIEK 589
            G GY+  +T FSP+GR+FQ+EYA KAV  +G T IG++ KD I +   K +  K++   S   +  + ++ G+   G+ AD R +V +A++EA  +   YG  +PV  LA+ +A    + T + ++RP G   ++LG  D  GPQLY  +P+G  + +   + G   Q A   +EK
Sbjct:    6 GGGYNRHITIFSPEGRLFQVEYAFKAVKAAGITSIGVRGKDSICVVTHKKVPDKLLDNTSVTHLFPITKYLGLLATGMTADARTLVQQARNEAAEFRFTYGYEMPVDVLAKWIADKSQVYTQHAYMRPLGVVAMVLGIDDEYGPQLYKCDPAGHYFGHKATSAGLKDQEAINFLEK 181          
BLAST of CK933311 vs. ExPASy Swiss-Prot
Match: PSA7_CICAR (Proteasome subunit alpha type-7 OS=Cicer arietinum GN=PAD1 PE=2 SV=1)

HSP 1 Score: 109.768 bits (273), Expect = 2.395e-23
Identity = 57/173 (32.95%), Postives = 94/173 (54.34%), Query Frame = 2
Query:   77 YDLSVTTFSPDGRVFQIEYAAKAVDNSGTVIGIKCKDGIVMGVEKLIASKMMLPGSNRRIHSVHRHSGMAVAGLAADGRQIVTRAKSEATNYESVYGEPIPVKELAQRVASYVHLCTLYWWLRPFGCGVILGGYD--RDGPQLYMIEPSGISYRYFGAAIGKGRQAAKTEIEK 589
            YD ++T FSPDG +FQ+EYA +AV      +G++  D +V+GVEK   +K+    S R+I ++  H  +A AGL AD R ++ RA+ E  ++     +P+ V+ + + +A      T    +RPFG   ++ G+D     P LY  +PSG    +   A G+   + +  +EK
Sbjct:    4 YDRAITVFSPDGHLFQVEYALEAVRKGNAAVGVRGTDNVVLGVEKKSTAKLQDTRSVRKIVNLDDHIALACAGLKADARVLINRARVECQSHRLTVEDPVTVEYITRYIAGLQQKYTQSGGVRPFGLSTLIVGFDPYTGSPSLYQTDPSGTFSAWKANATGRNSNSIREFLEK 176          
BLAST of CK933311 vs. ExPASy Swiss-Prot
Match: PSA7B_ORYSJ (Proteasome subunit alpha type-7-B OS=Oryza sativa subsp. japonica GN=PAD1 PE=2 SV=1)

HSP 1 Score: 108.997 bits (271), Expect = 4.086e-23
Identity = 58/173 (33.53%), Postives = 93/173 (53.76%), Query Frame = 2
Query:   77 YDLSVTTFSPDGRVFQIEYAAKAVDNSGTVIGIKCKDGIVMGVEKLIASKMMLPGSNRRIHSVHRHSGMAVAGLAADGRQIVTRAKSEATNYESVYGEPIPVKELAQRVASYVHLCTLYWWLRPFGCGVILGGYD--RDGPQLYMIEPSGISYRYFGAAIGKGRQAAKTEIEK 589
            YD ++T FSPDG +FQ+EYA +AV      +G++  D +V+GVEK    K+    S R+I S+  H  +A AGL AD R ++ RA+ E  ++     + + V+ + + +A      T    +RPFG   ++ G+D   D P LY  +PSG    +   A G+   + +  +EK
Sbjct:    4 YDRAITVFSPDGHLFQVEYALEAVRKGNAAVGVRGSDTVVLGVEKKSTPKLQDSRSVRKIASLDTHIALACAGLKADARVLINRARVECQSHRLTVEDAVTVEYITRYIAGLQQKYTQSGGVRPFGLSTLIVGFDPYTDKPALYQTDPSGTFSAWKANATGRNSNSMREFLEK 176          
BLAST of CK933311 vs. ExPASy Swiss-Prot
Match: PSA7B_ORYSI (Proteasome subunit alpha type-7-B OS=Oryza sativa subsp. indica GN=PAD1 PE=2 SV=1)

HSP 1 Score: 108.997 bits (271), Expect = 4.086e-23
Identity = 58/173 (33.53%), Postives = 93/173 (53.76%), Query Frame = 2
Query:   77 YDLSVTTFSPDGRVFQIEYAAKAVDNSGTVIGIKCKDGIVMGVEKLIASKMMLPGSNRRIHSVHRHSGMAVAGLAADGRQIVTRAKSEATNYESVYGEPIPVKELAQRVASYVHLCTLYWWLRPFGCGVILGGYD--RDGPQLYMIEPSGISYRYFGAAIGKGRQAAKTEIEK 589
            YD ++T FSPDG +FQ+EYA +AV      +G++  D +V+GVEK    K+    S R+I S+  H  +A AGL AD R ++ RA+ E  ++     + + V+ + + +A      T    +RPFG   ++ G+D   D P LY  +PSG    +   A G+   + +  +EK
Sbjct:    4 YDRAITVFSPDGHLFQVEYALEAVRKGNAAVGVRGSDTVVLGVEKKSTPKLQDSRSVRKIASLDTHIALACAGLKADARVLINRARVECQSHRLTVEDAVTVEYITRYIAGLQQKYTQSGGVRPFGLSTLIVGFDPYTDKPALYQTDPSGTFSAWKANATGRNSNSMREFLEK 176          
BLAST of CK933311 vs. ExPASy Swiss-Prot
Match: PSA71_DROVI (Proteasome subunit alpha type-7-1 OS=Drosophila virilis GN=Pros28.1 PE=3 SV=1)

HSP 1 Score: 108.612 bits (270), Expect = 5.337e-23
Identity = 66/189 (34.92%), Postives = 105/189 (55.56%), Query Frame = 2
Query:   77 YDLSVTTFSPDGRVFQIEYAAKAVDNSGTVIGIKCKDGIVMGVEKLIASKMMLPGSNRRIHSVHRHSGMAVAGLAADGRQIVTRAKSEATNYESVYGEPIPVKELAQRVASYVHLCTLYWWLRPFGCGVILGGYDRDG-PQLYMIEPSGISYRYFGAAIGKGRQAAKTEIEK-LKLSEMTCRQGVIEVA 637
            YD +VT FSPDGR+ Q+EYA +AV    T +G++  + +V+GVEK   +K+    + R+I  V  H  MA AGL  D R ++ RA+ E  ++     +P+ ++ + + +A      T     RPFG   ++GG+D DG P L+  EPSGI Y Y   A G   +  +   EK  +  E++  +G +++A
Sbjct:    5 YDRAVTIFSPDGRLLQVEYAQEAVRKGSTAVGVRGGNCVVLGVEKKSVAKLQEDRTVRKI-CVLDHVVMAFAGL-TDARILINRAQVECQSHRLNVEDPVTLEYITRYIAQLKQKYTQSNGRRPFGISCLIGGFDADGSPYLFQTEPSGIFYEYKANATGCSAKTVREFFEKQYREEEVSTERGAVKLA 191          
BLAST of CK933311 vs. ExPASy Swiss-Prot
Match: PSA6_RAT (Proteasome subunit alpha type-6 OS=Rattus norvegicus GN=Psma6 PE=1 SV=1)

HSP 1 Score: 108.227 bits (269), Expect = 6.970e-23
Identity = 59/174 (33.91%), Postives = 98/174 (56.32%), Query Frame = 2
Query:   74 GYDLSVTTFSPDGRVFQIEYAAKAVDNSG-TVIGIKCKDGIVMGVEKLIASKMMLPGSNRRIHSVHRHSGMAVAGLAADGRQIVTRAKSEATNYESVYGEPIPVKELAQRVASYVHLCTLYWWLRPFGCGVILGGYDRD-GPQLYMIEPSGISYRYFGAAIGKGRQAAKTEIEK 589
            G+D  +T FSP+GR++Q+EYA KA++  G T + ++ KD  V+  +K +  K++   +   +  +  + G  + G+ AD R  V RA+ EA N++  YG  IPV  L +R+A    + T    +RP GC +IL G D + GPQ+Y  +P+G    +   A G  +  + + +EK
Sbjct:    8 GFDRHITIFSPEGRLYQVEYAFKAINQGGLTSVAVRGKDCAVIVTQKKVPDKLLDSSTVTHLFKITENIGCVMTGMTADSRSQVQRARYEAANWKYKYGYEIPVDMLCKRIADISQVYTQNAEMRPLGCCMILIGIDEEQGPQVYKCDPAGYYCGFKATAAGVKQTESTSFLEK 181          
BLAST of CK933311 vs. ExPASy Swiss-Prot
Match: PSA6_ORYSJ (Proteasome subunit alpha type-6 OS=Oryza sativa subsp. japonica GN=PAA1 PE=2 SV=1)

HSP 1 Score: 108.227 bits (269), Expect = 6.970e-23
Identity = 58/176 (32.95%), Postives = 101/176 (57.39%), Query Frame = 2
Query:   68 GTGYDLSVTTFSPDGRVFQIEYAAKAVDNSG-TVIGIKCKDGIVMGVEKLIASKMMLPGSNRRIHSVHRHSGMAVAGLAADGRQIVTRAKSEATNYESVYGEPIPVKELAQRVASYVHLCTLYWWLRPFGCGVILGGYDRD-GPQLYMIEPSGISYRYFGAAIGKGRQAAKTEIEK 589
            G GYD  +T FSP+GR++Q+EYA KAV ++G T IG++ KD + +  +K +  K++   S   +  + ++ G+   GL AD R +V +A++EA  +   +G  +PV  LA+ +A    + T + ++RP G   ++ GYD +   QL+  +P+G  + +   + G   Q A   +EK
Sbjct:    6 GAGYDRHITIFSPEGRLYQVEYAFKAVKSAGVTSIGVRGKDSVCVVTQKKVPDKLLDHTSVTHLFPITKYIGLLATGLTADARSLVYQARNEAAEFRFKWGYEMPVDVLAKWIADKAQVYTQHAYMRPLGVVAMVLGYDEEKNAQLFKCDPAGHFFGHKATSAGLKEQEAINFLEK 181          
The following BLAST results are available for this feature:
BLAST of CK933311 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 176
Match NameE-valueIdentityDescription
PSA7A_ORYSJ1.404e-2333.53Proteasome subunit alpha type-7-A OS=Oryza sativa ... [more]
PSA7A_ORYSI1.404e-2333.53Proteasome subunit alpha type-7-A OS=Oryza sativa ... [more]
PSA6_TOBAC1.404e-2334.09Proteasome subunit alpha type-6 OS=Nicotiana tabac... [more]
PSA6_SOYBN1.834e-2335.23Proteasome subunit alpha type-6 OS=Glycine max GN=... [more]
PSA7_CICAR2.395e-2332.95Proteasome subunit alpha type-7 OS=Cicer arietinum... [more]
PSA7B_ORYSJ4.086e-2333.53Proteasome subunit alpha type-7-B OS=Oryza sativa ... [more]
PSA7B_ORYSI4.086e-2333.53Proteasome subunit alpha type-7-B OS=Oryza sativa ... [more]
PSA71_DROVI5.337e-2334.92Proteasome subunit alpha type-7-1 OS=Drosophila vi... [more]
PSA6_RAT6.970e-2333.91Proteasome subunit alpha type-6 OS=Rattus norvegic... [more]
PSA6_ORYSJ6.970e-2332.95Proteasome subunit alpha type-6 OS=Oryza sativa su... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionCGF1004287_A11 Developing fruit juice sac at 38 DAFB Citrus sinensis cDNA clone JSJune0002_IIF_A11 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK933311 ID=CK933311; Name=CK933311; organism=Citrus sinensis; type=EST; length=944bp
GGGGGAAAGAGGATCGAATTGACTCACAAATCGAAAAAGAAAGAAGAGAG
CAAGAATGAGCAGCATAGGCACAGGCTACGATCTGTCGGTGACCACATTC
TCTCCCGACGGTCGCGTTTTCCAGATCGAATACGCCGCCAAAGCCGTCGA
CAACAGCGGGACTGTGATTGGAATTAAATGCAAAGATGGCATCGTTATGG
GAGTGGAGAAGCTAATAGCGTCGAAGATGATGTTGCCTGGTTCCAATAGA
AGAATCCATTCCGTTCATCGTCACTCCGGCATGGCTGTTGCAGGATTAGC
AGCAGATGGGAGACAAATTGTTACCAGGGCCAAGTCTGAAGCTACAAACT
ATGAAAGTGTATATGGCGAACCAATTCCTGTTAAAGAACTTGCTCAACGA
GTTGCTAGCTATGTGCATCTATGTACTCTATATTGGTGGCTCAGACCTTT
TGGATGTGGTGTAATTCTTGGAGGTTATGACAGAGATGGACCGCAATTGT
ATATGATTGAACCTTCTGGTATCTCCTATAGGTATTTTGGAGCTGCAATT
GGAAAGGGCAGGCAGGCTGCTAAAACAGAGATTGAAAAGTTGAAGCTTTC
TGAAATGACCTGCCGACAAGGGGTCATTGAAGTAGCCAAGATCATTTATG
GAGTGCACGATGAGGCTAAGGACAAGGCCTTTGAACTGGAAATGAGCTGG
GTCTGTGATGAATCAAACCGCCAGCATCAGAAGGTACCAGATGAGCTTCT
TGAGGAAGCTAAGGCAGCCGCCAGAGCAGCGTTGGAAGAGATGGATGCAG
ATTAGTGTAGCAGAGTTGATAATATTTGGTTACTAGTTTGATGCCATTTC
AGGGCTTGTCTTGGAATACTTTTCGAAACATTTTCAAAATATTTANNNAG
ATTGGTGGATTCTCTTAAAAAAAAAAAAANNNAAANNNANAAAA
back to top