CK933311

Overview
NameCK933311
Unique NameCK933311
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length944
Libraries
Library NameType
Developing fruit juice sac at 38 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CK933311 vs. ExPASy Swiss-Prot
Match: PSA1_MOUSE (Proteasome subunit alpha type-1 OS=Mus musculus GN=Psma1 PE=1 SV=1)

HSP 1 Score: 105.916 bits (263), Expect = 3.459e-22
Identity = 59/179 (32.96%), Postives = 91/179 (50.84%), Query Frame = 2
Query:   77 YDLSVTTFSPDGRVFQIEYAAKAVDNSGTVIGIKCKDGIVMGVEKLIASKMMLPGSNRRIHSVHRHSGMAVAGLAADGRQIVTRAKSEATNYESVYGEPIPVKELAQRVASYVHLCTLYWWLRPFGCGVILGGYDRDGPQLYMIEPSGISYRYFGAAIGKGRQAAKTEIEKLKLSEMTC 613
            YD  VT +SP GR+ QIEYA +AV      +G+K K   V+   K   S+  L    ++I  V  H G+++AGL AD R +    + E  +   V+  P+PV  L   + S   + T  +  RP+G G+++ GYD  GP ++   PS   +     +IG   Q+A+T +E+     M C
Sbjct:    6 YDNDVTVWSPQGRIHQIEYAMEAVKQGSATVGLKSKTHAVLVALKRAQSE--LAAHQKKILHVDNHIGISIAGLTADARLLCNFMRQECLDSRFVFDRPLPVSRLVSLIGSKTQIPTQRYGRRPYGVGLLIAGYDDMGPHIFQTCPSANYFDCRAMSIGARSQSARTYLERHMSEFMEC 182          
BLAST of CK933311 vs. ExPASy Swiss-Prot
Match: PSA1_MACFA (Proteasome subunit alpha type-1 OS=Macaca fascicularis GN=PSMA1 PE=2 SV=1)

HSP 1 Score: 105.916 bits (263), Expect = 3.459e-22
Identity = 59/179 (32.96%), Postives = 91/179 (50.84%), Query Frame = 2
Query:   77 YDLSVTTFSPDGRVFQIEYAAKAVDNSGTVIGIKCKDGIVMGVEKLIASKMMLPGSNRRIHSVHRHSGMAVAGLAADGRQIVTRAKSEATNYESVYGEPIPVKELAQRVASYVHLCTLYWWLRPFGCGVILGGYDRDGPQLYMIEPSGISYRYFGAAIGKGRQAAKTEIEKLKLSEMTC 613
            YD  VT +SP GR+ QIEYA +AV      +G+K K   V+   K   S+  L    ++I  V  H G+++AGL AD R +    + E  +   V+  P+PV  L   + S   + T  +  RP+G G+++ GYD  GP ++   PS   +     +IG   Q+A+T +E+     M C
Sbjct:    6 YDNDVTVWSPQGRIHQIEYAMEAVKQGSATVGLKSKTHAVLVALKRAQSE--LAAHRKKILHVDNHIGISIAGLTADARLLCNFMRQECLDSRFVFDRPLPVSRLVSLIGSKTQIPTQRYGRRPYGVGLLIAGYDDMGPHIFQTCPSANYFDCRAMSIGARSQSARTYLERHMSEFMEC 182          
BLAST of CK933311 vs. ExPASy Swiss-Prot
Match: PSA1_HUMAN (Proteasome subunit alpha type-1 OS=Homo sapiens GN=PSMA1 PE=1 SV=1)

HSP 1 Score: 105.916 bits (263), Expect = 3.459e-22
Identity = 59/179 (32.96%), Postives = 91/179 (50.84%), Query Frame = 2
Query:   77 YDLSVTTFSPDGRVFQIEYAAKAVDNSGTVIGIKCKDGIVMGVEKLIASKMMLPGSNRRIHSVHRHSGMAVAGLAADGRQIVTRAKSEATNYESVYGEPIPVKELAQRVASYVHLCTLYWWLRPFGCGVILGGYDRDGPQLYMIEPSGISYRYFGAAIGKGRQAAKTEIEKLKLSEMTC 613
            YD  VT +SP GR+ QIEYA +AV      +G+K K   V+   K   S+  L    ++I  V  H G+++AGL AD R +    + E  +   V+  P+PV  L   + S   + T  +  RP+G G+++ GYD  GP ++   PS   +     +IG   Q+A+T +E+     M C
Sbjct:    6 YDNDVTVWSPQGRIHQIEYAMEAVKQGSATVGLKSKTHAVLVALKRAQSE--LAAHQKKILHVDNHIGISIAGLTADARLLCNFMRQECLDSRFVFDRPLPVSRLVSLIGSKTQIPTQRYGRRPYGVGLLIAGYDDMGPHIFQTCPSANYFDCRAMSIGARSQSARTYLERHMSEFMEC 182          
BLAST of CK933311 vs. ExPASy Swiss-Prot
Match: PSA1_BOVIN (Proteasome subunit alpha type-1 OS=Bos taurus GN=PSMA1 PE=1 SV=1)

HSP 1 Score: 105.916 bits (263), Expect = 3.459e-22
Identity = 59/179 (32.96%), Postives = 91/179 (50.84%), Query Frame = 2
Query:   77 YDLSVTTFSPDGRVFQIEYAAKAVDNSGTVIGIKCKDGIVMGVEKLIASKMMLPGSNRRIHSVHRHSGMAVAGLAADGRQIVTRAKSEATNYESVYGEPIPVKELAQRVASYVHLCTLYWWLRPFGCGVILGGYDRDGPQLYMIEPSGISYRYFGAAIGKGRQAAKTEIEKLKLSEMTC 613
            YD  VT +SP GR+ QIEYA +AV      +G+K K   V+   K   S+  L    ++I  V  H G+++AGL AD R +    + E  +   V+  P+PV  L   + S   + T  +  RP+G G+++ GYD  GP ++   PS   +     +IG   Q+A+T +E+     M C
Sbjct:    6 YDNDVTVWSPQGRIHQIEYAMEAVKQGSATVGLKSKTHAVLVALKRAQSE--LAAHQKKILHVDNHIGISIAGLTADARLLCNFMRQECLDSRFVFDRPLPVSRLVSLIGSKTQIPTQRYGRRPYGVGLLIAGYDDMGPHIFQTCPSANYFDCRAMSIGARSQSARTYLERHMSEFMEC 182          
BLAST of CK933311 vs. ExPASy Swiss-Prot
Match: PSA1_RAT (Proteasome subunit alpha type-1 OS=Rattus norvegicus GN=Psma1 PE=1 SV=2)

HSP 1 Score: 105.531 bits (262), Expect = 4.518e-22
Identity = 59/179 (32.96%), Postives = 91/179 (50.84%), Query Frame = 2
Query:   77 YDLSVTTFSPDGRVFQIEYAAKAVDNSGTVIGIKCKDGIVMGVEKLIASKMMLPGSNRRIHSVHRHSGMAVAGLAADGRQIVTRAKSEATNYESVYGEPIPVKELAQRVASYVHLCTLYWWLRPFGCGVILGGYDRDGPQLYMIEPSGISYRYFGAAIGKGRQAAKTEIEKLKLSEMTC 613
            YD  VT +SP GR+ QIEYA +AV      +G+K K   V+   K   S+  L    ++I  V  H G+++AGL AD R +    + E  +   V+  P+PV  L   + S   + T  +  RP+G G+++ GYD  GP ++   PS   +     +IG   Q+A+T +E+     M C
Sbjct:    6 YDNDVTVWSPQGRIHQIEYAMEAVKQGSATVGLKSKTHAVLVALKRAQSE--LAAHQKKILHVDNHIGISIAGLTADARLLCNFMRQECLDSRFVFDRPLPVSRLVSLIGSKTQIPTQRYGRRPYGVGLLIAGYDDMGPHVFQTCPSANYFDCRAMSIGARSQSARTYLERHMSEFMQC 182          
BLAST of CK933311 vs. ExPASy Swiss-Prot
Match: PSA7A_ARATH (Proteasome subunit alpha type-7-A OS=Arabidopsis thaliana GN=PAD1 PE=1 SV=1)

HSP 1 Score: 104.76 bits (260), Expect = 7.706e-22
Identity = 56/173 (32.37%), Postives = 92/173 (53.18%), Query Frame = 2
Query:   77 YDLSVTTFSPDGRVFQIEYAAKAVDNSGTVIGIKCKDGIVMGVEKLIASKMMLPGSNRRIHSVHRHSGMAVAGLAADGRQIVTRAKSEATNYESVYGEPIPVKELAQRVASYVHLCTLYWWLRPFGCGVILGGYD--RDGPQLYMIEPSGISYRYFGAAIGKGRQAAKTEIEK 589
            YD ++T FSPDG +FQ+EYA +AV      +G++  D +V+ VEK    K+    S R+I S+  H  +A AGL AD R ++ +A+ E  ++     +P+ V+ + + +A      T    +RPFG   ++ G+D     P LY  +PSG    +   A G+   + +  +EK
Sbjct:    4 YDRAITVFSPDGHLFQVEYALEAVRKGNAAVGVRGTDTVVLAVEKKSTPKLQDSRSARKIVSLDNHIALACAGLKADARVLINKARIECQSHRLTLEDPVTVEYITRYIAGLQQKYTQSGGVRPFGLSTLIVGFDPYTRIPALYQTDPSGTFSAWKANATGRNSNSIREFLEK 176          
BLAST of CK933311 vs. ExPASy Swiss-Prot
Match: PSA72_DROME (Proteasome subunit alpha type-7-1A OS=Drosophila melanogaster GN=Pros28.1A PE=2 SV=2)

HSP 1 Score: 104.375 bits (259), Expect = 1.006e-21
Identity = 61/189 (32.28%), Postives = 100/189 (52.91%), Query Frame = 2
Query:   77 YDLSVTTFSPDGRVFQIEYAAKAVDNSGTVIGIKCKDGIVMGVEKLIASKMMLPGSNRRIHSVHRHSGMAVAGLAADGRQIVTRAKSEATNYESVYGEPIPVKELAQRVASYVHLCTLYWWLRPFGCGVILGGYDRDG-PQLYMIEPSGISYRYFGAAIGKGRQAAKTEIEKLKLS-EMTCRQGVIEVA 637
            Y  ++T FSPDG + Q+EYA +AV    T +G++  + +V+GVEK   S+M    + R+I  + RH  +A AGL AD R ++ R + E  ++   +   + ++ + + +A      T     RPFG   ++GG D DG  +L+  EPSGI + Y   A G+     +   EK     E+T +   I++A
Sbjct:    5 YGRALTIFSPDGHLLQVEYAQEAVRKGSTAVGVRGANCVVLGVEKSSVSEMQEDRTVRKISMLDRHVALAFAGLTADARILINRGQVECQSHRLNFENQVTLEYITRYLAQLKQKYTQCNGRRPFGISCLIGGIDADGSARLFHTEPSGIFHEYKATATGRWANTVREFFEKAYSDHEVTTKCDAIKLA 193          
BLAST of CK933311 vs. ExPASy Swiss-Prot
Match: PSA7_YEAST (Proteasome component PRE6 OS=Saccharomyces cerevisiae GN=PRE6 PE=1 SV=1)

HSP 1 Score: 103.99 bits (258), Expect = 1.314e-21
Identity = 56/176 (31.82%), Postives = 97/176 (55.11%), Query Frame = 2
Query:   71 TGYDLSVTTFSPDGRVFQIEYAAKAVDNSGTVIGIKCKDGIVMGVEKLIASKMM-LPGSNRRIHSVHRHSGMAVAGLAADGRQIVTRAKSEATNYESVYGEPIPVKELAQRVASYVHLCTLYWWLRPFGCGVILGGYD--RDGPQLYMIEPSGISYRYFGAAIGKGRQAAKTEIEK 589
            +GYD +++ FSPDG +FQ+EYA +AV      +G+K K+ +V+G E+    K+     +  ++  +  H  ++ +GL AD R ++ +A+ EA ++     +P+ V+ L + VA      T    +RPFG   ++ G+D   D P+LY  EPSGI   +    IG+  +  +  +EK
Sbjct:    2 SGYDRALSIFSPDGHIFQVEYALEAVKRGTCAVGVKGKNCVVLGCERRSTLKLQDTRITPSKVSKIDSHVVLSFSGLNADSRILIEKARVEAQSHRLTLEDPVTVEYLTRYVAGVQQRYTQSGGVRPFGVSTLIAGFDPRDDEPKLYQTEPSGIYSSWSAQTIGRNSKTVREFLEK 177          
BLAST of CK933311 vs. ExPASy Swiss-Prot
Match: PSA4_MOUSE (Proteasome subunit alpha type-4 OS=Mus musculus GN=Psma4 PE=1 SV=1)

HSP 1 Score: 103.605 bits (257), Expect = 1.717e-21
Identity = 63/218 (28.90%), Postives = 113/218 (51.83%), Query Frame = 2
Query:   77 YDLSVTTFSPDGRVFQIEYAAKAVDNSGTVIGIKCKDGIVMGVEKLIASKMM-LPGSNRRIHSVHRHSGMAVAGLAADGRQIVTRAKSEATNYESVYGEPIPVKELAQRVASYVHLCTLYWWLRPFGCGVILGGYDRD-GPQLYMIEPSGISYRYFGAAIGKGRQAAKTEIEK-LKLSEMTCRQGVIEVAKIIYGVHDEAKDKAFELEMSWVCDESNR 721
            YD   T FSP+GR++Q+EYA +A+ ++GT +GI   DG+++  E+    K++     + +I+ ++     +VAG+ +D   +    +  A  Y   Y EPIP ++L   +       T +   RPFG  ++  G+D+  G QLY  +PSG    +    IG    AA + +++  K  EMT +  +    K++    D +K  A ++E++ +  ES +
Sbjct:    5 YDSRTTIFSPEGRLYQVEYAMEAIGHAGTCLGILANDGVLLAAERRNIHKLLDEVFFSEKIYKLNEDMACSVAGITSDANVLTNELRLIAQRYLLQYQEPIPCEQLVTALCDIKQAYTQFGGKRPFGVSLLYIGWDKHYGFQLYQSDPSGNYGGWKATCIGNNSAAAVSMLKQDYKEGEMTLKSALALAVKVLNKTMDVSKLSAEKVEIATLTRESGK 222          
BLAST of CK933311 vs. ExPASy Swiss-Prot
Match: PSA4_SCHPO (Probable proteasome subunit alpha type-4 OS=Schizosaccharomyces pombe GN=SPAC13C5.01c PE=2 SV=1)

HSP 1 Score: 103.219 bits (256), Expect = 2.242e-21
Identity = 55/150 (36.67%), Postives = 85/150 (56.67%), Query Frame = 2
Query:   77 YDLSVTTFSPDGRVFQIEYAAKAVDNSGTVIGIKCKDGIVMGVEKLIASKMM-LPGSNRRIHSVHRHSGMAVAGLAADGRQIVTRAKSEATNYESVYGEPIPVKELAQRVASYVHLCTLYWWLRPFGCGVILGGYDR-DGPQLYMIEPSG 520
            YD   T FSP+GR++Q+EYA +A++++G  +GI  KDGIV+  EK + SK++    S  +++ +  +   AVAGL AD   ++  A+     Y   + E +P ++L +RV       T Y  LRPFG   +  G+D   G QL+   PSG
Sbjct:    5 YDSRTTIFSPEGRLYQVEYALEAINHAGVALGIVAKDGIVLAAEKKVTSKLLEQEESAEKLYHIGDNMLCAVAGLTADANILINYARRVGQQYLQTFNEEMPCEQLVRRVCDLKQGYTQYGGLRPFGVSFLYAGWDHIRGYQLFQSNPSG 154          
The following BLAST results are available for this feature:
BLAST of CK933311 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 176
Match NameE-valueIdentityDescription
PSA1_MOUSE3.459e-2232.96Proteasome subunit alpha type-1 OS=Mus musculus GN... [more]
PSA1_MACFA3.459e-2232.96Proteasome subunit alpha type-1 OS=Macaca fascicul... [more]
PSA1_HUMAN3.459e-2232.96Proteasome subunit alpha type-1 OS=Homo sapiens GN... [more]
PSA1_BOVIN3.459e-2232.96Proteasome subunit alpha type-1 OS=Bos taurus GN=P... [more]
PSA1_RAT4.518e-2232.96Proteasome subunit alpha type-1 OS=Rattus norvegic... [more]
PSA7A_ARATH7.706e-2232.37Proteasome subunit alpha type-7-A OS=Arabidopsis t... [more]
PSA72_DROME1.006e-2132.28Proteasome subunit alpha type-7-1A OS=Drosophila m... [more]
PSA7_YEAST1.314e-2131.82Proteasome component PRE6 OS=Saccharomyces cerevis... [more]
PSA4_MOUSE1.717e-2128.90Proteasome subunit alpha type-4 OS=Mus musculus GN... [more]
PSA4_SCHPO2.242e-2136.67Probable proteasome subunit alpha type-4 OS=Schizo... [more]

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Properties
Property NameValue
Genbank descriptionCGF1004287_A11 Developing fruit juice sac at 38 DAFB Citrus sinensis cDNA clone JSJune0002_IIF_A11 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK933311 ID=CK933311; Name=CK933311; organism=Citrus sinensis; type=EST; length=944bp
GGGGGAAAGAGGATCGAATTGACTCACAAATCGAAAAAGAAAGAAGAGAG
CAAGAATGAGCAGCATAGGCACAGGCTACGATCTGTCGGTGACCACATTC
TCTCCCGACGGTCGCGTTTTCCAGATCGAATACGCCGCCAAAGCCGTCGA
CAACAGCGGGACTGTGATTGGAATTAAATGCAAAGATGGCATCGTTATGG
GAGTGGAGAAGCTAATAGCGTCGAAGATGATGTTGCCTGGTTCCAATAGA
AGAATCCATTCCGTTCATCGTCACTCCGGCATGGCTGTTGCAGGATTAGC
AGCAGATGGGAGACAAATTGTTACCAGGGCCAAGTCTGAAGCTACAAACT
ATGAAAGTGTATATGGCGAACCAATTCCTGTTAAAGAACTTGCTCAACGA
GTTGCTAGCTATGTGCATCTATGTACTCTATATTGGTGGCTCAGACCTTT
TGGATGTGGTGTAATTCTTGGAGGTTATGACAGAGATGGACCGCAATTGT
ATATGATTGAACCTTCTGGTATCTCCTATAGGTATTTTGGAGCTGCAATT
GGAAAGGGCAGGCAGGCTGCTAAAACAGAGATTGAAAAGTTGAAGCTTTC
TGAAATGACCTGCCGACAAGGGGTCATTGAAGTAGCCAAGATCATTTATG
GAGTGCACGATGAGGCTAAGGACAAGGCCTTTGAACTGGAAATGAGCTGG
GTCTGTGATGAATCAAACCGCCAGCATCAGAAGGTACCAGATGAGCTTCT
TGAGGAAGCTAAGGCAGCCGCCAGAGCAGCGTTGGAAGAGATGGATGCAG
ATTAGTGTAGCAGAGTTGATAATATTTGGTTACTAGTTTGATGCCATTTC
AGGGCTTGTCTTGGAATACTTTTCGAAACATTTTCAAAATATTTANNNAG
ATTGGTGGATTCTCTTAAAAAAAAAAAAANNNAAANNNANAAAA
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