CK933311

Overview
NameCK933311
Unique NameCK933311
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length944
Libraries
Library NameType
Developing fruit juice sac at 38 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CK933311 vs. ExPASy Swiss-Prot
Match: PSA4_RAT (Proteasome subunit alpha type-4 OS=Rattus norvegicus GN=Psma4 PE=1 SV=1)

HSP 1 Score: 102.449 bits (254), Expect = 3.824e-21
Identity = 62/218 (28.44%), Postives = 113/218 (51.83%), Query Frame = 2
Query:   77 YDLSVTTFSPDGRVFQIEYAAKAVDNSGTVIGIKCKDGIVMGVEKLIASKMM-LPGSNRRIHSVHRHSGMAVAGLAADGRQIVTRAKSEATNYESVYGEPIPVKELAQRVASYVHLCTLYWWLRPFGCGVILGGYDRD-GPQLYMIEPSGISYRYFGAAIGKGRQAAKTEIEK-LKLSEMTCRQGVIEVAKIIYGVHDEAKDKAFELEMSWVCDESNR 721
            YD   T FSP+GR++Q+EYA +A+ ++GT +GI   DG+++  E+    K++     + +I+ ++     +VAG+ +D   +    +  A  Y   Y EPIP ++L   +       T +   RPFG  ++  G+D+  G QLY  +PSG    +    IG    AA + +++  K  EMT +  +    K++    D +K  A ++E++ +  E+ +
Sbjct:    5 YDSRTTIFSPEGRLYQVEYAMEAIGHAGTCLGILANDGVLLAAERRNIHKLLDEVFFSEKIYKLNEDMACSVAGITSDANVLTNELRLIAQRYLLQYQEPIPCEQLVTALCDIKQAYTQFGGKRPFGVSLLYIGWDKHYGFQLYQSDPSGNYGGWKATCIGNNSAAAVSMLKQDYKEGEMTLKSALALAVKVLNKTMDVSKLSAEKVEIATLTRENGK 222          
BLAST of CK933311 vs. ExPASy Swiss-Prot
Match: PSA4_HUMAN (Proteasome subunit alpha type-4 OS=Homo sapiens GN=PSMA4 PE=1 SV=1)

HSP 1 Score: 102.064 bits (253), Expect = 4.995e-21
Identity = 62/218 (28.44%), Postives = 113/218 (51.83%), Query Frame = 2
Query:   77 YDLSVTTFSPDGRVFQIEYAAKAVDNSGTVIGIKCKDGIVMGVEKLIASKMM-LPGSNRRIHSVHRHSGMAVAGLAADGRQIVTRAKSEATNYESVYGEPIPVKELAQRVASYVHLCTLYWWLRPFGCGVILGGYDRD-GPQLYMIEPSGISYRYFGAAIGKGRQAAKTEIEK-LKLSEMTCRQGVIEVAKIIYGVHDEAKDKAFELEMSWVCDESNR 721
            YD   T FSP+GR++Q+EYA +A+ ++GT +GI   DG+++  E+    K++     + +I+ ++     +VAG+ +D   +    +  A  Y   Y EPIP ++L   +       T +   RPFG  ++  G+D+  G QLY  +PSG    +    IG    AA + +++  K  EMT +  +    K++    D +K  A ++E++ +  E+ +
Sbjct:    5 YDSRTTIFSPEGRLYQVEYAMEAIGHAGTCLGILANDGVLLAAERRNIHKLLDEVFFSEKIYKLNEDMACSVAGITSDANVLTNELRLIAQRYLLQYQEPIPCEQLVTALCDIKQAYTQFGGKRPFGVSLLYIGWDKHYGFQLYQSDPSGNYGGWKATCIGNNSAAAVSMLKQDYKEGEMTLKSALALAIKVLNKTMDVSKLSAEKVEIATLTRENGK 222          
BLAST of CK933311 vs. ExPASy Swiss-Prot
Match: PSA4_CAEEL (Proteasome subunit alpha type-4 OS=Caenorhabditis elegans GN=pas-3 PE=2 SV=2)

HSP 1 Score: 102.064 bits (253), Expect = 4.995e-21
Identity = 56/173 (32.37%), Postives = 95/173 (54.91%), Query Frame = 2
Query:   77 YDLSVTTFSPDGRVFQIEYAAKAVDNSGTVIGIKCKDGIVMGVEKLIASKMMLPG-SNRRIHSVHRHSGMAVAGLAADGRQIVTRAKSEATNYESVYGEPIPVKELAQRVASYVHLCTLYWWLRPFGCGVILGGYDRD-GPQLYMIEPSGISYRYFGAAIGKGRQAAKTEIEK 589
            YD   T FSP+GR++Q+EYA +A+ ++GT +GI   +GIV+  E+    K++       +++ +  +    VAG+ AD   ++   +  A +Y + YGE +PV++L Q + +     T     RPFG  ++  G+D+  G QLY  +PSG    +    IG   QAA T +++
Sbjct:    5 YDSRTTIFSPEGRLYQVEYAMEAISHAGTCLGILSSEGIVVAAERKNVHKLLDDSVMTEKVYRLSDNISCTVAGITADANILINHLRWWAASYRNSYGEEMPVEQLVQNLCNEKQRYTQIGGKRPFGVSLLYIGWDKHYGYQLYQSDPSGNYTGWKATCIGSNHQAAVTLLKQ 177          
BLAST of CK933311 vs. ExPASy Swiss-Prot
Match: PSA4_BOVIN (Proteasome subunit alpha type-4 OS=Bos taurus GN=PSMA4 PE=1 SV=1)

HSP 1 Score: 102.064 bits (253), Expect = 4.995e-21
Identity = 62/218 (28.44%), Postives = 113/218 (51.83%), Query Frame = 2
Query:   77 YDLSVTTFSPDGRVFQIEYAAKAVDNSGTVIGIKCKDGIVMGVEKLIASKMM-LPGSNRRIHSVHRHSGMAVAGLAADGRQIVTRAKSEATNYESVYGEPIPVKELAQRVASYVHLCTLYWWLRPFGCGVILGGYDRD-GPQLYMIEPSGISYRYFGAAIGKGRQAAKTEIEK-LKLSEMTCRQGVIEVAKIIYGVHDEAKDKAFELEMSWVCDESNR 721
            YD   T FSP+GR++Q+EYA +A+ ++GT +GI   DG+++  E+    K++     + +I+ ++     +VAG+ +D   +    +  A  Y   Y EPIP ++L   +       T +   RPFG  ++  G+D+  G QLY  +PSG    +    IG    AA + +++  K  EMT +  +    K++    D +K  A ++E++ +  E+ +
Sbjct:    5 YDSRTTIFSPEGRLYQVEYAMEAIGHAGTCLGILANDGVLLAAERRNIHKLLDEVFFSEKIYKLNEDMACSVAGITSDANVLTNELRLIAQRYLLQYQEPIPCEQLVTALCDIKQAYTQFGGKRPFGVSLLYIGWDKHYGFQLYQSDPSGNYGGWKATCIGNNSAAAVSMLKQDYKEGEMTLKSALALAIKVLNKTMDVSKLSAEKVEIATLTRENGK 222          
BLAST of CK933311 vs. ExPASy Swiss-Prot
Match: PSA4_MACFA (Proteasome subunit alpha type-4 OS=Macaca fascicularis GN=PSMA4 PE=2 SV=1)

HSP 1 Score: 100.908 bits (250), Expect = 1.113e-20
Identity = 61/218 (27.98%), Postives = 113/218 (51.83%), Query Frame = 2
Query:   77 YDLSVTTFSPDGRVFQIEYAAKAVDNSGTVIGIKCKDGIVMGVEKLIASKMM-LPGSNRRIHSVHRHSGMAVAGLAADGRQIVTRAKSEATNYESVYGEPIPVKELAQRVASYVHLCTLYWWLRPFGCGVILGGYDRD-GPQLYMIEPSGISYRYFGAAIGKGRQAAKTEIEK-LKLSEMTCRQGVIEVAKIIYGVHDEAKDKAFELEMSWVCDESNR 721
            YD   T FSP+GR++Q+EYA +A+ ++GT +GI   DG+++  E+    K++     + +I+ ++     +VAG+ +D   +    +  A  Y   Y EPIP ++L   +       T +   RPFG  ++  G+D+  G QLY  +P+G    +    IG    AA + +++  K  EMT +  +    K++    D +K  A ++E++ +  E+ +
Sbjct:    5 YDSRTTIFSPEGRLYQVEYAMEAIGHAGTCLGILANDGVLLAAERRNIHKLLDEVFFSEKIYKLNEDMACSVAGITSDANVLTNELRLIAQRYLLQYQEPIPCEQLVTALCDIKQAYTQFGGKRPFGVSLLYIGWDKHYGFQLYQSDPNGNYGGWKATCIGNNSAAAVSMLKQDYKEGEMTLKSALALAIKVLNKTMDVSKLSAEKVEIATLTRENGK 222          
BLAST of CK933311 vs. ExPASy Swiss-Prot
Match: PSA6_CAEEL (Proteasome subunit alpha type-6 OS=Caenorhabditis elegans GN=pas-1 PE=1 SV=1)

HSP 1 Score: 100.523 bits (249), Expect = 1.453e-20
Identity = 58/207 (28.02%), Postives = 112/207 (54.11%), Query Frame = 2
Query:   74 GYDLSVTTFSPDGRVFQIEYAAKAVDNSG-TVIGIKCKDGIVMGVEKLIASKMMLPGSNRRIHSVHRHSGMAVAGLAADGRQIVTRAKSEATNYESVYGEPIPVKELAQRVASYVHLCTLYWWLRPFGCGVILGGYDRD-GPQLYMIEPSGISYRYFGAAIGKGRQAAKTEIEK--LKLSEMTCRQGV---IEVAKIIYGVHDEAKD 673
            G+D  +T FSP+GRV+Q+EYA KA++++  T + +K  D  V+ V+K +   +++  +   ++ + +  G    G+  D +  + RA+ EA +++   G  +P + LA+++A      T    +R  GC ++   YD + GP++Y ++P+G      G ++G  +  A + +EK   K SE+T  + +   IE  +   G+   +KD
Sbjct:    8 GFDRHITIFSPEGRVYQVEYAFKAINSTNLTAVAVKGADAAVIAVQKRVPDSLIVADTVTSVYQISQSVGCCAIGMIPDAKFQIKRAQGEAASWKYKNGYDMPCELLAKKMADLNQYYTQNAEMRSLGCALLFISYDDEKGPEVYRVDPAGYYRGMKGVSVGVKQLPATSFLEKKIKKKSELTSTEAIELAIEALQTSLGIDVRSKD 214          
BLAST of CK933311 vs. ExPASy Swiss-Prot
Match: PSA1_CHICK (Proteasome subunit alpha type-1 OS=Gallus gallus GN=PSMA1 PE=2 SV=2)

HSP 1 Score: 98.2117 bits (243), Expect = 7.213e-20
Identity = 54/167 (32.34%), Postives = 86/167 (51.50%), Query Frame = 2
Query:   89 VTTFSPDGRVFQIEYAAKAVDNSGTVIGIKCKDGIVMGVEKLIASKMMLPGSNRRIHSVHRHSGMAVAGLAADGRQIVTRAKSEATNYESVYGEPIPVKELAQRVASYVHLCTLYWWLRPFGCGVILGGYDRDGPQLYMIEPSGISYRYFGAAIGKGRQAAKTEIEK 589
            VT +SP GR+ QIEYA +AV      +G+K K   V+   K   S+  L    ++I  V  H G+++AGL AD R +    + E  +   V+  P+PV  L   + S   + T  +  RP+G G+++ GYD  GP ++   PS   +     +IG   Q+A+  +E+
Sbjct:    9 VTVWSPQGRIHQIEYAMEAVKQGSATVGLKSKTHAVLVALKRAQSE--LAAHQKKILYVDNHIGISIAGLTADARLLCNFMRQECLDSRFVFDRPLPVSRLVSLIGSKTQIPTQRYGRRPYGVGLLIAGYDDMGPHIFQTCPSANYFDCKAMSIGARSQSARNYLER 173          
BLAST of CK933311 vs. ExPASy Swiss-Prot
Match: PSA6_YEAST (Proteasome component C7-alpha OS=Saccharomyces cerevisiae GN=SCL1 PE=1 SV=1)

HSP 1 Score: 97.8265 bits (242), Expect = 9.420e-20
Identity = 57/173 (32.95%), Postives = 90/173 (52.02%), Query Frame = 2
Query:   74 GYDLSVTTFSPDGRVFQIEYAAKAVDNSG-TVIGIKCKDGIVMGVEKLIASKMMLPGSNRRIHSVHRHSGMAVAGLAADGRQIVTRAKSEATNYESVYGEPIPVKELAQRVASYVHLCTLYWWLRPFGCGVILGGYDRD-GPQLYMIEPSGISYRYFGAAIGKGRQAAKTEIE 586
            GYD  +T FSP+GR++Q+EYA KA + +    + ++ KD  V+  +K +  K++ P +   I  + R  GM V G   D R    RAK+EA  +   YG  +P   LA+R+A+   + T   ++RP G  +     D + GP +Y  +P+G    Y   A G  +Q   T +E
Sbjct:   11 GYDRHITIFSPEGRLYQVEYAFKATNQTNINSLAVRGKDCTVVISQKKVPDKLLDPTTVSYIFCISRTIGMVVNGPIPDARNAALRAKAEAAEFRYKYGYDMPCDVLAKRMANLSQIYTQRAYMRPLGVILTFVSVDEELGPSIYKTDPAGYYVGYKATATGPKQQEITTNLE 183          
BLAST of CK933311 vs. ExPASy Swiss-Prot
Match: PSA6_SCHPO (Probable proteasome subunit alpha type-6 OS=Schizosaccharomyces pombe GN=SPBC646.16 PE=2 SV=1)

HSP 1 Score: 97.8265 bits (242), Expect = 9.420e-20
Identity = 55/174 (31.61%), Postives = 96/174 (55.17%), Query Frame = 2
Query:   74 GYDLSVTTFSPDGRVFQIEYAAKAVDNSG-TVIGIKCKDGIVMGVEKLIASKMMLPGSNRRIHSVHRHSGMAVAGLAADGRQIVTRAKSEATNYESVYGEPIPVKELAQRVASYVHLCTLYWWLRPFGCGVILGGYDRD-GPQLYMIEPSGISYRYFGAAIGKGRQAAKTEIEK 589
            G+D ++T FSP+GR++Q+EYA KA +N+G T +G+  K+   +  +K +  K++   + + +  + +  G  + G  AD R  V+RA+SEA  +E   G P+P   LA+R+A+   + T    +RP G  + L   D + GP L+ ++P+G    Y   + G  +      +EK
Sbjct:    6 GFDRTITVFSPEGRLYQVEYAFKAFNNAGITSVGVTGKNCACVISQKKVPDKLIDASTVKHVFPITKGIGCVMTGSIADARAQVSRARSEAAEFEYKNGYPMPCDVLAKRMANIAQVSTQRAAMRPLGVAMTLVAVDDEIGPSLFKLDPAGFYIGYKATSAGPKQTETINWLEK 179          
BLAST of CK933311 vs. ExPASy Swiss-Prot
Match: PSA1_TRYBB (Proteasome subunit alpha type-1 OS=Trypanosoma brucei brucei PE=2 SV=1)

HSP 1 Score: 97.4413 bits (241), Expect = 1.230e-19
Identity = 57/179 (31.84%), Postives = 101/179 (56.42%), Query Frame = 2
Query:   74 GYDLSVTTFSPDGRVFQIEYAAKAVDNSGTV-IGIKCKDGIVMGVEKLIASKMMLPGSNRRIHSVHRHSGMAVAGLAADGRQIVTRAKSEATNYESVYGEPIPVKELAQRVASYVHLCTLYWWLRPFGCGVILGGY---DRDG---PQLYMIEPSGISYRYFGAAIGKGRQAAKTEIEK 589
            G+D  +T FSP+G ++Q+EYA KAV  +G + + I+CKD +++  +  +  K+M P +   +++V+ ++G+ + G A DG+ +V +A++EA+ Y+  YG P+ V  LA+       + T    +R  G  +   G    D DG   PQ+Y ++P+G        A+GK +  A   +EK
Sbjct:    5 GFDKYITVFSPEGSLYQVEYAFKAVTYAGLLTVAIRCKDAVLVFTQHSVPDKLMRPETITSLYNVNDNTGVCITGRAPDGKALVQKARNEASEYKYRYGMPMLVSVLAKPWQDMAQVRTQQAGMRLMGTIMTFVGMEQNDEDGAWIPQIYCVDPAG-GAAVHACAVGKKQIEACAFLEK 182          
The following BLAST results are available for this feature:
BLAST of CK933311 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 176
Match NameE-valueIdentityDescription
PSA4_RAT3.824e-2128.44Proteasome subunit alpha type-4 OS=Rattus norvegic... [more]
PSA4_HUMAN4.995e-2128.44Proteasome subunit alpha type-4 OS=Homo sapiens GN... [more]
PSA4_CAEEL4.995e-2132.37Proteasome subunit alpha type-4 OS=Caenorhabditis ... [more]
PSA4_BOVIN4.995e-2128.44Proteasome subunit alpha type-4 OS=Bos taurus GN=P... [more]
PSA4_MACFA1.113e-2027.98Proteasome subunit alpha type-4 OS=Macaca fascicul... [more]
PSA6_CAEEL1.453e-2028.02Proteasome subunit alpha type-6 OS=Caenorhabditis ... [more]
PSA1_CHICK7.213e-2032.34Proteasome subunit alpha type-1 OS=Gallus gallus G... [more]
PSA6_YEAST9.420e-2032.95Proteasome component C7-alpha OS=Saccharomyces cer... [more]
PSA6_SCHPO9.420e-2031.61Probable proteasome subunit alpha type-6 OS=Schizo... [more]
PSA1_TRYBB1.230e-1931.84Proteasome subunit alpha type-1 OS=Trypanosoma bru... [more]

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Properties
Property NameValue
Genbank descriptionCGF1004287_A11 Developing fruit juice sac at 38 DAFB Citrus sinensis cDNA clone JSJune0002_IIF_A11 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK933311 ID=CK933311; Name=CK933311; organism=Citrus sinensis; type=EST; length=944bp
GGGGGAAAGAGGATCGAATTGACTCACAAATCGAAAAAGAAAGAAGAGAG
CAAGAATGAGCAGCATAGGCACAGGCTACGATCTGTCGGTGACCACATTC
TCTCCCGACGGTCGCGTTTTCCAGATCGAATACGCCGCCAAAGCCGTCGA
CAACAGCGGGACTGTGATTGGAATTAAATGCAAAGATGGCATCGTTATGG
GAGTGGAGAAGCTAATAGCGTCGAAGATGATGTTGCCTGGTTCCAATAGA
AGAATCCATTCCGTTCATCGTCACTCCGGCATGGCTGTTGCAGGATTAGC
AGCAGATGGGAGACAAATTGTTACCAGGGCCAAGTCTGAAGCTACAAACT
ATGAAAGTGTATATGGCGAACCAATTCCTGTTAAAGAACTTGCTCAACGA
GTTGCTAGCTATGTGCATCTATGTACTCTATATTGGTGGCTCAGACCTTT
TGGATGTGGTGTAATTCTTGGAGGTTATGACAGAGATGGACCGCAATTGT
ATATGATTGAACCTTCTGGTATCTCCTATAGGTATTTTGGAGCTGCAATT
GGAAAGGGCAGGCAGGCTGCTAAAACAGAGATTGAAAAGTTGAAGCTTTC
TGAAATGACCTGCCGACAAGGGGTCATTGAAGTAGCCAAGATCATTTATG
GAGTGCACGATGAGGCTAAGGACAAGGCCTTTGAACTGGAAATGAGCTGG
GTCTGTGATGAATCAAACCGCCAGCATCAGAAGGTACCAGATGAGCTTCT
TGAGGAAGCTAAGGCAGCCGCCAGAGCAGCGTTGGAAGAGATGGATGCAG
ATTAGTGTAGCAGAGTTGATAATATTTGGTTACTAGTTTGATGCCATTTC
AGGGCTTGTCTTGGAATACTTTTCGAAACATTTTCAAAATATTTANNNAG
ATTGGTGGATTCTCTTAAAAAAAAAAAAANNNAAANNNANAAAA
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