CK933311

Overview
NameCK933311
Unique NameCK933311
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length944
Libraries
Library NameType
Developing fruit juice sac at 38 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CK933311 vs. ExPASy Swiss-Prot
Match: PSMA_METMP (Proteasome subunit alpha OS=Methanococcus maripaludis GN=psmA PE=3 SV=1)

HSP 1 Score: 137.887 bits (346), Expect = 8.214e-32
Identity = 71/185 (38.38%), Postives = 106/185 (57.30%), Query Frame = 2
Query:   71 TGYDLSVTTFSPDGRVFQIEYAAKAVDNSGTVIGIKCKDGIVMGVEKLIASKMMLPGSNRRIHSVHRHSGMAVAGLAADGRQIVTRAKSEATNYESVYGEPIPVKELAQRVASYVHLCTLYWWLRPFGCGVILGGYDRDGPQLYMIEPSGISYRYFGAAIGKGRQAAKTEIEKLKLSEMTCRQGV 625
            +GYD ++T FSP+GR++Q+EYA +AV    T +GIKCKDG+V+ V++ I SK++   S  +I  +  H   A +GL AD R ++ RA+ EA      YGE I V+ LA+++       T +   RPFG  +++ G DR   +L+  +PSG    Y   AIG GR  A   +E      MT  +G+
Sbjct:    8 SGYDRAITIFSPEGRLYQVEYAREAVRRGTTAVGIKCKDGVVLAVDRRITSKLIDVSSIEKIFQIDDHIVAATSGLVADARVLIDRARIEAQMNRVSYGEAITVEALAKKICDIKQAYTQHGGARPFGLALLITGIDRHSARLFETDPSGALIEYKATAIGSGRPIAMEVLESKYDENMTVSEGM 192          
BLAST of CK933311 vs. ExPASy Swiss-Prot
Match: PSMA_METBF (Proteasome subunit alpha OS=Methanosarcina barkeri (strain Fusaro / DSM 804) GN=psmA PE=3 SV=1)

HSP 1 Score: 137.502 bits (345), Expect = 1.073e-31
Identity = 78/222 (35.14%), Postives = 119/222 (53.60%), Query Frame = 2
Query:   74 GYDLSVTTFSPDGRVFQIEYAAKAVDNSGTVIGIKCKDGIVMGVEKLIASKMMLPGSNRRIHSVHRHSGMAVAGLAADGRQIVTRAKSEATNYESVYGEPIPVKELAQRVASYVHLCTLYWWLRPFGCGVILGGYDRDGPQLYMIEPSGISYRYFGAAIGKGRQAAKTEIEKLKLSEMTCRQGVIEVAKIIYGVHDEAKDKAFELEMSWVCDESNRQHQKVP 739
            GYD ++T FSPDGR+FQ+EYA +AV    T +GIK  DG+V+ V+K I S+++   S  +I  +  H G A +GL AD R +V RA+ EA      Y EPI V+ +++++  +    T Y  +RP+G  +++ G D + P+L+  +PSG    Y   AIG GR A     E     +M     ++     +Y    E K  A  LE+  V  +  +  + VP
Sbjct:    8 GYDRAITVFSPDGRLFQVEYAREAVKRGTTAVGIKAADGVVLLVDKRITSRLVEAESIEKIFQIDDHIGAATSGLVADARSLVDRARVEAQVNRVSYDEPIGVEVISKKICDHKQTYTQYGGVRPYGTALLIAGVDDNLPRLFETDPSGALLEYKATAIGAGRNAVVEVFEAEYRQDMNMDAAILLGMDALYRA-AEGKFDASTLEVGIVSLQDKKFRKLVP 228          
BLAST of CK933311 vs. ExPASy Swiss-Prot
Match: PSMA_METAC (Proteasome subunit alpha OS=Methanosarcina acetivorans GN=psmA PE=3 SV=1)

HSP 1 Score: 136.732 bits (343), Expect = 1.830e-31
Identity = 77/216 (35.65%), Postives = 116/216 (53.70%), Query Frame = 2
Query:   74 GYDLSVTTFSPDGRVFQIEYAAKAVDNSGTVIGIKCKDGIVMGVEKLIASKMMLPGSNRRIHSVHRHSGMAVAGLAADGRQIVTRAKSEATNYESVYGEPIPVKELAQRVASYVHLCTLYWWLRPFGCGVILGGYDRDGPQLYMIEPSGISYRYFGAAIGKGRQAAKTEIEKLKLSEMTCRQGVIEVAKIIYGVHDEAKDKAFELEMSWVCDESNR 721
            GYD ++T FSPDGR+FQ+EYA +AV    T +GIK  DG+V+ V+K I S+++   S  +I  +  H G A +GL AD R +V RA+ EA      Y EPI V+ +++++  +    T Y  +RP+G  +++ G D + P+L+  +PSG    Y   AIG GR A     E     +M     ++     +Y    E K  A  LE+  V  E  +
Sbjct:    6 GYDRAITVFSPDGRLFQVEYAREAVKRGTTAVGIKAADGVVLLVDKRITSRLVEAESIEKIFQIDEHIGAATSGLVADARSLVDRARVEAQVNRVSYDEPIGVEVISKKICDHKQTYTQYGGVRPYGTALLIAGVDDNKPRLFETDPSGALLEYKATAIGAGRNAVVEVFEADYREDMNMDAAILLGMDALYKA-AEGKFDAGTLEVGVVSLEDKK 220          
BLAST of CK933311 vs. ExPASy Swiss-Prot
Match: PSMA_METVS (Proteasome subunit alpha OS=Methanococcus vannielii (strain SB / ATCC 35089 / DSM 1224) GN=psmA PE=3 SV=1)

HSP 1 Score: 135.961 bits (341), Expect = 3.121e-31
Identity = 70/185 (37.84%), Postives = 107/185 (57.84%), Query Frame = 2
Query:   71 TGYDLSVTTFSPDGRVFQIEYAAKAVDNSGTVIGIKCKDGIVMGVEKLIASKMMLPGSNRRIHSVHRHSGMAVAGLAADGRQIVTRAKSEATNYESVYGEPIPVKELAQRVASYVHLCTLYWWLRPFGCGVILGGYDRDGPQLYMIEPSGISYRYFGAAIGKGRQAAKTEIEKLKLSEMTCRQGV 625
            +GYD ++T FSP+GR++Q+EYA +AV    T +GIKCKDG+V+ V++ I SK++   S  +I  +  H   A +GL AD R ++ RA+ EA      YGE I V+ LA+++       T +   RPFG  +++ G DR   +L+  +PSG    Y   AIG GR  A   +E+     M+  +G+
Sbjct:    8 SGYDRAITIFSPEGRLYQVEYAREAVRRGTTAVGIKCKDGVVLAVDRRITSKLIDVSSIEKIFQIDDHIVAATSGLVADARVLIDRARVEAQVNRISYGEAITVEALAKKICDIKQAYTHHGGARPFGLALLITGIDRHSARLFETDPSGALIEYKATAIGSGRPVAMEILEEKYDENMSVSEGM 192          
BLAST of CK933311 vs. ExPASy Swiss-Prot
Match: PSA5B_ARATH (Proteasome subunit alpha type-5-B OS=Arabidopsis thaliana GN=PAE2 PE=1 SV=2)

HSP 1 Score: 135.576 bits (340), Expect = 4.077e-31
Identity = 74/207 (35.75%), Postives = 113/207 (54.59%), Query Frame = 2
Query:   71 TGYDLSVTTFSPDGRVFQIEYAAKAVDNSGTVIGIKCKDGIVMGVEKLIASKMMLPGSNRRIHSVHRHSGMAVAGLAADGRQIVTRAKSEATNYESVYGEPIPVKELAQRVASYVHLCTLYW---------WLRPFGCGVILGGYDRDGPQLYMIEPSGISYRYFGAAIGKGRQAAKTEIEKLKLSEMTCRQGVIEVAKIIYGVHDE 664
            T YD  V TFSP+GR+FQ+EYA +A+    T IG+K K+G+V+ VEK I S ++ P S  +I  +  H G A++GL AD R +V  A+ E  N+   YGEP+ V+   Q       LC L             RPFG  +++ G+D +GP LY  +PSG  ++    AIG G + A + +++    ++T ++       I+  V +E
Sbjct:    6 TEYDRGVNTFSPEGRLFQVEYAIEAIKLGSTAIGVKTKEGVVLAVEKRITSPLLEPSSVEKIMEIDDHIGCAMSGLIADARTLVEHARVETQNHRFSYGEPMTVESTTQA------LCDLALRFGEGEEESMSRPFGVSLLIAGHDENGPSLYYTDPSGTFWQCNAKAIGSGSEGADSSLQEQFNKDITLQEAETIAVSILKQVMEE 206          
BLAST of CK933311 vs. ExPASy Swiss-Prot
Match: PSMA_METS3 (Proteasome subunit alpha OS=Methanobrevibacter smithii (strain PS / ATCC 35061 / DSM 861) GN=psmA PE=3 SV=1)

HSP 1 Score: 134.806 bits (338), Expect = 6.954e-31
Identity = 72/184 (39.13%), Postives = 103/184 (55.98%), Query Frame = 2
Query:   74 GYDLSVTTFSPDGRVFQIEYAAKAVDNSGTVIGIKCKDGIVMGVEKLIASKMMLPGSNRRIHSVHRHSGMAVAGLAADGRQIVTRAKSEATNYESVYGEPIPVKELAQRVASYVHLCTLYWWLRPFGCGVILGGYDRDGPQLYMIEPSGISYRYFGAAIGKGRQAAKTEIEKLKLSEMTCRQGV 625
            GYD ++T FSPDGR+FQ+EYA +AV    T IGIKC +GIV+ V+K   S ++   S  +I  +  H G A +GL AD R +V RA+ EA   +  Y EPI V  L++++   + + T    +RPFG  +I+GG      +L+  +PSG    Y   AIG GR AA    E     +M   + +
Sbjct:    8 GYDRAITVFSPDGRLFQVEYAREAVKRGTTSIGIKCSEGIVLAVDKRTTSNLVEATSIEKIFKIDEHIGAATSGLVADARALVERARVEAQINKITYSEPIRVDSLSKKLCDMLQMYTQNGGVRPFGSALIIGGVYDGICKLFETDPSGALIEYKATAIGSGRSAAMDIFEDQYKDDMNLNEAI 191          
BLAST of CK933311 vs. ExPASy Swiss-Prot
Match: PSA5A_ARATH (Proteasome subunit alpha type-5-A OS=Arabidopsis thaliana GN=PAE1 PE=1 SV=1)

HSP 1 Score: 134.42 bits (337), Expect = 9.082e-31
Identity = 73/207 (35.27%), Postives = 113/207 (54.59%), Query Frame = 2
Query:   71 TGYDLSVTTFSPDGRVFQIEYAAKAVDNSGTVIGIKCKDGIVMGVEKLIASKMMLPGSNRRIHSVHRHSGMAVAGLAADGRQIVTRAKSEATNYESVYGEPIPVKELAQRVASYVHLCTLYW---------WLRPFGCGVILGGYDRDGPQLYMIEPSGISYRYFGAAIGKGRQAAKTEIEKLKLSEMTCRQGVIEVAKIIYGVHDE 664
            T YD  V TFSP+GR+FQ+EYA +A+    T IG+K K+G+V+ VEK I S ++ P S  +I  +  H G A++GL AD R +V  A+ E  N+   YGEP+ V+   Q       LC L             RPFG  +++ G+D +GP LY  +PSG  ++    AIG G + A + +++    +++ ++       I+  V +E
Sbjct:    6 TEYDRGVNTFSPEGRLFQVEYAIEAIKLGSTAIGVKTKEGVVLAVEKRITSPLLEPSSVEKIMEIDDHIGCAMSGLIADARTLVEHARVETQNHRFSYGEPMTVESTTQA------LCDLALRFGEGEEESMSRPFGVSLLIAGHDENGPSLYYTDPSGTFWQCNAKAIGSGSEGADSSLQEQFNKDLSLQEAETIAVSILKQVMEE 206          
BLAST of CK933311 vs. ExPASy Swiss-Prot
Match: PSMA_METM6 (Proteasome subunit alpha OS=Methanococcus maripaludis (strain C6 / ATCC BAA-1332) GN=psmA PE=3 SV=1)

HSP 1 Score: 133.65 bits (335), Expect = 1.549e-30
Identity = 69/185 (37.30%), Postives = 104/185 (56.22%), Query Frame = 2
Query:   71 TGYDLSVTTFSPDGRVFQIEYAAKAVDNSGTVIGIKCKDGIVMGVEKLIASKMMLPGSNRRIHSVHRHSGMAVAGLAADGRQIVTRAKSEATNYESVYGEPIPVKELAQRVASYVHLCTLYWWLRPFGCGVILGGYDRDGPQLYMIEPSGISYRYFGAAIGKGRQAAKTEIEKLKLSEMTCRQGV 625
            +GYD ++T FSP+GR++Q+EYA +AV    T +GIKC DG+V+ V++ I SK++   S  +I  +  H   A +GL AD R ++ RA+ EA      YGE I V+ LA+++       T +   RPFG  +++ G DR   +L+  +PSG    Y   AIG GR  A   +E      M   +G+
Sbjct:    8 SGYDRAITIFSPEGRLYQVEYAREAVRRGTTAVGIKCNDGVVLAVDRRITSKLIDVSSIEKIFQIDDHIVAATSGLVADARVLIDRARLEAQMNRISYGEAITVEALAKKICDIKQAYTQHGGARPFGLALLITGIDRHSARLFETDPSGALIEYKATAIGSGRPIAMEVLESKYDENMIVSEGM 192          
BLAST of CK933311 vs. ExPASy Swiss-Prot
Match: PSA5_YEAST (Proteasome component PUP2 OS=Saccharomyces cerevisiae GN=PUP2 PE=1 SV=2)

HSP 1 Score: 133.65 bits (335), Expect = 1.549e-30
Identity = 79/213 (37.09%), Postives = 116/213 (54.46%), Query Frame = 2
Query:   77 YDLSVTTFSPDGRVFQIEYAAKAVDNSGTVIGIKCKDGIVMGVEKLIASKMMLPGSNRRIHSVHRHSGMAVAGLAADGRQIVTRAKSEATNYESVYGEPIPVKELAQRVASYVHLCTL------------YWWLRPFGCGVILGGYDR-DGPQLYMIEPSGISYRYFGAAIGKGRQAAKTEIEKLKLSEMTCRQGVIEVAKIIYGVHDEAKDK 676
            YD  V+TFSP+GR+FQ+EY+ +A+    T IGI  K+G+V+GVEK   S ++   S  +I  + RH G A++GL AD R ++  A++ A  +   Y E I V+ L Q V      C L                RPFG  +++ G+D  DG QL+  EPSG  YRY   AIG G + A+ E+     S +T ++  + V KI+  V +E  D+
Sbjct:    8 YDRGVSTFSPEGRLFQVEYSLEAIKLGSTAIGIATKEGVVLGVEKRATSPLLESDSIEKIVEIDRHIGCAMSGLTADARSMIEHARTAAVTHNLYYDEDINVESLTQSV------CDLALRFGEGASGEERLMSRPFGVALLIAGHDADDGYQLFHAEPSGTFYRYNAKAIGSGSEGAQAELLNEWHSSLTLKEAELLVLKILKQVMEEKLDE 214          
BLAST of CK933311 vs. ExPASy Swiss-Prot
Match: PSMA_SULIY (Proteasome subunit alpha OS=Sulfolobus islandicus (strain Y.G.57.14 / Yellowstone #1) GN=psmA PE=3 SV=1)

HSP 1 Score: 133.265 bits (334), Expect = 2.023e-30
Identity = 68/191 (35.60%), Postives = 108/191 (56.54%), Query Frame = 2
Query:   74 GYDLSVTTFSPDGRVFQIEYAAKAVDNSGTVIGIKCKDGIVMGVEKLIASKMMLPGSNRRIHSVHRHSGMAVAGLAADGRQIVTRAKSEATNYESVYGEPIPVKELAQRVASYVHLCTLYWWLRPFGCGVILGGYDRDGPQLYMIEPSGISYRYFGAAIGKGRQAAKTEIEKLKLSEMTCRQGVIEVAKII 646
            GYD ++T FSPDG ++Q++YA +AV    T IGIK K G+V+  EK  A  ++   S  ++  +  H G + AGLA+DGR ++  A++ A  +  +Y EP+ +  L + VA    + T +  +RPFG  +++ G D+  P+LYM EPSG    Y   AIG+G   A   +EK    ++T    ++   K +
Sbjct:    9 GYDRAITIFSPDGSLYQVDYAFEAVKKGWTAIGIKSKSGVVIASEKRKAQSLLDVDSIEKVFLIDDHVGCSFAGLASDGRVLIDYARNIALQHRLIYDEPVSIDYLTKSVADVKQMYTQHGGVRPFGVALVIAGIDKSVPKLYMTEPSGQYMPYQAVAIGQGYYTATEFLEKNYKEDLTIEDTILLALKAL 199          
The following BLAST results are available for this feature:
BLAST of CK933311 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 176
Match NameE-valueIdentityDescription
PSMA_METMP8.214e-3238.38Proteasome subunit alpha OS=Methanococcus maripalu... [more]
PSMA_METBF1.073e-3135.14Proteasome subunit alpha OS=Methanosarcina barkeri... [more]
PSMA_METAC1.830e-3135.65Proteasome subunit alpha OS=Methanosarcina acetivo... [more]
PSMA_METVS3.121e-3137.84Proteasome subunit alpha OS=Methanococcus vannieli... [more]
PSA5B_ARATH4.077e-3135.75Proteasome subunit alpha type-5-B OS=Arabidopsis t... [more]
PSMA_METS36.954e-3139.13Proteasome subunit alpha OS=Methanobrevibacter smi... [more]
PSA5A_ARATH9.082e-3135.27Proteasome subunit alpha type-5-A OS=Arabidopsis t... [more]
PSMA_METM61.549e-3037.30Proteasome subunit alpha OS=Methanococcus maripalu... [more]
PSA5_YEAST1.549e-3037.09Proteasome component PUP2 OS=Saccharomyces cerevis... [more]
PSMA_SULIY2.023e-3035.60Proteasome subunit alpha OS=Sulfolobus islandicus ... [more]

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Properties
Property NameValue
Genbank descriptionCGF1004287_A11 Developing fruit juice sac at 38 DAFB Citrus sinensis cDNA clone JSJune0002_IIF_A11 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK933311 ID=CK933311; Name=CK933311; organism=Citrus sinensis; type=EST; length=944bp
GGGGGAAAGAGGATCGAATTGACTCACAAATCGAAAAAGAAAGAAGAGAG
CAAGAATGAGCAGCATAGGCACAGGCTACGATCTGTCGGTGACCACATTC
TCTCCCGACGGTCGCGTTTTCCAGATCGAATACGCCGCCAAAGCCGTCGA
CAACAGCGGGACTGTGATTGGAATTAAATGCAAAGATGGCATCGTTATGG
GAGTGGAGAAGCTAATAGCGTCGAAGATGATGTTGCCTGGTTCCAATAGA
AGAATCCATTCCGTTCATCGTCACTCCGGCATGGCTGTTGCAGGATTAGC
AGCAGATGGGAGACAAATTGTTACCAGGGCCAAGTCTGAAGCTACAAACT
ATGAAAGTGTATATGGCGAACCAATTCCTGTTAAAGAACTTGCTCAACGA
GTTGCTAGCTATGTGCATCTATGTACTCTATATTGGTGGCTCAGACCTTT
TGGATGTGGTGTAATTCTTGGAGGTTATGACAGAGATGGACCGCAATTGT
ATATGATTGAACCTTCTGGTATCTCCTATAGGTATTTTGGAGCTGCAATT
GGAAAGGGCAGGCAGGCTGCTAAAACAGAGATTGAAAAGTTGAAGCTTTC
TGAAATGACCTGCCGACAAGGGGTCATTGAAGTAGCCAAGATCATTTATG
GAGTGCACGATGAGGCTAAGGACAAGGCCTTTGAACTGGAAATGAGCTGG
GTCTGTGATGAATCAAACCGCCAGCATCAGAAGGTACCAGATGAGCTTCT
TGAGGAAGCTAAGGCAGCCGCCAGAGCAGCGTTGGAAGAGATGGATGCAG
ATTAGTGTAGCAGAGTTGATAATATTTGGTTACTAGTTTGATGCCATTTC
AGGGCTTGTCTTGGAATACTTTTCGAAACATTTTCAAAATATTTANNNAG
ATTGGTGGATTCTCTTAAAAAAAAAAAAANNNAAANNNANAAAA
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