CK934203 | Citrus Genome Database

Homology

BLAST of CK934203 vs. ExPASy Swiss-Prot
Match: CB23_ORYSJ (Chlorophyll a-b binding protein, chloroplastic OS=Oryza sativa subsp. japonica GN=RCABP89 PE=2 SV=1)

HSP 1 Score: 90.1225 bits (222), Expect = 3.742e-31
Identity = 41/47 (87.23%), Postives = 42/47 (89.36%), Query Frame = 2

Query:    8 LTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGXXGGRLP 148
            LTGEFPGDYGWDTAGLSADPETFA+NRELEVIHSRWAMLG  G   P
Sbjct:   67 LTGEFPGDYGWDTAGLSADPETFARNRELEVIHSRWAMLGALGCVFP 113

HSP 2 Score: 64.3142 bits (155), Expect = 3.742e-31
Identity = 31/35 (88.57%), Postives = 31/35 (88.57%), Query Frame = 3

Query:  123 LXXXGGVFPEILSKNGVKFGEAVWFKAGAQIFSEG 227
            L   G VFPEILSKNGVKFGEAVWFKAGAQIFSEG
Sbjct:  105 LGALGCVFPEILSKNGVKFGEAVWFKAGAQIFSEG 139

[Close]

BLAST of CK934203 vs. ExPASy Swiss-Prot
Match: CB23_ORYSI (Chlorophyll a-b binding protein, chloroplastic OS=Oryza sativa subsp. indica GN=OsI_012078 PE=2 SV=1)

HSP 1 Score: 90.1225 bits (222), Expect = 3.742e-31
Identity = 41/47 (87.23%), Postives = 42/47 (89.36%), Query Frame = 2

Query:    8 LTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGXXGGRLP 148
            LTGEFPGDYGWDTAGLSADPETFA+NRELEVIHSRWAMLG  G   P
Sbjct:   67 LTGEFPGDYGWDTAGLSADPETFARNRELEVIHSRWAMLGALGCVFP 113

HSP 2 Score: 64.3142 bits (155), Expect = 3.742e-31
Identity = 31/35 (88.57%), Postives = 31/35 (88.57%), Query Frame = 3

Query:  123 LXXXGGVFPEILSKNGVKFGEAVWFKAGAQIFSEG 227
            L   G VFPEILSKNGVKFGEAVWFKAGAQIFSEG
Sbjct:  105 LGALGCVFPEILSKNGVKFGEAVWFKAGAQIFSEG 139

[Close]

BLAST of CK934203 vs. ExPASy Swiss-Prot
Match: CB21_LEMGI (Chlorophyll a-b binding protein of LHCII type I, chloroplastic OS=Lemna gibba PE=3 SV=1)

HSP 1 Score: 91.2781 bits (225), Expect = 1.076e-30
Identity = 42/47 (89.36%), Postives = 42/47 (89.36%), Query Frame = 2

Query:    8 LTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGXXGGRLP 148
            LTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLG  G   P
Sbjct:   68 LTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCIFP 114

HSP 2 Score: 61.6178 bits (148), Expect = 1.076e-30
Identity = 28/35 (80.00%), Postives = 31/35 (88.57%), Query Frame = 3

Query:  123 LXXXGGVFPEILSKNGVKFGEAVWFKAGAQIFSEG 227
            L   G +FPE+LSKNGV+FGEAVWFKAGAQIFSEG
Sbjct:  106 LGALGCIFPELLSKNGVQFGEAVWFKAGAQIFSEG 140

[Close]

BLAST of CK934203 vs. ExPASy Swiss-Prot
Match: CB2A_PYRPY (Chlorophyll a-b binding protein 1A, chloroplastic OS=Pyrus pyrifolia PE=2 SV=1)

HSP 1 Score: 91.2781 bits (225), Expect = 1.400e-30
Identity = 42/47 (89.36%), Postives = 42/47 (89.36%), Query Frame = 2

Query:    8 LTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGXXGGRLP 148
            LTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLG  G   P
Sbjct:   82 LTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFP 128

HSP 2 Score: 61.2326 bits (147), Expect = 1.400e-30
Identity = 28/35 (80.00%), Postives = 31/35 (88.57%), Query Frame = 3

Query:  123 LXXXGGVFPEILSKNGVKFGEAVWFKAGAQIFSEG 227
            L   G VFPE+L++NGVKFGEAVWFKAGAQIFSEG
Sbjct:  120 LGALGCVFPELLARNGVKFGEAVWFKAGAQIFSEG 154

[Close]

BLAST of CK934203 vs. ExPASy Swiss-Prot
Match: CB2A_PINSY (Chlorophyll a-b binding protein type 2 member 1A, chloroplastic OS=Pinus sylvestris PE=2 SV=1)

HSP 1 Score: 91.2781 bits (225), Expect = 1.400e-30
Identity = 42/47 (89.36%), Postives = 42/47 (89.36%), Query Frame = 2

Query:    8 LTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGXXGGRLP 148
            LTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLG  G   P
Sbjct:   82 LTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFP 128

HSP 2 Score: 61.2326 bits (147), Expect = 1.400e-30
Identity = 28/35 (80.00%), Postives = 31/35 (88.57%), Query Frame = 3

Query:  123 LXXXGGVFPEILSKNGVKFGEAVWFKAGAQIFSEG 227
            L   G VFPE+L++NGVKFGEAVWFKAGAQIFSEG
Sbjct:  120 LGALGCVFPELLARNGVKFGEAVWFKAGAQIFSEG 154

[Close]

BLAST of CK934203 vs. ExPASy Swiss-Prot
Match: CB21_GOSHI (Chlorophyll a-b binding protein 151, chloroplastic OS=Gossypium hirsutum GN=CAB-151 PE=2 SV=2)

HSP 1 Score: 89.3521 bits (220), Expect = 1.401e-30
Identity = 41/47 (87.23%), Postives = 41/47 (87.23%), Query Frame = 2

Query:    8 LTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGXXGGRLP 148
            LTGEFPGDYGWDTAGLSADPETFAKNRELEVIH RWAMLG  G   P
Sbjct:   69 LTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFP 115

HSP 2 Score: 63.1586 bits (152), Expect = 1.401e-30
Identity = 30/35 (85.71%), Postives = 31/35 (88.57%), Query Frame = 3

Query:  123 LXXXGGVFPEILSKNGVKFGEAVWFKAGAQIFSEG 227
            L   G VFPEILSKNGVKFGEAVWFKAG+QIFSEG
Sbjct:  107 LGALGCVFPEILSKNGVKFGEAVWFKAGSQIFSEG 141

[Close]

BLAST of CK934203 vs. ExPASy Swiss-Prot
Match: CB23_SOYBN (Chlorophyll a-b binding protein 3, chloroplastic OS=Glycine max GN=CAB3 PE=3 SV=1)

HSP 1 Score: 91.2781 bits (225), Expect = 1.401e-30
Identity = 42/47 (89.36%), Postives = 42/47 (89.36%), Query Frame = 2

Query:    8 LTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGXXGGRLP 148
            LTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLG  G   P
Sbjct:   67 LTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFP 113

HSP 2 Score: 61.2326 bits (147), Expect = 1.401e-30
Identity = 28/35 (80.00%), Postives = 31/35 (88.57%), Query Frame = 3

Query:  123 LXXXGGVFPEILSKNGVKFGEAVWFKAGAQIFSEG 227
            L   G VFPE+LS+NGVKFGEAVWFKAG+QIFSEG
Sbjct:  105 LGALGCVFPELLSRNGVKFGEAVWFKAGSQIFSEG 139

[Close]

BLAST of CK934203 vs. ExPASy Swiss-Prot
Match: CB21_MAIZE (Chlorophyll a-b binding protein 1, chloroplastic OS=Zea mays GN=CAB1 PE=3 SV=1)

HSP 1 Score: 91.2781 bits (225), Expect = 1.401e-30
Identity = 42/47 (89.36%), Postives = 42/47 (89.36%), Query Frame = 2

Query:    8 LTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGXXGGRLP 148
            LTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLG  G   P
Sbjct:   66 LTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFP 112

HSP 2 Score: 61.2326 bits (147), Expect = 1.401e-30
Identity = 28/35 (80.00%), Postives = 31/35 (88.57%), Query Frame = 3

Query:  123 LXXXGGVFPEILSKNGVKFGEAVWFKAGAQIFSEG 227
            L   G VFPE+LS+NGVKFGEAVWFKAG+QIFSEG
Sbjct:  104 LGALGCVFPELLSRNGVKFGEAVWFKAGSQIFSEG 138

[Close]

BLAST of CK934203 vs. ExPASy Swiss-Prot
Match: CB21_CUCSA (Chlorophyll a-b binding protein of LHCII type I, chloroplastic (Fragment) OS=Cucumis sativus PE=2 SV=1)

HSP 1 Score: 91.2781 bits (225), Expect = 1.402e-30
Identity = 42/47 (89.36%), Postives = 42/47 (89.36%), Query Frame = 2

Query:    8 LTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGXXGGRLP 148
            LTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLG  G   P
Sbjct:   59 LTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFP 105

HSP 2 Score: 61.2326 bits (147), Expect = 1.402e-30
Identity = 28/35 (80.00%), Postives = 31/35 (88.57%), Query Frame = 3

Query:  123 LXXXGGVFPEILSKNGVKFGEAVWFKAGAQIFSEG 227
            L   G VFPE+LS+NGVKFGEAVWFKAG+QIFSEG
Sbjct:   97 LGALGCVFPELLSRNGVKFGEAVWFKAGSQIFSEG 131

[Close]

BLAST of CK934203 vs. ExPASy Swiss-Prot
Match: CB21_PEA (Chlorophyll a-b binding protein AB96 (Fragment) OS=Pisum sativum GN=AB96 PE=1 SV=1)

HSP 1 Score: 91.2781 bits (225), Expect = 1.405e-30
Identity = 42/47 (89.36%), Postives = 42/47 (89.36%), Query Frame = 2

Query:    8 LTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGXXGGRLP 148
            LTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLG  G   P
Sbjct:   32 LTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFP 78

HSP 2 Score: 61.2326 bits (147), Expect = 1.405e-30
Identity = 28/35 (80.00%), Postives = 31/35 (88.57%), Query Frame = 3

Query:  123 LXXXGGVFPEILSKNGVKFGEAVWFKAGAQIFSEG 227
            L   G VFPE+LS+NGVKFGEAVWFKAG+QIFSEG
Sbjct:   70 LGALGCVFPELLSRNGVKFGEAVWFKAGSQIFSEG 104

The following BLAST results are available for this feature:

BLAST of CK934203 vs. ExPASy Swiss-Prot

BLAST of CK934203 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 59

ZOOM

x 1

POSITION

0


Match Name	E-value	Identity	Description
CB23_ORYSJ	3.742e-31	87.23	Chlorophyll a-b binding protein, chloroplastic OS=...	[more]
CB23_ORYSI	3.742e-31	87.23	Chlorophyll a-b binding protein, chloroplastic OS=...	[more]
CB21_LEMGI	1.076e-30	89.36	Chlorophyll a-b binding protein of LHCII type I, c...	[more]
CB2A_PYRPY	1.400e-30	89.36	Chlorophyll a-b binding protein 1A, chloroplastic ...	[more]
CB2A_PINSY	1.400e-30	89.36	Chlorophyll a-b binding protein type 2 member 1A, ...	[more]
CB21_GOSHI	1.401e-30	87.23	Chlorophyll a-b binding protein 151, chloroplastic...	[more]
CB23_SOYBN	1.401e-30	89.36	Chlorophyll a-b binding protein 3, chloroplastic O...	[more]
CB21_MAIZE	1.401e-30	89.36	Chlorophyll a-b binding protein 1, chloroplastic O...	[more]
CB21_CUCSA	1.402e-30	89.36	Chlorophyll a-b binding protein of LHCII type I, c...	[more]
CB21_PEA	1.405e-30	89.36	Chlorophyll a-b binding protein AB96 (Fragment) OS...	[more]

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Sequences

The following sequences are available for this feature:

EST sequence

EST sequence

>CK934203 ID=CK934203; Name=CK934203; organism=Citrus sinensis; type=EST; length=227bp
CATCATACTGACTGGTGAGTTCCCTGGTGACTATGGCTGGGATACCGCTG
GTTTATCAGCAGACCCCGAGACATTTGCTAAGAACCGTGAGCTAGAGGTG
ATCCACAGCAGATGGGCAATGCTTGGANNNNNGGGGGGGCGTCTTCCCTG
AAATCCTCTCCAAGAATGGAGTGAAGTTCGGCGAAGCAGTTTGGTTCAAG
GCTGGCGCTCAAATATTCTCTGAAGGT