CK934281

Overview
NameCK934281
Unique NameCK934281
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length886
Libraries
Library NameType
Developing fruit peel at 38 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CK934281 vs. ExPASy Swiss-Prot
Match: CHMP3_XENTR (Charged multivesicular body protein 3 OS=Xenopus tropicalis GN=vps24 PE=2 SV=3)

HSP 1 Score: 148.288 bits (373), Expect = 5.546e-35
Identity = 73/173 (42.20%), Postives = 110/173 (63.58%), Query Frame = 1
Query:  220 PQQLLRDWQRKLRQECRNIERQIRDIQREEKNVQKAIKDAAKRNDMSSAKSLAQELVRSRKTVNRLYENKAQMNSISMHLGESVAIARTVGHLNKSAEVMKLVNNLMKAPEVAATMQEFSKEMTKAGVIEEFVNDAVDTALDSXXXXXXXXXXVDKVLTAIAGETAAQLPEAV 738
            P+ L+ +W  K+R+E R I+RQIRDIQRE++ V+++IK++AK+ +  +   LA+E+V S+K VN+LY +KA MNS+ M +   +A+ R  G L KS EVMK + NL+K PE+ ATM++ SKEM KAG+IEE + D  +   D           +D++L  I      + P  V
Sbjct:   12 PKDLVNEWSLKIRKEMRLIDRQIRDIQREQEKVKRSIKESAKKGNREACVILAKEVVHSKKAVNKLYASKAHMNSVLMSMKNQLAVLRVSGSLQKSTEVMKAMQNLVKIPEIQATMRDLSKEMMKAGIIEEMLEDTFEGMEDQDEMEEQAEMEIDRILFEITAGALGKAPSKV 184          
BLAST of CK934281 vs. ExPASy Swiss-Prot
Match: CHMP3_DICDI (Charged multivesicular body protein 3 OS=Dictyostelium discoideum GN=chmp3 PE=3 SV=1)

HSP 1 Score: 139.043 bits (349), Expect = 3.365e-32
Identity = 74/189 (39.15%), Postives = 115/189 (60.85%), Query Frame = 1
Query:  211 KPNPQQLLRDWQRKLRQECRNIERQIRDIQREEKNVQKAIKDAAKRNDMSSAKSLAQELVRSRKTVNRLYENKAQMNSISMHLGESVAIARTVGHLNKSAEVMKLVNNLMKAPEVAATMQEFSKEMTKAGVIEEFVNDAVDTALDSXXXXXXXXXXVDKVLTAI--AGETAAQLP-EAVRKERVKQSAQ 768
            KP P++L++ W+R+LR+E R ++ Q+R I  +EK   + IK+  K  D  SAK+LA+E+V SRK   R+Y  KAQMNS+SM L  ++A+ +  G+L KS E+MK++N+L+K PE+   M     EMTKAG++EE ++D  D  +            V+K++  I  +G   +  P E  ++E V Q  Q
Sbjct:    7 KPTPEELVKKWKRELRREDRGLDTQLRAIDMQEKKTVRMIKERVKAGDQKSAKTLAKEIVNSRKAKERIYTAKAQMNSVSMQLQSNLAMTKVQGNLAKSTEIMKMMNDLIKLPELNKVMMAMGSEMTKAGIMEEMISDVFD--MQGEDLEEEAEMEVNKIMDEILVSGPQVSSAPLETHQQEEVVQEKQ 193          
BLAST of CK934281 vs. ExPASy Swiss-Prot
Match: VPS24_SCHPO (Vacuolar protein sorting-associated protein 24 OS=Schizosaccharomyces pombe GN=vps24 PE=2 SV=1)

HSP 1 Score: 100.138 bits (248), Expect = 1.732e-20
Identity = 46/133 (34.59%), Postives = 88/133 (66.17%), Query Frame = 1
Query:  214 PNPQQLLRDWQRKLRQECRNIERQIRDIQREEKNVQKAIKDAAKRNDMSSAKSLAQELVRSRKTVNRLYENKAQMNSISMHLGESVAIARTVGHLNKSAEVMKLVNNLMKAPEVAATMQEFSKEMTKAGVIEE 612
            P PQ+  R WQ  +R+E R ++RQ+  ++   K  +  +K  AK++D+++ + LA+E+ R+ +   RL E+KA + S+S+ L + +A+ +  G +  S ++M+ V++L++ P+++ TM+  S E+TKAGV+EE
Sbjct:   11 PTPQEQNRKWQSIIRKEQRQLDRQVYHLKAGRKKAEVQLKQLAKQSDITNMRILAKEIARANRHGKRLAESKALLGSLSLQLNDQMAMLKIQGTMQSSTKIMQDVSSLIRLPQLSETMRNLSMELTKAGVLEE 143          
BLAST of CK934281 vs. ExPASy Swiss-Prot
Match: VPS2C_ARATH (Vacuolar protein sorting-associated protein 2 homolog 3 OS=Arabidopsis thaliana GN=VPS2.3 PE=2 SV=1)

HSP 1 Score: 97.8265 bits (242), Expect = 8.596e-20
Identity = 55/181 (30.39%), Postives = 96/181 (53.04%), Query Frame = 1
Query:  193 MNMIKPKPNPQQLLRDWQRKLRQECRNIERQIRDIQREEKNVQKAIKDAAKRNDMSSAKSLAQELVRSRKTVNRLYENKAQMNSISMHLGESVAIARTVGHLNKSAEVMKLVNNLMKAPEVAATMQEFSKEMTKAGVIEEFVNDAVDTALDSXXXXXXXXXXVDKVLTAIAGETAAQLPEA 735
            MN+   KPNP+++LR+ +R++ Q  R IE++I  +Q EEK +   IK  AK  +  + K LA++L+R R+ +  L  ++AQM  I+ H     A       +  + + M  ++  M   + A  M+EF K+  +  +  E ++D++D ALD+           ++VL  I  + A+QL  A
Sbjct:    1 MNIFTKKPNPREVLRESKREMTQATRGIEKEIGSLQSEEKKLVLEIKRTAKSGNEGATKILARQLIRLRQQIANLQGSRAQMRGIATHTQAMHAHTSVAAGMQGATKAMAAMSKNMDPAKQAKVMREFQKQSAQMDMTTEMMSDSIDDALDNDEAEDETEDLTNQVLDEIGIDIASQLSSA 181          
BLAST of CK934281 vs. ExPASy Swiss-Prot
Match: VPS24_YEAST (Vacuolar protein-sorting-associated protein 24 OS=Saccharomyces cerevisiae GN=VPS24 PE=1 SV=1)

HSP 1 Score: 97.0561 bits (240), Expect = 1.466e-19
Identity = 47/144 (32.64%), Postives = 91/144 (63.19%), Query Frame = 1
Query:  214 PNPQQLLRDWQRKLRQECRNIERQIRDIQREEKNVQKAIKDAAKRNDMSSAKSLAQELVRSRKTVNRLYENKAQMNSISMHLGESVAIARTVGHLNKSAEVMKLVNNLMKAPEVAATMQEFSKEMTKAGVIEEFVNDAVDTALD 645
            P+P++  R  +  LR+  RNIE+ +R++   +   Q+ IK +AK+ND+ + +  A+EL +  K  +R+Y ++AQ++S+ M + E++ +      +  SA +M+ VN+L++ P++  TM E  KE+ K+G+I E V+D +++  D
Sbjct:   11 PDPKEQQRRIRSVLRKNGRNIEKSLRELTVLQNKTQQLIKKSAKKNDVRTVRLYAKELYQINKQYDRMYTSRAQLDSVRMKIDEAIRMNTLSNQMADSAGLMREVNSLVRLPQLRNTMIELEKELMKSGIISEMVDDTMESVGD 154          
BLAST of CK934281 vs. ExPASy Swiss-Prot
Match: CM2A2_DICDI (Charged multivesicular body protein 2a homolog 2 OS=Dictyostelium discoideum GN=chmp2a2 PE=3 SV=1)

HSP 1 Score: 91.2781 bits (225), Expect = 8.045e-18
Identity = 51/181 (28.18%), Postives = 94/181 (51.93%), Query Frame = 1
Query:  193 MNMIKPKPNPQQLLRDWQRKLRQECRNIERQIRDIQREEKNVQKAIKDAAKRNDMSSAKSLAQELVRSRKTVNRLYENKAQMNSISMHLGESVAIARTVGHLNKSAEVMKLVNNLMKAPEVAATMQEFSKEMTKAGVIEEFVNDAVDTALDSXXXXXXXXXXVDKVLTAIAGETAAQLPEA 735
            M +   +  P+++LR+ QR L +  R I+R+   +Q +EK +   IK  AK+  M+SAK +A++LVR+R  + + YE K Q+ ++S+ +    +       +    + M  +N  M  P+    M EF ++  K  + EE +ND +D  ++           +++VL  I  + A+QL +A
Sbjct:    1 MFLFGKQKTPKEVLRENQRNLNKSMREIDRERVALQNQEKKIILDIKKMAKQGQMNSAKIMAKDLVRTRYHIQKFYEMKTQLQAVSLRIQTLQSTQAMAEAMKGVTKAMITMNRQMNLPQFTKIMMEFEQQSDKMDMKEEMMNDTMDQVMEQDGEEEQSQEILNQVLDEIGIDLASQLVDA 181          
BLAST of CK934281 vs. ExPASy Swiss-Prot
Match: VPS2A_ARATH (Vacuolar protein sorting-associated protein 2 homolog 1 OS=Arabidopsis thaliana GN=VPS2.1 PE=2 SV=2)

HSP 1 Score: 88.5817 bits (218), Expect = 5.215e-17
Identity = 54/184 (29.35%), Postives = 97/184 (52.72%), Query Frame = 1
Query:  190 VMNMIKPK-PNPQQLLRDWQRKLRQECRNIERQIRDIQREEKNVQKAIKDAAKRNDMSSAKSLAQELVRSRKTVNRLYENKAQMNSISMHLGESVAIARTVGHLNKS-AEVMKLVNNLMKAPEVAATMQEFSKEMTKAGVIEEFVNDAVDTALDSXXXXXXXXXXVDKVLTAIAGETAAQLPEA 735
            +MN I  K   P +LLR+ +R L +  R IER+ + +Q +EK +   IK  AK+  M + K +A++L+R+R  + + Y+ K+Q+  +S+ + +++   + +G   K   + M  +N  M  P +   MQEF ++  K  ++ E + DA+D AL+           V +VL  I  +   +L  A
Sbjct:    1 MMNSIFGKRKTPAELLRENKRMLDKSIREIERERQGLQTQEKKLINEIKKTAKQGQMGAVKVMAKDLIRTRHQIEKFYKLKSQLQGVSLRI-QTLKSTQAMGEAMKGVTKAMGQMNRQMNLPSLQKIMQEFERQNEKMEMVSEVMGDAIDDALEGDEEEEETEDLVSQVLDEIGIDINQELVNA 183          
BLAST of CK934281 vs. ExPASy Swiss-Prot
Match: CHM2B_CHICK (Charged multivesicular body protein 2b OS=Gallus gallus GN=CHMP2B PE=2 SV=1)

HSP 1 Score: 87.8113 bits (216), Expect = 8.895e-17
Identity = 54/189 (28.57%), Postives = 94/189 (49.74%), Query Frame = 1
Query:  211 KPNPQQLLRDWQRKLRQECRNIERQIRDIQREEKNVQKAIKDAAKRNDMSSAKSLAQELVRSRKTVNRLYENKAQMNSISMHLGESVAIARTVGHLNKSAEVMKLVNNLMKAPEVAATMQEFSKEMTKAGVIEEFVNDAVDTALDSXXXXXXXXXXVDKVLTAIAGETAAQLPEAVRKERVKQSAQTSR 777
            K     ++++  R+LR   R I R    ++++E+ ++  IK  AK  +  + K LA++LV+ RK  NR Y   +++ S+S       +  +  G ++ +A+ M+ VN  M   +   TMQ F KE  K  + EE +ND +D   D+          V++VL  I  E + ++ +A    R   SA TS+
Sbjct:    7 KKTVDDIIKEQNRELRGTQRTITRDRAALEKQERQLELEIKKMAKTGNKEACKVLAKQLVQLRKQKNRTYAVSSKVTSMSTQTKVMNSQMKMAGAMSTTAKTMQAVNKKMDPQKTLQTMQNFQKENMKMEMTEEMINDTLDDIFDASDEEEESQDIVNQVLDEIGIEISGKMAKAPSAARGLPSASTSK 195          
BLAST of CK934281 vs. ExPASy Swiss-Prot
Match: VPS2B_ARATH (Vacuolar protein sorting-associated protein 2 homolog 2 OS=Arabidopsis thaliana GN=VPS2.2 PE=2 SV=2)

HSP 1 Score: 85.8853 bits (211), Expect = 3.380e-16
Identity = 51/181 (28.18%), Postives = 89/181 (49.17%), Query Frame = 1
Query:  193 MNMIKPKPNPQQLLRDWQRKLRQECRNIERQIRDIQREEKNVQKAIKDAAKRNDMSSAKSLAQELVRSRKTVNRLYENKAQMNSISMHLGESVAIARTVGHLNKSAEVMKLVNNLMKAPEVAATMQEFSKEMTKAGVIEEFVNDAVDTALDSXXXXXXXXXXVDKVLTAIAGETAAQLPEA 735
            MN+ K K  P+  LR  +R++    R IER+I  +Q EEK +   IK  AK  + ++ K LA++LVR R+ +  L  ++AQ+  ++ H     A       +  + + M  +N  M   + A  +++F K+  +  +  E +++A+D  LD            ++VL  I    A+QL  A
Sbjct:    1 MNIFKKKTTPKDALRTSKREMAVATRGIEREITSLQLEEKRLVAEIKKTAKTGNEAATKILARQLVRLRQQITNLQGSRAQIRGVTTHTQALYASTSISSGMKGATKAMVAMNKQMAPTKQAKVIKDFQKQSAQLDMTIEMMSEAIDETLDKDEAEEETEDLTNQVLDEIGVGVASQLSSA 181          
BLAST of CK934281 vs. ExPASy Swiss-Prot
Match: CH2BA_XENLA (Charged multivesicular body protein 2b-A OS=Xenopus laevis GN=chmp2b-A PE=2 SV=1)

HSP 1 Score: 83.9593 bits (206), Expect = 1.284e-15
Identity = 51/189 (26.98%), Postives = 93/189 (49.21%), Query Frame = 1
Query:  211 KPNPQQLLRDWQRKLRQECRNIERQIRDIQREEKNVQKAIKDAAKRNDMSSAKSLAQELVRSRKTVNRLYENKAQMNSISMHLGESVAIARTVGHLNKSAEVMKLVNNLMKAPEVAATMQEFSKEMTKAGVIEEFVNDAVDTALDSXXXXXXXXXXVDKVLTAIAGETAAQLPEAVRKERVKQSAQTSR 777
            K     +++D  ++L+ + R I R    ++++EK ++  IK  AK  +  + K LA++LV+ RK   R Y   +++ S+S       +  +  G ++ +A+ M+ VN  M   +   TMQ F KE  K  + EE +ND +D   D+          V++VL  I  E + ++ +A    +   SA  S+
Sbjct:    7 KKTVDDIIKDQNKELKGQQRAITRDRTALEKQEKQLEMEIKKMAKAGNKDACKVLAKQLVQLRKQKTRTYAVSSKVTSMSTQTKVMSSQMKMAGAMSTTAKTMQAVNKKMDPQKTLQTMQNFQKENMKMEMTEEMINDTLDDIFDASEDEEESQDIVNQVLDEIGIEISGKMAKAPSAAKGLPSASASK 195          
The following BLAST results are available for this feature:
BLAST of CK934281 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 34
Match NameE-valueIdentityDescription
CHMP3_XENTR5.546e-3542.20Charged multivesicular body protein 3 OS=Xenopus t... [more]
CHMP3_DICDI3.365e-3239.15Charged multivesicular body protein 3 OS=Dictyoste... [more]
VPS24_SCHPO1.732e-2034.59Vacuolar protein sorting-associated protein 24 OS=... [more]
VPS2C_ARATH8.596e-2030.39Vacuolar protein sorting-associated protein 2 homo... [more]
VPS24_YEAST1.466e-1932.64Vacuolar protein-sorting-associated protein 24 OS=... [more]
CM2A2_DICDI8.045e-1828.18Charged multivesicular body protein 2a homolog 2 O... [more]
VPS2A_ARATH5.215e-1729.35Vacuolar protein sorting-associated protein 2 homo... [more]
CHM2B_CHICK8.895e-1728.57Charged multivesicular body protein 2b OS=Gallus g... [more]
VPS2B_ARATH3.380e-1628.18Vacuolar protein sorting-associated protein 2 homo... [more]
CH2BA_XENLA1.284e-1526.98Charged multivesicular body protein 2b-A OS=Xenopu... [more]

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Properties
Property NameValue
Genbank descriptionCGF1004261_B12 Developing fruit peel at 38 DAFB Citrus sinensis cDNA clone P38DAB10004_IVF_B12 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK934281 ID=CK934281; Name=CK934281; organism=Citrus sinensis; type=EST; length=886bp
GGGGAGGCGTCCAGCGATCGACTGTTGCTGGACCTCAGAAAAATAAAAAT
TCAGAAAAAAAAGATACGAATTTGGATTGCGTTTGATGTTCAATTGATCG
GTTGCTGGAAAAAGAGAAGACTTCGAAGATCAGACGAGAAAAATTAGAAA
AAAATAATAGAGATAAAAAAAGCTAAGGAAATGGAAAAAGTTATGAACAT
GATAAAGCCAAAGCCTAATCCGCAACAGCTGTTGAGGGATTGGCAACGTA
AGCTTCGCCAAGAGTGCCGGAACATTGAGCGCCAAATTCGAGATATACAG
AGAGAAGAGAAAAATGTGCAGAAAGCAATTAAAGATGCTGCCAAGAGAAA
CGACATGAGCTCTGCCAAGTCTCTGGCTCAGGAACTCGTCAGATCTAGAA
AGACAGTTAACCGTCTCTATGAAAATAAGGCACAAATGAACTCAATATCG
ATGCACCTAGGAGAAAGTGTAGCGATTGCTCGTACTGTGGGGCATTTGAA
CAAGAGTGCTGAGGTTATGAAACTTGTCAACAATCTCATGAAGGCACCAG
AAGTAGCTGCTACAATGCAAGAGTTCAGCAAAGAAATGACCAAGGCTGGA
GTAATTGAGGAGTTTGTGAATGATGCTGTTGATACAGCACTGGACTCGGA
GGATATTGAAGAGGAGATAGAAGAAGAAGTTGATAAGGTCTTGACTGCAA
TTGCTGGTGAGACTGCAGCACAGCTGCCTGAAGCAGTTAGAAAGGAAAGG
GTGAAGCAATCTGCTCAGACATCTAGAGCAGCACAGGAGGAGGATGCTAT
TGCTGAGGGTATCGATGATGAGAAAGAACTTGAAGAAATAAGAGCCCGGC
TTNGCAAAGTTAGGTCATAACTTAAGCCTTTTNNNN
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