CK934281

Overview
NameCK934281
Unique NameCK934281
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length886
Libraries
Library NameType
Developing fruit peel at 38 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CK934281 vs. ExPASy Swiss-Prot
Match: CHM2A_DANRE (Charged multivesicular body protein 2a OS=Danio rerio GN=chmp2a PE=2 SV=1)

HSP 1 Score: 77.7962 bits (190), Expect = 9.205e-14
Identity = 41/161 (25.47%), Postives = 84/161 (52.17%), Query Frame = 1
Query:  211 KPNPQQLLRDWQRKLRQECRNIERQIRDIQREEKNVQKAIKDAAKRNDMSSAKSLAQELVRSRKTVNRLYENKAQMNSISMHLGESVAIARTVGHLNKSAEVMKLVNNLMKAPEVAATMQEFSKEMTKAGVIEEFVNDAVDTALDSXXXXXXXXXXVDKVL 693
            +  P+++LR  QR L +  R+++R+ + ++++EK +   IK  AK+  M + K +A++LVR+R+ V +    +A + ++S+ +    +       +    + M  +N  +K P++   M EF ++     + EE +NDA+D A+            V +VL
Sbjct:    8 RKTPEEMLRQNQRALNRAMRDLDRERQRLEQQEKKIIADIKKMAKQGQMDAVKIMAKDLVRTRRYVKKFIMMRANIQAVSLKIQTLKSNNSMAQAMKGVTKAMATMNRQLKLPQIQKIMMEFERQSEIMDMKEEMMNDAIDDAMGDEDDEEESDAVVSQVL 168          
BLAST of CK934281 vs. ExPASy Swiss-Prot
Match: CHM2A_CHICK (Charged multivesicular body protein 2a OS=Gallus gallus GN=CHMP2A PE=2 SV=1)

HSP 1 Score: 77.7962 bits (190), Expect = 9.205e-14
Identity = 46/166 (27.71%), Postives = 86/166 (51.81%), Query Frame = 1
Query:  211 KPNPQQLLRDWQRKLRQECRNIERQIRDIQREEKNVQKAIKDAAKRNDMSSAKSLAQELVRSRKTVNRLYENKAQMNSISMHL-----GESVAIARTVGHLNKSAEVMKLVNNLMKAPEVAATMQEFSKEMTKAGVIEEFVNDAVDTALDSXXXXXXXXXXVDKVL 693
            +  P++LLR  QR L +  R ++R+ + ++ +EK +   IK  AK+  M + K +A++LVR+R+ V +    +A + ++S+ +       S+A+A     +    + M  +N  +K P++   M EF K+     + EE +NDA+D A+            V +VL
Sbjct:    8 RKTPEELLRQNQRALTRAMRELDRERQKLEAQEKKIIIDIKKMAKQGQMDAVKIMAKDLVRTRRYVKKFITMRANVQAVSLKIQTLKSNNSMALA-----MKGVTKAMATMNRQLKLPQIQKIMMEFEKQAGIMDMKEELMNDAIDDAMGDEDDEEESDAVVSQVL 168          
BLAST of CK934281 vs. ExPASy Swiss-Prot
Match: CHM2A_MOUSE (Charged multivesicular body protein 2a OS=Mus musculus GN=Chmp2a PE=1 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 2.678e-13
Identity = 45/168 (26.79%), Postives = 86/168 (51.19%), Query Frame = 1
Query:  211 KPNPQQLLRDWQRKLRQECRNIERQIRDIQREEKNVQKAIKDAAKRNDMSSAKSLAQELVRSRKTVNRLYENKAQMNSISMHLGESVAIARTVGHLNKSAEVMK-------LVNNLMKAPEVAATMQEFSKEMTKAGVIEEFVNDAVDTALDSXXXXXXXXXXVDKVL 693
            +  P++LLR  QR L +  R ++R+ + ++ +EK +   IK  AK+  M + + +A++LVR+R+ V +    +A + ++S+ +       +T+   N  A+ MK        +N  +K P++   M EF ++     + EE +NDA+D A+            V +VL
Sbjct:    8 RKTPEELLRQNQRALNRAMRELDRERQKLETQEKKIIADIKKMAKQGQMDAVRIMAKDLVRTRRYVRKFVLMRANIQAVSLKI-------QTLKSNNSMAQAMKGVTKAMGTMNRQLKLPQIQKIMMEFERQAEIMDMKEEMMNDAIDDAMGDEEDEEESDAVVSQVL 168          
BLAST of CK934281 vs. ExPASy Swiss-Prot
Match: CHM2A_HUMAN (Charged multivesicular body protein 2a OS=Homo sapiens GN=CHMP2A PE=1 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 2.678e-13
Identity = 45/168 (26.79%), Postives = 86/168 (51.19%), Query Frame = 1
Query:  211 KPNPQQLLRDWQRKLRQECRNIERQIRDIQREEKNVQKAIKDAAKRNDMSSAKSLAQELVRSRKTVNRLYENKAQMNSISMHLGESVAIARTVGHLNKSAEVMK-------LVNNLMKAPEVAATMQEFSKEMTKAGVIEEFVNDAVDTALDSXXXXXXXXXXVDKVL 693
            +  P++LLR  QR L +  R ++R+ + ++ +EK +   IK  AK+  M + + +A++LVR+R+ V +    +A + ++S+ +       +T+   N  A+ MK        +N  +K P++   M EF ++     + EE +NDA+D A+            V +VL
Sbjct:    8 RKTPEELLRQNQRALNRAMRELDRERQKLETQEKKIIADIKKMAKQGQMDAVRIMAKDLVRTRRYVRKFVLMRANIQAVSLKI-------QTLKSNNSMAQAMKGVTKAMGTMNRQLKLPQIQKIMMEFERQAEIMDMKEEMMNDAIDDAMGDEEDEEESDAVVSQVL 168          
The following BLAST results are available for this feature:
BLAST of CK934281 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 34
Match NameE-valueIdentityDescription
CHM2A_DANRE9.205e-1425.47Charged multivesicular body protein 2a OS=Danio re... [more]
CHM2A_CHICK9.205e-1427.71Charged multivesicular body protein 2a OS=Gallus g... [more]
CHM2A_MOUSE2.678e-1326.79Charged multivesicular body protein 2a OS=Mus musc... [more]
CHM2A_HUMAN2.678e-1326.79Charged multivesicular body protein 2a OS=Homo sap... [more]

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Properties
Property NameValue
Genbank descriptionCGF1004261_B12 Developing fruit peel at 38 DAFB Citrus sinensis cDNA clone P38DAB10004_IVF_B12 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK934281 ID=CK934281; Name=CK934281; organism=Citrus sinensis; type=EST; length=886bp
GGGGAGGCGTCCAGCGATCGACTGTTGCTGGACCTCAGAAAAATAAAAAT
TCAGAAAAAAAAGATACGAATTTGGATTGCGTTTGATGTTCAATTGATCG
GTTGCTGGAAAAAGAGAAGACTTCGAAGATCAGACGAGAAAAATTAGAAA
AAAATAATAGAGATAAAAAAAGCTAAGGAAATGGAAAAAGTTATGAACAT
GATAAAGCCAAAGCCTAATCCGCAACAGCTGTTGAGGGATTGGCAACGTA
AGCTTCGCCAAGAGTGCCGGAACATTGAGCGCCAAATTCGAGATATACAG
AGAGAAGAGAAAAATGTGCAGAAAGCAATTAAAGATGCTGCCAAGAGAAA
CGACATGAGCTCTGCCAAGTCTCTGGCTCAGGAACTCGTCAGATCTAGAA
AGACAGTTAACCGTCTCTATGAAAATAAGGCACAAATGAACTCAATATCG
ATGCACCTAGGAGAAAGTGTAGCGATTGCTCGTACTGTGGGGCATTTGAA
CAAGAGTGCTGAGGTTATGAAACTTGTCAACAATCTCATGAAGGCACCAG
AAGTAGCTGCTACAATGCAAGAGTTCAGCAAAGAAATGACCAAGGCTGGA
GTAATTGAGGAGTTTGTGAATGATGCTGTTGATACAGCACTGGACTCGGA
GGATATTGAAGAGGAGATAGAAGAAGAAGTTGATAAGGTCTTGACTGCAA
TTGCTGGTGAGACTGCAGCACAGCTGCCTGAAGCAGTTAGAAAGGAAAGG
GTGAAGCAATCTGCTCAGACATCTAGAGCAGCACAGGAGGAGGATGCTAT
TGCTGAGGGTATCGATGATGAGAAAGAACTTGAAGAAATAAGAGCCCGGC
TTNGCAAAGTTAGGTCATAACTTAAGCCTTTTNNNN
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