CK934395

Overview
NameCK934395
Unique NameCK934395
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length724
Libraries
Library NameType
Developing fruit peel at 38 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CK934395 vs. ExPASy Swiss-Prot
Match: RPOB_SACOF (DNA-directed RNA polymerase subunit beta OS=Saccharum officinarum GN=rpoB PE=3 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 1.232e-12
Identity = 34/45 (75.56%), Postives = 38/45 (84.44%), Query Frame = 3
Query:  588 MLGDGNAGMSTIPGLNQIQFEGFCRFIDQGLTEELYKFPKIEDTD 722
            ML +GN GMSTIPG +QIQFEGFCRFI+QGL EEL KFP I+D D
Sbjct:    1 MLRNGNEGMSTIPGFSQIQFEGFCRFINQGLAEELEKFPTIKDPD 45          
BLAST of CK934395 vs. ExPASy Swiss-Prot
Match: RPOB_SACHY (DNA-directed RNA polymerase subunit beta OS=Saccharum hybrid GN=rpoB PE=2 SV=2)

HSP 1 Score: 73.559 bits (179), Expect = 1.232e-12
Identity = 34/45 (75.56%), Postives = 38/45 (84.44%), Query Frame = 3
Query:  588 MLGDGNAGMSTIPGLNQIQFEGFCRFIDQGLTEELYKFPKIEDTD 722
            ML +GN GMSTIPG +QIQFEGFCRFI+QGL EEL KFP I+D D
Sbjct:    1 MLRNGNEGMSTIPGFSQIQFEGFCRFINQGLAEELEKFPTIKDPD 45          
BLAST of CK934395 vs. ExPASy Swiss-Prot
Match: RPOB_ORYSJ (DNA-directed RNA polymerase subunit beta OS=Oryza sativa subsp. japonica GN=rpoB PE=3 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 1.232e-12
Identity = 34/45 (75.56%), Postives = 38/45 (84.44%), Query Frame = 3
Query:  588 MLGDGNAGMSTIPGLNQIQFEGFCRFIDQGLTEELYKFPKIEDTD 722
            ML +GN GMSTIPG +QIQFEGFCRFI+QGL EEL KFP I+D D
Sbjct:    1 MLRNGNEGMSTIPGFSQIQFEGFCRFINQGLAEELEKFPTIKDPD 45          
BLAST of CK934395 vs. ExPASy Swiss-Prot
Match: RPOB_ORYSI (DNA-directed RNA polymerase subunit beta OS=Oryza sativa subsp. indica GN=rpoB PE=3 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 1.232e-12
Identity = 34/45 (75.56%), Postives = 38/45 (84.44%), Query Frame = 3
Query:  588 MLGDGNAGMSTIPGLNQIQFEGFCRFIDQGLTEELYKFPKIEDTD 722
            ML +GN GMSTIPG +QIQFEGFCRFI+QGL EEL KFP I+D D
Sbjct:    1 MLRNGNEGMSTIPGFSQIQFEGFCRFINQGLAEELEKFPTIKDPD 45          
BLAST of CK934395 vs. ExPASy Swiss-Prot
Match: RPOB_ORYSA (DNA-directed RNA polymerase subunit beta OS=Oryza sativa GN=rpoB PE=3 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 1.232e-12
Identity = 34/45 (75.56%), Postives = 38/45 (84.44%), Query Frame = 3
Query:  588 MLGDGNAGMSTIPGLNQIQFEGFCRFIDQGLTEELYKFPKIEDTD 722
            ML +GN GMSTIPG +QIQFEGFCRFI+QGL EEL KFP I+D D
Sbjct:    1 MLRNGNEGMSTIPGFSQIQFEGFCRFINQGLAEELEKFPTIKDPD 45          
BLAST of CK934395 vs. ExPASy Swiss-Prot
Match: RPOB_ORYNI (DNA-directed RNA polymerase subunit beta OS=Oryza nivara GN=rpoB PE=3 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 1.232e-12
Identity = 34/45 (75.56%), Postives = 38/45 (84.44%), Query Frame = 3
Query:  588 MLGDGNAGMSTIPGLNQIQFEGFCRFIDQGLTEELYKFPKIEDTD 722
            ML +GN GMSTIPG +QIQFEGFCRFI+QGL EEL KFP I+D D
Sbjct:    1 MLRNGNEGMSTIPGFSQIQFEGFCRFINQGLAEELEKFPTIKDPD 45          
BLAST of CK934395 vs. ExPASy Swiss-Prot
Match: RPOB_MAIZE (DNA-directed RNA polymerase subunit beta OS=Zea mays GN=rpoB PE=3 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 1.232e-12
Identity = 34/45 (75.56%), Postives = 38/45 (84.44%), Query Frame = 3
Query:  588 MLGDGNAGMSTIPGLNQIQFEGFCRFIDQGLTEELYKFPKIEDTD 722
            ML +GN GMSTIPG +QIQFEGFCRFI+QGL EEL KFP I+D D
Sbjct:    1 MLRNGNEGMSTIPGFSQIQFEGFCRFINQGLAEELEKFPTIKDPD 45          
BLAST of CK934395 vs. ExPASy Swiss-Prot
Match: RPOB_CALFG (DNA-directed RNA polymerase subunit beta OS=Calycanthus floridus var. glaucus GN=rpoB PE=3 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 1.232e-12
Identity = 33/37 (89.19%), Postives = 35/37 (94.59%), Query Frame = 3
Query:  612 MSTIPGLNQIQFEGFCRFIDQGLTEELYKFPKIEDTD 722
            M TIPG +QIQFEGFCRFIDQGLTEEL+KFPKIEDTD
Sbjct:    1 MPTIPGFSQIQFEGFCRFIDQGLTEELHKFPKIEDTD 37          
BLAST of CK934395 vs. ExPASy Swiss-Prot
Match: RPOB_HELAN (DNA-directed RNA polymerase subunit beta OS=Helianthus annuus GN=rpoB PE=3 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 3.586e-12
Identity = 33/37 (89.19%), Postives = 34/37 (91.89%), Query Frame = 3
Query:  612 MSTIPGLNQIQFEGFCRFIDQGLTEELYKFPKIEDTD 722
            MSTIPG NQIQFEGFCRFIDQGL EEL KFPKIEDT+
Sbjct:    1 MSTIPGFNQIQFEGFCRFIDQGLAEELSKFPKIEDTN 37          
BLAST of CK934395 vs. ExPASy Swiss-Prot
Match: RPOB_ARATH (DNA-directed RNA polymerase subunit beta OS=Arabidopsis thaliana GN=rpoB PE=3 SV=3)

HSP 1 Score: 72.0182 bits (175), Expect = 3.586e-12
Identity = 35/45 (77.78%), Postives = 35/45 (77.78%), Query Frame = 3
Query:  588 MLGDGNAGMSTIPGLNQIQFEGFCRFIDQGLTEELYKFPKIEDTD 722
            MLGD   G S IPG NQIQFEGF RFIDQGL EEL KFPKIED D
Sbjct:    1 MLGDEKEGTSAIPGFNQIQFEGFYRFIDQGLIEELAKFPKIEDID 45          
The following BLAST results are available for this feature:
BLAST of CK934395 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 76
Match NameE-valueIdentityDescription
RPOB_SACOF1.232e-1275.56DNA-directed RNA polymerase subunit beta OS=Saccha... [more]
RPOB_SACHY1.232e-1275.56DNA-directed RNA polymerase subunit beta OS=Saccha... [more]
RPOB_ORYSJ1.232e-1275.56DNA-directed RNA polymerase subunit beta OS=Oryza ... [more]
RPOB_ORYSI1.232e-1275.56DNA-directed RNA polymerase subunit beta OS=Oryza ... [more]
RPOB_ORYSA1.232e-1275.56DNA-directed RNA polymerase subunit beta OS=Oryza ... [more]
RPOB_ORYNI1.232e-1275.56DNA-directed RNA polymerase subunit beta OS=Oryza ... [more]
RPOB_MAIZE1.232e-1275.56DNA-directed RNA polymerase subunit beta OS=Zea ma... [more]
RPOB_CALFG1.232e-1289.19DNA-directed RNA polymerase subunit beta OS=Calyca... [more]
RPOB_HELAN3.586e-1289.19DNA-directed RNA polymerase subunit beta OS=Helian... [more]
RPOB_ARATH3.586e-1277.78DNA-directed RNA polymerase subunit beta OS=Arabid... [more]

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Properties
Property NameValue
Genbank descriptionCGF1004259_E06 Developing fruit peel at 38 DAFB Citrus sinensis cDNA clone P38DAB10004_IIF_E06 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK934395 ID=CK934395; Name=CK934395; organism=Citrus sinensis; type=EST; length=724bp
GGGTGCAATAAAGGGGGGCGATGTATATATAGATAGCTATATCGGCACGG
GTTTACTAAATACAAGCCGTCTTACGCACTTCAATCCTATTCTAAAAATT
CGACTAAAAAAATAAAAAGGGGGTTCTTCGCAAATCATTTTTTGAACAGT
GGAATCCACGAAAAAGGTAAGTGCTAAAAAAATGAGCTTTACGCTGGTAT
ATTGTGTCTGATTCTTATGTCTTTATCTTAGCGAATAGATCAAATCACGA
CGTTTATTTTTCTGGTATCCTAACGGATTGGAATATCATAATAATGGTAT
AAATTGAATTATTTTTTTGATTCTATACAAAACTCCGTAAGTCTAAGTGG
AATTTATCGCTTCCTTTCCATTTGGATCTGTCTCTTAGAAATTCCAATTT
TATTAAGTATAAAATCATCCTTTTTCCCCCGTTCATACGTATTTCATACA
TTCCATCTATATGGAGTTGGGTAAAATTTCATGCGATTCAGTAAACAGAA
TCTAAATTCCAGCATTCTGCATCGAATCATATGAATCGATGCAGAATGAG
AAACGAATGGGATTTTTTGATAAATGGGAAATTCAAAATGCTCGGAGATG
GAAATGCAGGAATGTCTACAATACCTGGGTTGAATCAGATACAATTTGAA
GGATTTTGTAGGTTCATTGATCAGGGCTTAACAGAAGAGCTTTATAAGTT
TCCAAAAATTGAAGATACAGATTA
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