CK934401
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CK934401 vs. ExPASy Swiss-Prot
Match: CB4B_SOLLC (Chlorophyll a-b binding protein CP24 10B, chloroplastic OS=Solanum lycopersicum GN=CAP10B PE=3 SV=1) HSP 1 Score: 103.219 bits (256), Expect = 1.859e-21 Identity = 75/228 (32.89%), Postives = 103/228 (45.18%), Query Frame = 1 Query: 241 PEWLDGTMVGDRGFDPLGLGKPTEYLQYDFDSLDQNLAKNDVGELLGVITDSGELQPTPLQPYTEVFGLQRFRECELIHGRWAMLGTLGAIAVEALTGVAWQDAGKVELVEGSSYLGQPLPFSLTTLIWIEVIVIGYIEYQR-----------------------NAELDPVKRLYPGG-YFDPLGLAS---------DPGKLENLQLAEIKHARLAMVAFLIFGIQA 825 PEWLDG++ GD GFDPLGLGK +L++ +RE ELIHGRWAM LG +A +G+ W +AG + G PFS +L+ +++++G++E +R N ++ YPGG +FDPL LA D KLE L+LAEIKH+RLAM+A LIF +A Sbjct: 68 PEWLDGSLPGDFGFDPLGLGKDPAFLKW-------------------------------------------YREAELIHGRWAMAAVLGIFVGQAWSGIPWFEAG--------ADPGAIAPFSFGSLLGTQLLLMGWVESKRWVDFFDNDSQSIDWATPWSKTAENFANFTGEQGYPGGKFFDPLALAGTLNNGVYVPDTEKLERLKLAEIKHSRLAMLAMLIFYFEA 244
BLAST of CK934401 vs. ExPASy Swiss-Prot
Match: CB26_ARATH (Chlorophyll a-b binding protein CP26, chloroplastic OS=Arabidopsis thaliana GN=LHCB5 PE=2 SV=1) HSP 1 Score: 102.064 bits (253), Expect = 4.142e-21 Identity = 75/206 (36.41%), Postives = 99/206 (48.06%), Query Frame = 1 Query: 241 PEWLDGTMVGDRGFDPLGLGKPTEYLQYDFDSLDQNLAKNDVGELLGVITDSGELQPTPLQPYTEVFGLQRFRECELIHGRWAMLGTLGAIAVEALTG--------VAWQDAGKVELVEGSS--YLGQPLPFSLTTLIWIEVIVIGYIEYQRNAE-LDPVKRLYPGGYFDPLGLASDPGKLENLQLAEIKHARLAMVAFLIFGIQA 825 PE+L+G + GD G+DP GLGK E N AK ++ ELIH RWAMLG G I EAL W G + L++G++ Y G+ +P +L + EV+++G EY R LD +L+PGG FDPLGLA DP + L++ EIK+ RLAM A L F IQA Sbjct: 82 PEYLNGEVAGDYGYDPFGLGKKPE-----------NFAK--------------------------------YQAFELIHARWAMLGAAGFIIPEALNKYGANCGPEAVWFKTGAL-LLDGNTLNYFGKNIPINLVLAVVAEVVLLGGAEYYRITNGLDFEDKLHPGGPFDPLGLAKDPEQGALLKVKEIKNGRLAMFAMLGFFIQA 243
BLAST of CK934401 vs. ExPASy Swiss-Prot
Match: CB2_DUNTE (Chlorophyll a-b binding protein of LHCII type I, chloroplastic OS=Dunaliella tertiolecta PE=2 SV=1) HSP 1 Score: 88.5817 bits (218), Expect = 4.740e-17 Identity = 58/142 (40.85%), Postives = 78/142 (54.93%), Query Frame = 1 Query: 451 RFRECELIHGRWAMLGTLGAIAVEALTGVA--------WQDAGKVELVEGS-SYLGQPLPF---SLTTLIWIEVIVIGYIE-YQRNAE----LDPVKRLYPGGYFDPLGLASDPGKLENLQLAEIKHARLAMVAFLIFGIQA 825 R+RE ELIH RWA+LG LG + E L+ A W AG +G +YLG S+ + ++V+++G E Y+ N LD + LYPGG FDPLGLA DP L++ EIK+ RLAM + L F +QA Sbjct: 78 RYREIELIHARWALLGALGILTPELLSQYAGVQFGEPVWFKAGAQIFADGGLNYLGNESLIHAQSIIATLAVQVVLMGLAEAYRANGGSEGFLDDLDTLYPGGPFDPLGLADDPDTFAELKVKEIKNGRLAMFSCLGFFVQA 219
BLAST of CK934401 vs. ExPASy Swiss-Prot
Match: CB22_ORYSJ (Chlorophyll a-b binding protein 2, chloroplastic OS=Oryza sativa subsp. japonica GN=CAB2R PE=2 SV=2) HSP 1 Score: 88.1965 bits (217), Expect = 6.190e-17 Identity = 76/227 (33.48%), Postives = 98/227 (43.17%), Query Frame = 1 Query: 193 PTRDSDRLVWFP--GATPPEWLDGTMVGDRGFDPLGLGKPTEYLQYDFDSLDQNLAKNDVGELLGVITDSGELQPTPLQPYTEVFGLQRFRECELIHGRWAMLGTLGAIAVEALT--GV-----AWQDAGKVELVEGS-SYLGQPLPFSLTTL--IW-IEVIVIGYIEYQRNAEL---DPVKRLYPGGYFDPLGLASDPGKLENLQLAEIKHARLAMVAFLIFGIQA 825 P +DR+++ PP +L G GD G+D GL E AKN RE E+IH RWAMLG LG + E L GV W AG EG YLG P ++ IW ++V+++G +E R A + V LYPGG FDPLGLA DP L++ EIK+ RLAM + F +QA Sbjct: 44 PWYGADRVLYLGPLSGEPPSYLTGEFPGDYGWDTAGLSADPE-----------TFAKN--------------------------------RELEVIHSRWAMLGALGCVFPELLARNGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLIHAQSILAIWAVQVVLMGAVEGYRIAGGPLGEVVDPLYPGGSFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQA 227
BLAST of CK934401 vs. ExPASy Swiss-Prot
Match: CB21_ORYSJ (Chlorophyll a-b binding protein 1, chloroplastic OS=Oryza sativa subsp. japonica GN=CAB1R PE=2 SV=2) HSP 1 Score: 88.1965 bits (217), Expect = 6.190e-17 Identity = 76/227 (33.48%), Postives = 98/227 (43.17%), Query Frame = 1 Query: 193 PTRDSDRLVWFP--GATPPEWLDGTMVGDRGFDPLGLGKPTEYLQYDFDSLDQNLAKNDVGELLGVITDSGELQPTPLQPYTEVFGLQRFRECELIHGRWAMLGTLGAIAVEALT--GV-----AWQDAGKVELVEGS-SYLGQPLPFSLTTL--IW-IEVIVIGYIEYQRNAEL---DPVKRLYPGGYFDPLGLASDPGKLENLQLAEIKHARLAMVAFLIFGIQA 825 P +DR+++ PP +L G GD G+D GL E AKN RE E+IH RWAMLG LG + E L GV W AG EG YLG P ++ IW ++V+++G +E R A + V LYPGG FDPLGLA DP L++ EIK+ RLAM + F +QA Sbjct: 48 PWYGADRVLYLGPLSGEPPSYLTGEFPGDYGWDTAGLSADPE-----------TFAKN--------------------------------RELEVIHSRWAMLGALGCVFPELLARNGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLIHAQSILAIWAVQVVLMGAVEGYRIAGGPLGEVVDPLYPGGAFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQA 231
BLAST of CK934401 vs. ExPASy Swiss-Prot
Match: CB21_SINAL (Chlorophyll a-b binding protein 1, chloroplastic OS=Sinapis alba GN=CAB1 PE=3 SV=1) HSP 1 Score: 86.2705 bits (212), Expect = 2.352e-16 Identity = 76/228 (33.33%), Postives = 97/228 (42.54%), Query Frame = 1 Query: 193 PTRDSDRLVWFP--GATPPEWLDGTMVGDRGFDPLGLGKPTEYLQYDFDSLDQNLAKNDVGELLGVITDSGELQPTPLQPYTEVFGLQRFRECELIHGRWAMLGTLGAIAVEALT--GV-----AWQDAGKVELVEGS-SYLGQPLPFSLTTLIWI---EVIVIGYIEYQRNAELDPVKR----LYPGGYFDPLGLASDPGKLENLQLAEIKHARLAMVAFLIFGIQA 825 P SDR+ + PP +L G GD G+D GL E A+N RE E+IH RWAMLG LG + E L GV W AG EG YLG P +++ I +VI++G +E R A P+ LYPGG FDPLGLA+DP L++ EIK+ RLAM + F +QA Sbjct: 48 PWYGSDRVKYLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPE-----------TFARN--------------------------------RELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWATQVILMGAVEGYRVAGEGPLGEAEDLLYPGGSFDPLGLATDPEAFAELKVKEIKNGRLAMFSMFGFFVQA 232
BLAST of CK934401 vs. ExPASy Swiss-Prot
Match: CB23_POLMU (Chlorophyll a-b binding protein type 1 member F3, chloroplastic OS=Polystichum munitum GN=CABF3 PE=3 SV=1) HSP 1 Score: 85.8853 bits (211), Expect = 3.072e-16 Identity = 72/211 (34.12%), Postives = 92/211 (43.60%), Query Frame = 1 Query: 235 TPPEWLDGTMVGDRGFDPLGLGKPTEYLQYDFDSLDQNLAKNDVGELLGVITDSGELQPTPLQPYTEVFGLQRFRECELIHGRWAMLGTLGAIAVEALT--GV-----AWQDAGKVELVEGS-SYLGQPLPFSLTTLIWI---EVIVIGYIEYQRNA--ELDPVKR-LYPGGYFDPLGLASDPGKLENLQLAEIKHARLAMVAFLIFGIQA 825 +PP +L G GD G+D GL E AKN RE E+IH RWAMLG LG + E L GV W AG EG YLG P +++ I +VI++G +E R A L V+ +YPGG FDPLGLA DP L++ E+K+ RLAM + F +QA Sbjct: 64 SPPSYLSGEFPGDYGWDTAGLSADPE-----------TFAKN--------------------------------RELEVIHSRWAMLGALGCVTPELLAKNGVKFGEAVWFKAGSQIFAEGGLDYLGNPSLVHAQSILAIWACQVILMGAVEGYRVAGGPLGEVEDPIYPGGSFDPLGLADDPEAFAELKVKELKNGRLAMFSMFGFFVQA 231
BLAST of CK934401 vs. ExPASy Swiss-Prot
Match: CB215_PEA (Chlorophyll a-b binding protein 215, chloroplastic OS=Pisum sativum GN=CAB215 PE=1 SV=1) HSP 1 Score: 85.8853 bits (211), Expect = 3.072e-16 Identity = 59/142 (41.55%), Postives = 75/142 (52.82%), Query Frame = 1 Query: 451 RFRECELIHGRWAMLGTLGAIAVEAL--TGV-----AWQDAGKVELVEGS-SYLGQPLPFSLTTLIWI---EVIVIGYIEYQR------NAELDPVKRLYPGGYFDPLGLASDPGKLENLQLAEIKHARLAMVAFLIFGIQA 825 R RE E+IH RWAMLG LG E L GV W AG EG YLG P +++ I +V+++G++E R LDP LYPGG FDPLGLA DP L++ E+K+ RLAM + F +QA Sbjct: 93 RNRELEVIHSRWAMLGALGCTFPELLEKNGVKFGEAVWFKAGSQIFAEGGLDYLGNPNLIHAQSILAIWATQVVLMGFVEGYRVGGGPLGEGLDP---LYPGGAFDPLGLADDPDSFAELKVKELKNGRLAMFSMFGFFVQA 231
BLAST of CK934401 vs. ExPASy Swiss-Prot
Match: CB2B_PINSY (Chlorophyll a-b binding protein type 2 member 1B, chloroplastic OS=Pinus sylvestris PE=2 SV=1) HSP 1 Score: 85.5001 bits (210), Expect = 4.012e-16 Identity = 74/213 (34.74%), Postives = 91/213 (42.72%), Query Frame = 1 Query: 238 PPEWLDGTMVGDRGFDPLGLGKPTEYLQYDFDSLDQNLAKNDVGELLGVITDSGELQPTPLQPYTEVFGLQRFRECELIHGRWAMLGTLGAIAVEALT--GV-----AWQDAGKVELVEGS-SYLGQPLPFSLTTLIWI---EVIVIGYIEYQRNAE------LDPVKRLYPGGYFDPLGLASDPGKLENLQLAEIKHARLAMVAFLIFGIQA 825 PP +L G GD G+D GL E N AKN RE E+IH RWAMLG LG + E L GV W AG EG YLG P +++ I +VI++G +E R A DP+ YPGG FDPLGLA DP L++ EIK+ RLAM + F +QA Sbjct: 74 PPSYLTGEFPGDYGWDTAGLSADPE-----------NFAKN--------------------------------RELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGAQIFSEGGLDYLGNPSLVHAQSILAIWACQVILMGAVEGYRIAGGPLGEVTDPI---YPGGSFDPLGLAEDPEAFAELKVKEIKNGRLAMFSMFGFFVQA 240
BLAST of CK934401 vs. ExPASy Swiss-Prot
Match: CB2A_PINSY (Chlorophyll a-b binding protein type 2 member 1A, chloroplastic OS=Pinus sylvestris PE=2 SV=1) HSP 1 Score: 85.5001 bits (210), Expect = 4.012e-16 Identity = 74/213 (34.74%), Postives = 90/213 (42.25%), Query Frame = 1 Query: 238 PPEWLDGTMVGDRGFDPLGLGKPTEYLQYDFDSLDQNLAKNDVGELLGVITDSGELQPTPLQPYTEVFGLQRFRECELIHGRWAMLGTLGAIAVEALT--GV-----AWQDAGKVELVEGS-SYLGQPLPFSLTTLIWI---EVIVIGYIEYQRNAE------LDPVKRLYPGGYFDPLGLASDPGKLENLQLAEIKHARLAMVAFLIFGIQA 825 PP +L G GD G+D GL E AKN RE E+IH RWAMLG LG + E L GV W AG EG YLG P +++ I +VI++G IE R A DP+ YPGG FDPLGLA DP L++ EIK+ RLAM + F +QA Sbjct: 78 PPSYLTGEFPGDYGWDTAGLSADPE-----------TFAKN--------------------------------RELEVIHSRWAMLGALGCVFPELLARNGVKFGEAVWFKAGAQIFSEGGLDYLGSPQLIHAQSILAIWACQVILMGAIEGYRVAGGPLGEVTDPI---YPGGNFDPLGLADDPDAFAELKVKEIKNGRLAMFSMFGFFVQA 244 The following BLAST results are available for this feature:
BLAST of CK934401 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 67
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Sequences
The
following sequences are available for this feature:
EST sequence >CK934401 ID=CK934401; Name=CK934401; organism=Citrus sinensis; type=EST; length=832bpback to top |