CK934401
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CK934401 vs. ExPASy Swiss-Prot
Match: CB4C_ARATH (Chlorophyll a-b binding protein CP29.3, chloroplastic OS=Arabidopsis thaliana GN=LHCB4.3 PE=1 SV=1) HSP 1 Score: 382.489 bits (981), Expect = 1.588e-105 Identity = 185/255 (72.55%), Postives = 210/255 (82.35%), Query Frame = 1 Query: 79 SHFFGTRIHGAVVKQRSGKFQARXXXXXXXXXXXXXXXPTR----DSDRLVWFPGATPPEWLDGTMVGDRGFDPLGLGKPTEYLQYDFDSLDQNLAKNDVGELLGVITDSGELQPTPLQPYTEVFGLQRFRECELIHGRWAMLGTLGAIAVEALTGVAWQDAGKVELVEGSSYLGQPLPFSLTTLIWIEVIVIGYIEYQRNAELDPVKRLYPGGYFDPLGLASDPGKLENLQLAEIKHARLAMVAFLIFGIQAAF 831 S FG RI + +G+ QAR +R D DRLVWFPGA PPEWLDG+M+GDRGFDP GLGKP EYLQYDFD LDQNLAKN G+++G+I +S E++PTP QPYTEVFG+QRFRECELIHGRWAMLGTLGAIAVEALTG+AWQDAGKVELVEGSSYLGQPLPFSLTTLIWIEV+V+GYIE+QRN+ELDP KR+YPGGYFDPLGLA+DP KL+ L+LAEIKH+RLAMVAFLIF +QAAF Sbjct: 10 SGIFGIRIQDP--RPGTGRVQARFGFSFGKKKPAPPPKKSRQVQDDGDRLVWFPGANPPEWLDGSMIGDRGFDPFGLGKPAEYLQYDFDGLDQNLAKNVAGDIIGIIQESSEIKPTPFQPYTEVFGIQRFRECELIHGRWAMLGTLGAIAVEALTGIAWQDAGKVELVEGSSYLGQPLPFSLTTLIWIEVLVVGYIEFQRNSELDPEKRIYPGGYFDPLGLAADPEKLDTLKLAEIKHSRLAMVAFLIFALQAAF 262
BLAST of CK934401 vs. ExPASy Swiss-Prot
Match: CB4A_ARATH (Chlorophyll a-b binding protein CP29.1, chloroplastic OS=Arabidopsis thaliana GN=LHCB4.1 PE=1 SV=1) HSP 1 Score: 332.798 bits (852), Expect = 1.443e-90 Identity = 165/251 (65.74%), Postives = 194/251 (77.29%), Query Frame = 1 Query: 79 SHFFGTRIHGAVVKQRSGKFQARXXXXXXXXXXXXXXXPTRDSDRLVWFPGATPPEWLDGTMVGDRGFDPLGLGKPTEYLQYDFDSLDQNLAKNDVGELLGVITDSGELQPTPLQPYTEVFGLQRFRECELIHGRWAMLGTLGAIAVEALTGVAWQDAGKVELVEGSSYLGQPLPFSLTTLIWIEVIVIGYIEYQRNAELDPVKRLYPGG-YFDPLGLASDPGKLENLQLAEIKHARLAMVAFLIFGIQAA 828 S GTR+ + SG+F A T +DR +W+PGA P+WLDG++VGD GFDP GLGKP EYLQ+D DSLDQNLAKN G+++G T++ + + TP QPY+EVFG+QRFRECELIHGRWAML TLGA++VE LTGV WQDAGKVELV+GSSYLGQPLPFS++TLIWIEV+VIGYIE+QRNAELD KRLYPGG +FDPLGLA+DP K LQLAEIKHARLAMVAFL F +QAA Sbjct: 12 SSIMGTRVAPGI-HPGSGRFTAVFGFGKKKAAPKKSAKKTVTTDRPLWYPGAISPDWLDGSLVGDYGFDPFGLGKPAEYLQFDIDSLDQNLAKNLAGDVIGTRTEAADAKSTPFQPYSEVFGIQRFRECELIHGRWAMLATLGALSVEWLTGVTWQDAGKVELVDGSSYLGQPLPFSISTLIWIEVLVIGYIEFQRNAELDSEKRLYPGGKFFDPLGLAADPEKTAQLQLAEIKHARLAMVAFLGFAVQAA 261
BLAST of CK934401 vs. ExPASy Swiss-Prot
Match: CB4B_ARATH (Chlorophyll a-b binding protein CP29.2, chloroplastic OS=Arabidopsis thaliana GN=LHCB4.2 PE=1 SV=1) HSP 1 Score: 328.561 bits (841), Expect = 2.721e-89 Identity = 161/209 (77.03%), Postives = 180/209 (86.12%), Query Frame = 1 Query: 205 SDRLVWFPGATPPEWLDGTMVGDRGFDPLGLGKPTEYLQYDFDSLDQNLAKNDVGELLGVITDSGELQPTPLQPYTEVFGLQRFRECELIHGRWAMLGTLGAIAVEALTGVAWQDAGKVELVEGSSYLGQPLPFSLTTLIWIEVIVIGYIEYQRNAELDPVKRLYPGG-YFDPLGLASDPGKLENLQLAEIKHARLAMVAFLIFGIQAA 828 SDR +WFPGA PE+LDG++VGD GFDP GLGKP EYLQ+D DSLDQNLAKN GE++G T++ + + TP QPY+EVFGLQRFRECELIHGRWAML TLGAI VE LTGV WQDAGKVELV+GSSYLGQPLPFS++TLIWIEV+VIGYIE+QRNAELD KRLYPGG +FDPLGLASDP K LQLAEIKHARLAMV FL F +QAA Sbjct: 50 SDRPLWFPGAKSPEYLDGSLVGDYGFDPFGLGKPAEYLQFDLDSLDQNLAKNLYGEVIGTRTEAVDPKSTPFQPYSEVFGLQRFRECELIHGRWAMLATLGAITVEWLTGVTWQDAGKVELVDGSSYLGQPLPFSISTLIWIEVLVIGYIEFQRNAELDSEKRLYPGGKFFDPLGLASDPVKKAQLQLAEIKHARLAMVGFLGFAVQAA 258
BLAST of CK934401 vs. ExPASy Swiss-Prot
Match: CB29_CHLRE (Chlorophyll a-b binding protein CP29 OS=Chlamydomonas reinhardtii GN=Lhcb4 PE=1 SV=3) HSP 1 Score: 239.58 bits (610), Expect = 1.662e-62 Identity = 121/206 (58.74%), Postives = 148/206 (71.84%), Query Frame = 1 Query: 217 VWFPGATPPEWLDGTMVGDRGFDPLGLGKPTEYLQYDFDSLDQNLAKNDVGELLGVI--TDSGELQPTPLQPYTEVFGLQRFRECELIHGRWAMLGTLGAIAVEALTGVAWQDAGKVELVEGSSYLGQPLPFSLTTLIWIEVIVIGYIEYQRNAELDPVKRLYPGGYFDPLGLAS-DPGKLENLQLAEIKHARLAMVAFLIFGIQA 825 +W P T PEWLDG++ GDRGFDPLGL KP+E++ D DQN AKN+ G + ++ T L PY+EVFGL RFRECELIHGRWAML LGA+ EA TGV+W +AGKVEL +G+SY G LPFS+T LIWIEVI++G E+ RN+E +P KR YPGG FDPL LAS D + L+ AEIKHARLAMV+F +G+QA Sbjct: 52 LWLPNTTRPEWLDGSLPGDRGFDPLGLSKPSEFVVIGVDENDQNAAKNNKGSVEAIVQATPDEVSSENRLAPYSEVFGLARFRECELIHGRWAMLACLGALVAEATTGVSWVEAGKVEL-DGASYAGLSLPFSITQLIWIEVILVGGAEFYRNSETNPEKRCYPGGVFDPLKLASEDEERAFRLKTAEIKHARLAMVSFFGYGVQA 256
BLAST of CK934401 vs. ExPASy Swiss-Prot
Match: CB11_SOLLC (Chlorophyll a-b binding protein 6A, chloroplastic OS=Solanum lycopersicum GN=CAB6A PE=2 SV=1) HSP 1 Score: 126.331 bits (316), Expect = 2.051e-28 Identity = 76/204 (37.25%), Postives = 105/204 (51.47%), Query Frame = 1 Query: 220 WFPGATPPEWLDGTMVGDRGFDPLGLGKPTEYLQYDFDSLDQNLAKNDVGELLGVITDSGELQPTPLQPYTEVFGLQRFRECELIHGRWAMLGTLGAIAVEALTGVAWQDAGKVELVEG--SSYLGQPLPF-SLTTLIWIEVIVIGYIEYQRNAELDPVKRLYPGGYFDPLGLASDPGKLENLQLAEIKHARLAMVAFLIFGIQ 822 W PG P +LDG+ GD GFD LGLG+ L+R++E ELIH RWAML G I EAL W A + + G ++YLGQP+P+ +L T++ IE + I ++E+QR+ E D K+ YPGG FDPLG + DP K E L++ EIK+ RLA++A + F +Q Sbjct: 49 WMPGQPRPSYLDGSAPGDFGFDSLGLGEVPA-------------------------------------------NLERYKESELIHCRWAMLAVPGIIVPEALGLGNWVKAQEWAAIPGGQATYLGQPVPWGTLPTILAIEFLAIAFVEHQRSMEKDSEKKKYPGGAFDPLGYSKDPAKFEELKVKEIKNGRLALLAIVGFCVQ 209
BLAST of CK934401 vs. ExPASy Swiss-Prot
Match: CB121_HORVU (Chlorophyll a-b binding protein 1B-21, chloroplastic OS=Hordeum vulgare GN=LHC Ib-21 PE=1 SV=1) HSP 1 Score: 125.561 bits (314), Expect = 3.499e-28 Identity = 79/204 (38.73%), Postives = 102/204 (50.00%), Query Frame = 1 Query: 220 WFPGATPPEWLDGTMVGDRGFDPLGLGKPTEYLQYDFDSLDQNLAKNDVGELLGVITDSGELQPTPLQPYTEVFGLQRFRECELIHGRWAMLGTLGAIAVEALTGVAWQDAGK-VELVEG-SSYLGQPLPF-SLTTLIWIEVIVIGYIEYQRNAELDPVKRLYPGGYFDPLGLASDPGKLENLQLAEIKHARLAMVAFLIFGIQ 822 WFPG P LDG+ GD GFDPLGL E +RF+E E+ H RWAML G + EAL W A + L +G ++YLG P+P+ +L T++ IE + I + E QR E DP K+ YPGG FDPLG + DP K E L+L EIK+ RLAM+AF+ F +Q Sbjct: 48 WFPGQPRPAHLDGSSPGDFGFDPLGLATVPE-------------------------------------------NFERFKESEIYHCRWAMLCVPGVLVPEALGLGNWVKAQEWAALPDGQATYLGNPVPWGNLPTILAIEFLAIAFAEQQRTMEKDPEKKKYPGGAFDPLGFSKDPAKFEELKLKEIKNGRLAMLAFVGFCVQ 208
BLAST of CK934401 vs. ExPASy Swiss-Prot
Match: CB4_SPIOL (Chlorophyll a-b binding protein CP24, chloroplastic OS=Spinacia oleracea PE=2 SV=1) HSP 1 Score: 112.079 bits (279), Expect = 4.003e-24 Identity = 80/228 (35.09%), Postives = 105/228 (46.05%), Query Frame = 1 Query: 241 PEWLDGTMVGDRGFDPLGLGKPTEYLQYDFDSLDQNLAKNDVGELLGVITDSGELQPTPLQPYTEVFGLQRFRECELIHGRWAMLGTLGAIAVEALTGVAWQDAGKVELVEGSSYLGQPLPFSLTTLIWIEVIVIGYIEYQRNAE-LDPVKRL----------------------YPGG-YFDPLGLAS---------DPGKLENLQLAEIKHARLAMVAFLIFGIQA 825 PEWLDG++ GD GFDPLGLGK +L++ +RE ELIHGRWAML LG +A TG+ W +AG + G PFS TL+ +++++G++E +R + DP + YPGG +FDPL LA D KLE L+LAEIKHARLAM+A LIF +A Sbjct: 73 PEWLDGSLPGDFGFDPLGLGKDPAFLKW-------------------------------------------YREAELIHGRWAMLAVLGIFVGQAWTGIPWFEAG--------ADPGAVAPFSFGTLLGTQLLLMGWVESKRWVDFFDPDSQSVEWATPWSRTAENFSNSTGEQGYPGGKFFDPLSLAGTISNGVYNPDTDKLERLKLAEIKHARLAMLAMLIFYFEA 249
BLAST of CK934401 vs. ExPASy Swiss-Prot
Match: CB12_PETHY (Chlorophyll a-b binding protein, chloroplastic OS=Petunia hybrida PE=2 SV=1) HSP 1 Score: 108.612 bits (270), Expect = 4.426e-23 Identity = 78/227 (34.36%), Postives = 107/227 (47.14%), Query Frame = 1 Query: 202 DSDRLVWFPGATPPEWLDGTMVGDRGFDPLGLGKPTEYLQYDFDSLDQNLAKNDVGELLGVITDSGELQPTPLQPYTEVFGLQRFRECELIHGRWAMLGTLGAIAVEALTGV------AWQDAGKVELVEGSSYLGQPLPFSLTTLIWIEVIVIGYIEYQRNAEL--------DPV---KRL------YPGG-YFDPLGLAS-DPGKLENLQLAEIKHARLAMVAFL 807 D DR +WFPG+TPPEWLDG++ GD GFDPLGLG E L+++ + EL+H RWAMLG G E LT + +W AG+ E + TTL IE+++IG+ E +R A++ DP+ +L YPGG +FDPLG S P K++ L+ EIK+ RLAM+A + Sbjct: 62 DPDRPLWFPGSTPPEWLDGSLPGDFGFDPLGLGSDPESLKWN-------------------------------------------AQAELVHSRWAMLGAAGIFIPEFLTKIGVLNTPSWYTAGEQEYFTDT-----------TTLFVIELVLIGWAEGRRWADIIKPGCVNTDPIFPNNKLTGTDVGYPGGLWFDPLGWGSGSPAKIKELRTKEIKNGRLAMLAVM 234
BLAST of CK934401 vs. ExPASy Swiss-Prot
Match: CB4A_SOLLC (Chlorophyll a-b binding protein CP24 10A, chloroplastic OS=Solanum lycopersicum GN=CAP10A PE=3 SV=1) HSP 1 Score: 107.842 bits (268), Expect = 7.549e-23 Identity = 78/228 (34.21%), Postives = 104/228 (45.61%), Query Frame = 1 Query: 241 PEWLDGTMVGDRGFDPLGLGKPTEYLQYDFDSLDQNLAKNDVGELLGVITDSGELQPTPLQPYTEVFGLQRFRECELIHGRWAMLGTLGAIAVEALTGVAWQDAGKVELVEGSSYLGQPLPFSLTTLIWIEVIVIGYIEYQRNAE-LDPVKRL----------------------YPGG-YFDPLGLAS---------DPGKLENLQLAEIKHARLAMVAFLIFGIQA 825 PEWLDG++ GD GFDPLGLGK +L++ +RE ELIHGRWAM LG +A +G+ W +AG + G PFS TL+ ++I++G++E +R + DP + YPGG +FDPL LA D KLE L++AEIKHARLAM+A LIF +A Sbjct: 68 PEWLDGSLPGDYGFDPLGLGKDPAFLKW-------------------------------------------YREAELIHGRWAMAAVLGIFVGQAWSGIPWFEAG--------ADPGAIAPFSFGTLLGTQLILMGWVESKRWVDFFDPDSQSVEWATPWSKTAENFANFTGEQGYPGGKFFDPLALAGTLNNGVYVPDTEKLERLKVAEIKHARLAMLAMLIFYFEA 244
BLAST of CK934401 vs. ExPASy Swiss-Prot
Match: CB12_SOLLC (Chlorophyll a-b binding protein 7, chloroplastic OS=Solanum lycopersicum GN=CAB7 PE=3 SV=1) HSP 1 Score: 103.605 bits (257), Expect = 1.424e-21 Identity = 75/227 (33.04%), Postives = 106/227 (46.70%), Query Frame = 1 Query: 202 DSDRLVWFPGATPPEWLDGTMVGDRGFDPLGLGKPTEYLQYDFDSLDQNLAKNDVGELLGVITDSGELQPTPLQPYTEVFGLQRFRECELIHGRWAMLGTLGAIAVEALTGV------AWQDAGKVELVEGSSYLGQPLPFSLTTLIWIEVIVIGYIEYQRNAEL--------DPV---KRL------YPGG-YFDPLGLAS-DPGKLENLQLAEIKHARLAMVAFL 807 D DR +WFPG+TPP WLDG++ GD GFDPLGL E L+++ ++ EL+H RWAMLG G E LT + +W AG+ E + TTL +E+++IG+ E +R A++ DP+ +L YPGG +FDPLG S P K++ L+ EIK+ RLAM+A + Sbjct: 62 DPDRPLWFPGSTPPPWLDGSLPGDFGFDPLGLASDPESLRWN-------------------------------------------QQAELVHCRWAMLGAAGIFIPELLTKIGILNTPSWYTAGEQEYFTDT-----------TTLFIVELVLIGWAEGRRWADIIKPGCVNTDPIFPNNKLTGTDVGYPGGLWFDPLGWGSGSPAKIKELRTKEIKNGRLAMLAVM 234 The following BLAST results are available for this feature:
BLAST of CK934401 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 67
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Sequences
The
following sequences are available for this feature:
EST sequence >CK934401 ID=CK934401; Name=CK934401; organism=Citrus sinensis; type=EST; length=832bpback to top |