CK934401

Overview
NameCK934401
Unique NameCK934401
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length832
Libraries
Library NameType
Developing fruit peel at 38 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CK934401 vs. ExPASy Swiss-Prot
Match: CB23_HORVU (Chlorophyll a-b binding protein of LHCII type III, chloroplastic OS=Hordeum vulgare GN=LHBC PE=2 SV=1)

HSP 1 Score: 85.5001 bits (210), Expect = 4.012e-16
Identity = 61/141 (43.26%), Postives = 76/141 (53.90%), Query Frame = 1
Query:  451 RFRECELIHGRWAMLGTLGAIAVEAL---TGV-----AWQDAGKVELVEGS-SYLGQPLPF---SLTTLIWIEVIVIGYIEYQRNAELDPVKR---LYPGG-YFDPLGLASDPGKLENLQLAEIKHARLAMVAFLIFGIQA 825
            R R  E+IHGRWAMLG LG +  E L    GV      W  AG     EG   YLG P      S+  ++  +V+++G +E  R   LD V     LYPGG YFDPLGLA DP     L++ EIK+ RLAM +   F +QA
Sbjct:   94 RNRALEVIHGRWAMLGALGCVFPEVLQKWVGVEFKEPVWFKAGSQIFSEGGLDYLGNPNLVHAQSILAVLGFQVLLMGLVEGFRINGLDGVGEGNDLYPGGQYFDPLGLADDPVTFAELKVKEIKNGRLAMFSMFGFFVQA 234          
BLAST of CK934401 vs. ExPASy Swiss-Prot
Match: CB21_MAIZE (Chlorophyll a-b binding protein 1, chloroplastic OS=Zea mays GN=CAB1 PE=3 SV=1)

HSP 1 Score: 85.5001 bits (210), Expect = 4.012e-16
Identity = 71/210 (33.81%), Postives = 91/210 (43.33%), Query Frame = 1
Query:  238 PPEWLDGTMVGDRGFDPLGLGKPTEYLQYDFDSLDQNLAKNDVGELLGVITDSGELQPTPLQPYTEVFGLQRFRECELIHGRWAMLGTLGAIAVEALT--GV-----AWQDAGKVELVEGS-SYLGQPLPFSLTTLIWI---EVIVIGYIEYQRNAEL---DPVKRLYPGGYFDPLGLASDPGKLENLQLAEIKHARLAMVAFLIFGIQA 825
            PP +L G   GD G+D  GL    E             AKN                                RE E+IH RWAMLG LG +  E L+  GV      W  AG     EG   YLG P      +++ I   +V+++G +E  R A     + V  LYPGG FDPLGLA DP     L++ E+K+ RLAM +   F +QA
Sbjct:   62 PPSYLTGEFPGDYGWDTAGLSADPE-----------TFAKN--------------------------------RELEVIHSRWAMLGALGCVFPELLSRNGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLIHAQSILAIWACQVVLMGAVEGYRIAGGPLGEVVDPLYPGGSFDPLGLADDPEAFAELKVKELKNGRLAMFSMFGFFVQA 228          
BLAST of CK934401 vs. ExPASy Swiss-Prot
Match: CB23_ORYSJ (Chlorophyll a-b binding protein, chloroplastic OS=Oryza sativa subsp. japonica GN=RCABP89 PE=2 SV=1)

HSP 1 Score: 85.1149 bits (209), Expect = 5.240e-16
Identity = 56/139 (40.29%), Postives = 78/139 (56.12%), Query Frame = 1
Query:  451 RFRECELIHGRWAMLGTLGAIAVEALT--GV-----AWQDAGKVELVEGS-SYLGQPLPFSLTTL--IW-IEVIVIGYIEYQR---NAELDPVKRLYPGGYFDPLGLASDPGKLENLQLAEIKHARLAMVAFLIFGIQA 825
            R RE E+IH RWAMLG LG +  E L+  GV      W  AG     EG   YLG P      ++  IW ++V+++G++E  R       + + ++YPGG FDPLGLA DP     L++ E+K+ RLAM +   F +QA
Sbjct:   91 RNRELEVIHSRWAMLGALGCVFPEILSKNGVKFGEAVWFKAGAQIFSEGGLDYLGNPNLVHAQSILAIWAVQVVLMGFVEGYRVGGGPLGEGLDKVYPGGAFDPLGLADDPDTFAELKVKELKNGRLAMFSMFGFFVQA 229          
BLAST of CK934401 vs. ExPASy Swiss-Prot
Match: CB23_ORYSI (Chlorophyll a-b binding protein, chloroplastic OS=Oryza sativa subsp. indica GN=OsI_012078 PE=2 SV=1)

HSP 1 Score: 85.1149 bits (209), Expect = 5.240e-16
Identity = 56/139 (40.29%), Postives = 78/139 (56.12%), Query Frame = 1
Query:  451 RFRECELIHGRWAMLGTLGAIAVEALT--GV-----AWQDAGKVELVEGS-SYLGQPLPFSLTTL--IW-IEVIVIGYIEYQR---NAELDPVKRLYPGGYFDPLGLASDPGKLENLQLAEIKHARLAMVAFLIFGIQA 825
            R RE E+IH RWAMLG LG +  E L+  GV      W  AG     EG   YLG P      ++  IW ++V+++G++E  R       + + ++YPGG FDPLGLA DP     L++ E+K+ RLAM +   F +QA
Sbjct:   91 RNRELEVIHSRWAMLGALGCVFPEILSKNGVKFGEAVWFKAGAQIFSEGGLDYLGNPNLVHAQSILAIWAVQVVLMGFVEGYRVGGGPLGEGLDKVYPGGAFDPLGLADDPDTFAELKVKELKNGRLAMFSMFGFFVQA 229          
BLAST of CK934401 vs. ExPASy Swiss-Prot
Match: CB21_GOSHI (Chlorophyll a-b binding protein 151, chloroplastic OS=Gossypium hirsutum GN=CAB-151 PE=2 SV=2)

HSP 1 Score: 85.1149 bits (209), Expect = 5.240e-16
Identity = 58/140 (41.43%), Postives = 76/140 (54.29%), Query Frame = 1
Query:  457 RECELIHGRWAMLGTLGAIAVEALT--GV-----AWQDAGKVELVEGS-SYLGQPLPFSLTTLIWI---EVIVIGYIEYQR------NAELDPVKRLYPGGYFDPLGLASDPGKLENLQLAEIKHARLAMVAFLIFGIQA 825
            RE E+IH RWAMLG LG +  E L+  GV      W  AG     EG   YLG P      +++ I   +V+++G++E  R         LDP+   YPGG FDPLGLA DP     L++ EIK+ RLAM +   F +QA
Sbjct:   95 RELEVIHCRWAMLGALGCVFPEILSKNGVKFGEAVWFKAGSQIFSEGGLDYLGNPNLIHAQSILAIWACQVVLMGFVEGYRVGGGPLGEGLDPI---YPGGAFDPLGLADDPDAFAELKVKEIKNGRLAMFSMFGFFVQA 231          
BLAST of CK934401 vs. ExPASy Swiss-Prot
Match: CB2A_PYRPY (Chlorophyll a-b binding protein 1A, chloroplastic OS=Pyrus pyrifolia PE=2 SV=1)

HSP 1 Score: 84.7297 bits (208), Expect = 6.844e-16
Identity = 73/213 (34.27%), Postives = 91/213 (42.72%), Query Frame = 1
Query:  238 PPEWLDGTMVGDRGFDPLGLGKPTEYLQYDFDSLDQNLAKNDVGELLGVITDSGELQPTPLQPYTEVFGLQRFRECELIHGRWAMLGTLGAIAVEALT--GV-----AWQDAGKVELVEGS-SYLGQPLPFSLTTLIWI---EVIVIGYIEYQRNAE------LDPVKRLYPGGYFDPLGLASDPGKLENLQLAEIKHARLAMVAFLIFGIQA 825
            PP +L G   GD G+D  GL    E             AKN                                RE E+IH RWAMLG LG +  E L   GV      W  AG     EG   YLG P      +++ I   +VI++G IE  R A        DP+   YPGG FDPLGLA DP    ++++ EIK+ RLAM +   F +QA
Sbjct:   78 PPSYLTGEFPGDYGWDTAGLSADPE-----------TFAKN--------------------------------RELEVIHSRWAMLGALGCVFPELLARNGVKFGEAVWFKAGAQIFSEGGLDYLGSPQLIHAQSILAIWACQVILMGAIEGYRVAGGPLGEVTDPI---YPGGNFDPLGLADDPDAFADVKVKEIKNGRLAMFSMFGFFVQA 244          
BLAST of CK934401 vs. ExPASy Swiss-Prot
Match: CB29_MAIZE (Chlorophyll a-b binding protein M9, chloroplastic OS=Zea mays GN=CAB-M9 PE=2 SV=1)

HSP 1 Score: 84.7297 bits (208), Expect = 6.844e-16
Identity = 71/210 (33.81%), Postives = 91/210 (43.33%), Query Frame = 1
Query:  238 PPEWLDGTMVGDRGFDPLGLGKPTEYLQYDFDSLDQNLAKNDVGELLGVITDSGELQPTPLQPYTEVFGLQRFRECELIHGRWAMLGTLGAIAVEALT--GV-----AWQDAGKVELVEGS-SYLGQPLPFSLTTLIWI---EVIVIGYIEYQRNAEL---DPVKRLYPGGYFDPLGLASDPGKLENLQLAEIKHARLAMVAFLIFGIQA 825
            PP +L G   GD G+D  GL    E             AKN                                RE E+IH RWAMLG LG +  E L   GV      W  AG     EG   YLG P      +++ I   +V+++G IE  R A     + V  LYPGG FDPLGLA DP    ++++ E+K+ RLAM +   F +QA
Sbjct:   65 PPSYLTGEFPGDYGWDTAGLSADPE-----------TFAKN--------------------------------RELEVIHSRWAMLGALGCVFPELLARNGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLIHAQSILAIWACQVVLMGAIEGYRVAGGPLGEVVDPLYPGGTFDPLGLADDPEAFADVKVKELKNGRLAMFSMFGFFVQA 231          
BLAST of CK934401 vs. ExPASy Swiss-Prot
Match: CB23_SOYBN (Chlorophyll a-b binding protein 3, chloroplastic OS=Glycine max GN=CAB3 PE=3 SV=1)

HSP 1 Score: 84.7297 bits (208), Expect = 6.844e-16
Identity = 72/213 (33.80%), Postives = 91/213 (42.72%), Query Frame = 1
Query:  238 PPEWLDGTMVGDRGFDPLGLGKPTEYLQYDFDSLDQNLAKNDVGELLGVITDSGELQPTPLQPYTEVFGLQRFRECELIHGRWAMLGTLGAIAVEALT--GV-----AWQDAGKVELVEGS-SYLGQPLPFSLTTLIWI---EVIVIGYIEYQRNAE------LDPVKRLYPGGYFDPLGLASDPGKLENLQLAEIKHARLAMVAFLIFGIQA 825
            PP +L G   GD G+D  GL    E             AKN                                RE E+IH RWAMLG LG +  E L+  GV      W  AG     EG   YLG P      +++ I   +VI++G +E  R A        DP+   YPGG FDPLGLA DP     L++ E+K+ RLAM +   F +QA
Sbjct:   63 PPSYLTGEFPGDYGWDTAGLSADPE-----------TFAKN--------------------------------RELEVIHSRWAMLGALGCVFPELLSRNGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLIHAQSILAIWATQVILMGAVEGYRIAGGPLGEVTDPI---YPGGSFDPLGLADDPEAFAELKVKELKNGRLAMFSMFGFFVQA 229          
BLAST of CK934401 vs. ExPASy Swiss-Prot
Match: CB22_ARATH (Chlorophyll a-b binding protein 2, chloroplastic OS=Arabidopsis thaliana GN=CAB2A PE=1 SV=1)

HSP 1 Score: 84.7297 bits (208), Expect = 6.844e-16
Identity = 58/140 (41.43%), Postives = 76/140 (54.29%), Query Frame = 1
Query:  451 RFRECELIHGRWAMLGTLGAIAVEALT--GV-----AWQDAGKVELVEGS-SYLGQPLPFSLTTLIWI---EVIVIGYIEYQRNAELDPVKR----LYPGGYFDPLGLASDPGKLENLQLAEIKHARLAMVAFLIFGIQA 825
            R RE E+IH RWAMLG LG +  E L   GV      W  AG     +G   YLG P      +++ I   +VI++G +E  R A   P+      LYPGG FDPLGLA+DP     L++ E+K+ RLAM +   F +QA
Sbjct:   94 RNRELEVIHSRWAMLGALGCVFPELLARNGVKFGEAVWFKAGSQIFSDGGLDYLGNPSLVHAQSILAIWATQVILMGAVEGYRVAGNGPLGEAEDLLYPGGSFDPLGLATDPEAFAELKVKELKNGRLAMFSMFGFFVQA 233          
BLAST of CK934401 vs. ExPASy Swiss-Prot
Match: CB21_LEMGI (Chlorophyll a-b binding protein of LHCII type I, chloroplastic OS=Lemna gibba PE=3 SV=1)

HSP 1 Score: 84.7297 bits (208), Expect = 6.844e-16
Identity = 61/140 (43.57%), Postives = 75/140 (53.57%), Query Frame = 1
Query:  457 RECELIHGRWAMLGTLGAIAVEALT--GV-----AWQDAGKVELVEGS-SYLGQPLPFSLTTLIWI---EVIVIGYIEYQR------NAELDPVKRLYPGGYFDPLGLASDPGKLENLQLAEIKHARLAMVAFLIFGIQA 825
            RE E+IH RWAMLG LG I  E L+  GV      W  AG     EG   YLG P      +++ I   +V+++G IE  R         LDP   LYPGG FDPLGLA DP     L++ EIK+ RLAM +   F +QA
Sbjct:   94 RELEVIHSRWAMLGALGCIFPELLSKNGVQFGEAVWFKAGAQIFSEGGLDYLGNPNLVHAQSILAIWATQVVLMGLIEGYRVGGGPLGEGLDP---LYPGGAFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQA 230          
The following BLAST results are available for this feature:
BLAST of CK934401 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 67
Match NameE-valueIdentityDescription
CB23_HORVU4.012e-1643.26Chlorophyll a-b binding protein of LHCII type III,... [more]
CB21_MAIZE4.012e-1633.81Chlorophyll a-b binding protein 1, chloroplastic O... [more]
CB23_ORYSJ5.240e-1640.29Chlorophyll a-b binding protein, chloroplastic OS=... [more]
CB23_ORYSI5.240e-1640.29Chlorophyll a-b binding protein, chloroplastic OS=... [more]
CB21_GOSHI5.240e-1641.43Chlorophyll a-b binding protein 151, chloroplastic... [more]
CB2A_PYRPY6.844e-1634.27Chlorophyll a-b binding protein 1A, chloroplastic ... [more]
CB29_MAIZE6.844e-1633.81Chlorophyll a-b binding protein M9, chloroplastic ... [more]
CB23_SOYBN6.844e-1633.80Chlorophyll a-b binding protein 3, chloroplastic O... [more]
CB22_ARATH6.844e-1641.43Chlorophyll a-b binding protein 2, chloroplastic O... [more]
CB21_LEMGI6.844e-1643.57Chlorophyll a-b binding protein of LHCII type I, c... [more]

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Properties
Property NameValue
Genbank descriptionCGF1004259_E12 Developing fruit peel at 38 DAFB Citrus sinensis cDNA clone P38DAB10004_IIF_E12 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK934401 ID=CK934401; Name=CK934401; organism=Citrus sinensis; type=EST; length=832bp
GCGGGAGTACACTGGAAGTCACATATTCTATCCNNNATCNNNTTATCAGC
GATGGCCACCACCACTACAGCAGCAGCATCACATTTCTTCGGGACGAGAA
TTCATGGGGCTGTCGTGAAACAAAGATCGGGAAAATTCCAAGCCAGGTTC
AGCTTTCGCAAGAAAAAATCCCCACCAGCCAAAAAGGCCAGGCCTACACG
AGACTCCGACCGGCTTGTCTGGTTCCCCGGCGCCACCCCGCCGGAATGGC
TCGACGGGACAATGGTGGGTGACCGTGGGTTCGACCCGTTGGGGCTGGGG
AAGCCAACAGAGTACTTGCAGTATGATTTTGACTCGTTGGATCAGAACTT
GGCCAAGAACGATGTCGGCGAGCTTCTCGGAGTGATTACTGATTCCGGGG
AGCTGCAGCCGACGCCGCTGCAGCCGTACACGGAGGTATTTGGGCTGCAG
AGGTTTAGAGAATGTGAGCTGATTCATGGAAGGTGGGCCATGTTGGGTAC
CCTTGGCGCCATTGCTGTTGAAGCTCTCACTGGTGTCGCATGGCAGGATG
CTGGAAAGGTGGAGCTGGTGGAGGGTTCATCTTATCTTGGCCAACCACTT
CCATTTTCATTAACAACATTGATTTGGATTGAAGTTATTGTGATTGGGTA
CATAGAATATCAAAGAAATGCAGAGCTTGATCCAGTGAAAAGACTATACC
CTGGTGGGTATTTTGATCCTCTTGGCTTGGCCTCAGATCCTGGGAAGCTT
GAAAATCTTCAATTGGCTGAAATCAAGCACGCTCGTCTAGCAATGGTAGC
ATTTTTAATCTTTGGAATCCAGGCTGCTTTTA
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