CK934401
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CK934401 vs. ExPASy Swiss-Prot
Match: CB23_HORVU (Chlorophyll a-b binding protein of LHCII type III, chloroplastic OS=Hordeum vulgare GN=LHBC PE=2 SV=1) HSP 1 Score: 85.5001 bits (210), Expect = 4.012e-16 Identity = 61/141 (43.26%), Postives = 76/141 (53.90%), Query Frame = 1 Query: 451 RFRECELIHGRWAMLGTLGAIAVEAL---TGV-----AWQDAGKVELVEGS-SYLGQPLPF---SLTTLIWIEVIVIGYIEYQRNAELDPVKR---LYPGG-YFDPLGLASDPGKLENLQLAEIKHARLAMVAFLIFGIQA 825 R R E+IHGRWAMLG LG + E L GV W AG EG YLG P S+ ++ +V+++G +E R LD V LYPGG YFDPLGLA DP L++ EIK+ RLAM + F +QA Sbjct: 94 RNRALEVIHGRWAMLGALGCVFPEVLQKWVGVEFKEPVWFKAGSQIFSEGGLDYLGNPNLVHAQSILAVLGFQVLLMGLVEGFRINGLDGVGEGNDLYPGGQYFDPLGLADDPVTFAELKVKEIKNGRLAMFSMFGFFVQA 234
BLAST of CK934401 vs. ExPASy Swiss-Prot
Match: CB21_MAIZE (Chlorophyll a-b binding protein 1, chloroplastic OS=Zea mays GN=CAB1 PE=3 SV=1) HSP 1 Score: 85.5001 bits (210), Expect = 4.012e-16 Identity = 71/210 (33.81%), Postives = 91/210 (43.33%), Query Frame = 1 Query: 238 PPEWLDGTMVGDRGFDPLGLGKPTEYLQYDFDSLDQNLAKNDVGELLGVITDSGELQPTPLQPYTEVFGLQRFRECELIHGRWAMLGTLGAIAVEALT--GV-----AWQDAGKVELVEGS-SYLGQPLPFSLTTLIWI---EVIVIGYIEYQRNAEL---DPVKRLYPGGYFDPLGLASDPGKLENLQLAEIKHARLAMVAFLIFGIQA 825 PP +L G GD G+D GL E AKN RE E+IH RWAMLG LG + E L+ GV W AG EG YLG P +++ I +V+++G +E R A + V LYPGG FDPLGLA DP L++ E+K+ RLAM + F +QA Sbjct: 62 PPSYLTGEFPGDYGWDTAGLSADPE-----------TFAKN--------------------------------RELEVIHSRWAMLGALGCVFPELLSRNGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLIHAQSILAIWACQVVLMGAVEGYRIAGGPLGEVVDPLYPGGSFDPLGLADDPEAFAELKVKELKNGRLAMFSMFGFFVQA 228
BLAST of CK934401 vs. ExPASy Swiss-Prot
Match: CB23_ORYSJ (Chlorophyll a-b binding protein, chloroplastic OS=Oryza sativa subsp. japonica GN=RCABP89 PE=2 SV=1) HSP 1 Score: 85.1149 bits (209), Expect = 5.240e-16 Identity = 56/139 (40.29%), Postives = 78/139 (56.12%), Query Frame = 1 Query: 451 RFRECELIHGRWAMLGTLGAIAVEALT--GV-----AWQDAGKVELVEGS-SYLGQPLPFSLTTL--IW-IEVIVIGYIEYQR---NAELDPVKRLYPGGYFDPLGLASDPGKLENLQLAEIKHARLAMVAFLIFGIQA 825 R RE E+IH RWAMLG LG + E L+ GV W AG EG YLG P ++ IW ++V+++G++E R + + ++YPGG FDPLGLA DP L++ E+K+ RLAM + F +QA Sbjct: 91 RNRELEVIHSRWAMLGALGCVFPEILSKNGVKFGEAVWFKAGAQIFSEGGLDYLGNPNLVHAQSILAIWAVQVVLMGFVEGYRVGGGPLGEGLDKVYPGGAFDPLGLADDPDTFAELKVKELKNGRLAMFSMFGFFVQA 229
BLAST of CK934401 vs. ExPASy Swiss-Prot
Match: CB23_ORYSI (Chlorophyll a-b binding protein, chloroplastic OS=Oryza sativa subsp. indica GN=OsI_012078 PE=2 SV=1) HSP 1 Score: 85.1149 bits (209), Expect = 5.240e-16 Identity = 56/139 (40.29%), Postives = 78/139 (56.12%), Query Frame = 1 Query: 451 RFRECELIHGRWAMLGTLGAIAVEALT--GV-----AWQDAGKVELVEGS-SYLGQPLPFSLTTL--IW-IEVIVIGYIEYQR---NAELDPVKRLYPGGYFDPLGLASDPGKLENLQLAEIKHARLAMVAFLIFGIQA 825 R RE E+IH RWAMLG LG + E L+ GV W AG EG YLG P ++ IW ++V+++G++E R + + ++YPGG FDPLGLA DP L++ E+K+ RLAM + F +QA Sbjct: 91 RNRELEVIHSRWAMLGALGCVFPEILSKNGVKFGEAVWFKAGAQIFSEGGLDYLGNPNLVHAQSILAIWAVQVVLMGFVEGYRVGGGPLGEGLDKVYPGGAFDPLGLADDPDTFAELKVKELKNGRLAMFSMFGFFVQA 229
BLAST of CK934401 vs. ExPASy Swiss-Prot
Match: CB21_GOSHI (Chlorophyll a-b binding protein 151, chloroplastic OS=Gossypium hirsutum GN=CAB-151 PE=2 SV=2) HSP 1 Score: 85.1149 bits (209), Expect = 5.240e-16 Identity = 58/140 (41.43%), Postives = 76/140 (54.29%), Query Frame = 1 Query: 457 RECELIHGRWAMLGTLGAIAVEALT--GV-----AWQDAGKVELVEGS-SYLGQPLPFSLTTLIWI---EVIVIGYIEYQR------NAELDPVKRLYPGGYFDPLGLASDPGKLENLQLAEIKHARLAMVAFLIFGIQA 825 RE E+IH RWAMLG LG + E L+ GV W AG EG YLG P +++ I +V+++G++E R LDP+ YPGG FDPLGLA DP L++ EIK+ RLAM + F +QA Sbjct: 95 RELEVIHCRWAMLGALGCVFPEILSKNGVKFGEAVWFKAGSQIFSEGGLDYLGNPNLIHAQSILAIWACQVVLMGFVEGYRVGGGPLGEGLDPI---YPGGAFDPLGLADDPDAFAELKVKEIKNGRLAMFSMFGFFVQA 231
BLAST of CK934401 vs. ExPASy Swiss-Prot
Match: CB2A_PYRPY (Chlorophyll a-b binding protein 1A, chloroplastic OS=Pyrus pyrifolia PE=2 SV=1) HSP 1 Score: 84.7297 bits (208), Expect = 6.844e-16 Identity = 73/213 (34.27%), Postives = 91/213 (42.72%), Query Frame = 1 Query: 238 PPEWLDGTMVGDRGFDPLGLGKPTEYLQYDFDSLDQNLAKNDVGELLGVITDSGELQPTPLQPYTEVFGLQRFRECELIHGRWAMLGTLGAIAVEALT--GV-----AWQDAGKVELVEGS-SYLGQPLPFSLTTLIWI---EVIVIGYIEYQRNAE------LDPVKRLYPGGYFDPLGLASDPGKLENLQLAEIKHARLAMVAFLIFGIQA 825 PP +L G GD G+D GL E AKN RE E+IH RWAMLG LG + E L GV W AG EG YLG P +++ I +VI++G IE R A DP+ YPGG FDPLGLA DP ++++ EIK+ RLAM + F +QA Sbjct: 78 PPSYLTGEFPGDYGWDTAGLSADPE-----------TFAKN--------------------------------RELEVIHSRWAMLGALGCVFPELLARNGVKFGEAVWFKAGAQIFSEGGLDYLGSPQLIHAQSILAIWACQVILMGAIEGYRVAGGPLGEVTDPI---YPGGNFDPLGLADDPDAFADVKVKEIKNGRLAMFSMFGFFVQA 244
BLAST of CK934401 vs. ExPASy Swiss-Prot
Match: CB29_MAIZE (Chlorophyll a-b binding protein M9, chloroplastic OS=Zea mays GN=CAB-M9 PE=2 SV=1) HSP 1 Score: 84.7297 bits (208), Expect = 6.844e-16 Identity = 71/210 (33.81%), Postives = 91/210 (43.33%), Query Frame = 1 Query: 238 PPEWLDGTMVGDRGFDPLGLGKPTEYLQYDFDSLDQNLAKNDVGELLGVITDSGELQPTPLQPYTEVFGLQRFRECELIHGRWAMLGTLGAIAVEALT--GV-----AWQDAGKVELVEGS-SYLGQPLPFSLTTLIWI---EVIVIGYIEYQRNAEL---DPVKRLYPGGYFDPLGLASDPGKLENLQLAEIKHARLAMVAFLIFGIQA 825 PP +L G GD G+D GL E AKN RE E+IH RWAMLG LG + E L GV W AG EG YLG P +++ I +V+++G IE R A + V LYPGG FDPLGLA DP ++++ E+K+ RLAM + F +QA Sbjct: 65 PPSYLTGEFPGDYGWDTAGLSADPE-----------TFAKN--------------------------------RELEVIHSRWAMLGALGCVFPELLARNGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLIHAQSILAIWACQVVLMGAIEGYRVAGGPLGEVVDPLYPGGTFDPLGLADDPEAFADVKVKELKNGRLAMFSMFGFFVQA 231
BLAST of CK934401 vs. ExPASy Swiss-Prot
Match: CB23_SOYBN (Chlorophyll a-b binding protein 3, chloroplastic OS=Glycine max GN=CAB3 PE=3 SV=1) HSP 1 Score: 84.7297 bits (208), Expect = 6.844e-16 Identity = 72/213 (33.80%), Postives = 91/213 (42.72%), Query Frame = 1 Query: 238 PPEWLDGTMVGDRGFDPLGLGKPTEYLQYDFDSLDQNLAKNDVGELLGVITDSGELQPTPLQPYTEVFGLQRFRECELIHGRWAMLGTLGAIAVEALT--GV-----AWQDAGKVELVEGS-SYLGQPLPFSLTTLIWI---EVIVIGYIEYQRNAE------LDPVKRLYPGGYFDPLGLASDPGKLENLQLAEIKHARLAMVAFLIFGIQA 825 PP +L G GD G+D GL E AKN RE E+IH RWAMLG LG + E L+ GV W AG EG YLG P +++ I +VI++G +E R A DP+ YPGG FDPLGLA DP L++ E+K+ RLAM + F +QA Sbjct: 63 PPSYLTGEFPGDYGWDTAGLSADPE-----------TFAKN--------------------------------RELEVIHSRWAMLGALGCVFPELLSRNGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLIHAQSILAIWATQVILMGAVEGYRIAGGPLGEVTDPI---YPGGSFDPLGLADDPEAFAELKVKELKNGRLAMFSMFGFFVQA 229
BLAST of CK934401 vs. ExPASy Swiss-Prot
Match: CB22_ARATH (Chlorophyll a-b binding protein 2, chloroplastic OS=Arabidopsis thaliana GN=CAB2A PE=1 SV=1) HSP 1 Score: 84.7297 bits (208), Expect = 6.844e-16 Identity = 58/140 (41.43%), Postives = 76/140 (54.29%), Query Frame = 1 Query: 451 RFRECELIHGRWAMLGTLGAIAVEALT--GV-----AWQDAGKVELVEGS-SYLGQPLPFSLTTLIWI---EVIVIGYIEYQRNAELDPVKR----LYPGGYFDPLGLASDPGKLENLQLAEIKHARLAMVAFLIFGIQA 825 R RE E+IH RWAMLG LG + E L GV W AG +G YLG P +++ I +VI++G +E R A P+ LYPGG FDPLGLA+DP L++ E+K+ RLAM + F +QA Sbjct: 94 RNRELEVIHSRWAMLGALGCVFPELLARNGVKFGEAVWFKAGSQIFSDGGLDYLGNPSLVHAQSILAIWATQVILMGAVEGYRVAGNGPLGEAEDLLYPGGSFDPLGLATDPEAFAELKVKELKNGRLAMFSMFGFFVQA 233
BLAST of CK934401 vs. ExPASy Swiss-Prot
Match: CB21_LEMGI (Chlorophyll a-b binding protein of LHCII type I, chloroplastic OS=Lemna gibba PE=3 SV=1) HSP 1 Score: 84.7297 bits (208), Expect = 6.844e-16 Identity = 61/140 (43.57%), Postives = 75/140 (53.57%), Query Frame = 1 Query: 457 RECELIHGRWAMLGTLGAIAVEALT--GV-----AWQDAGKVELVEGS-SYLGQPLPFSLTTLIWI---EVIVIGYIEYQR------NAELDPVKRLYPGGYFDPLGLASDPGKLENLQLAEIKHARLAMVAFLIFGIQA 825 RE E+IH RWAMLG LG I E L+ GV W AG EG YLG P +++ I +V+++G IE R LDP LYPGG FDPLGLA DP L++ EIK+ RLAM + F +QA Sbjct: 94 RELEVIHSRWAMLGALGCIFPELLSKNGVQFGEAVWFKAGAQIFSEGGLDYLGNPNLVHAQSILAIWATQVVLMGLIEGYRVGGGPLGEGLDP---LYPGGAFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQA 230 The following BLAST results are available for this feature:
BLAST of CK934401 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 67
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Sequences
The
following sequences are available for this feature:
EST sequence >CK934401 ID=CK934401; Name=CK934401; organism=Citrus sinensis; type=EST; length=832bpback to top |