CK934401

Overview
NameCK934401
Unique NameCK934401
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length832
Libraries
Library NameType
Developing fruit peel at 38 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig12618 contig Csv1_Contig12618:72..903. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CK934401 vs. ExPASy Swiss-Prot
Match: CB21_ARATH (Chlorophyll a-b binding protein 165/180, chloroplastic OS=Arabidopsis thaliana GN=LHCP-A PE=1 SV=1)

HSP 1 Score: 84.7297 bits (208), Expect = 6.844e-16
Identity = 58/140 (41.43%), Postives = 76/140 (54.29%), Query Frame = 1
Query:  451 RFRECELIHGRWAMLGTLGAIAVEALT--GV-----AWQDAGKVELVEGS-SYLGQPLPFSLTTLIWI---EVIVIGYIEYQRNAELDPVKR----LYPGGYFDPLGLASDPGKLENLQLAEIKHARLAMVAFLIFGIQA 825
            R RE E+IH RWAMLG LG +  E L   GV      W  AG     +G   YLG P      +++ I   +VI++G +E  R A   P+      LYPGG FDPLGLA+DP     L++ E+K+ RLAM +   F +QA
Sbjct:   94 RNRELEVIHSRWAMLGALGCVFPELLARNGVKFGEAVWFKAGSQIFSDGGLDYLGNPSLVHAQSILAIWATQVILMGAVEGYRVAGNGPLGEAEDLLYPGGSFDPLGLATDPEAFAELKVKELKNGRLAMFSMFGFFVQA 233          
BLAST of CK934401 vs. ExPASy Swiss-Prot
Match: CB2_PHYPA (Chlorophyll a-b binding protein, chloroplastic OS=Physcomitrella patens PE=3 SV=1)

HSP 1 Score: 84.3445 bits (207), Expect = 8.938e-16
Identity = 73/218 (33.49%), Postives = 94/218 (43.12%), Query Frame = 1
Query:  223 FPGATPPEWLDGTMVGDRGFDPLGLGKPTEYLQYDFDSLDQNLAKNDVGELLGVITDSGELQPTPLQPYTEVFGLQRFRECELIHGRWAMLGTLGAIAVEAL--TGV-----AWQDAGKVELVEGS-SYLGQPLPFSLTTLIWI---EVIVIGYIEYQRNAE------LDPVKRLYPGGYFDPLGLASDPGKLENLQLAEIKHARLAMVAFLIFGIQA 825
            F G TP  +L+G   GD G+D  GL    E             A+N                                RE E+IH RWAMLG LG +  E L  +GV      W  AG     EG   YLG P      +++ I   +V+++G +E  R A        DP+   YPGG FDPLGLA DP     L++ EIK+ RLAM +   F +QA
Sbjct:   64 FSGETP-SYLNGEFAGDYGWDTAGLSSDPE-----------TFARN--------------------------------RELEVIHARWAMLGALGCLTPELLAKSGVKFGEAVWFKAGAQIFSEGGLDYLGNPSLVHAQSILAIWACQVVLMGAVEGYRVAGGPLGEVTDPI---YPGGSFDPLGLADDPDTFAELKVKEIKNGRLAMFSMFGFFVQA 234          
BLAST of CK934401 vs. ExPASy Swiss-Prot
Match: CB2_CHLMO (Chlorophyll a-b binding protein of LHCII type I, chloroplastic OS=Chlamydomonas moewusii PE=2 SV=1)

HSP 1 Score: 83.9593 bits (206), Expect = 1.167e-15
Identity = 56/144 (38.89%), Postives = 76/144 (52.78%), Query Frame = 1
Query:  448 QRFRECELIHGRWAMLGTLGAIAVEALTGVA--------WQDAGKVELVEGS-SYLGQPLPF---SLTTLIWIEVIVIGYIEYQR------NAELDPVKRLYPGGYFDPLGLASDPGKLENLQLAEIKHARLAMVAFLIFGIQA 825
            +++RE E+IH RWA+LG LG +  E L+  A        W  AG     EG   YLG P      ++   + ++V+++G IE  R         LDP   LYPG  FDPLGLA DP     L++ EIK+ RLAM +   F +QA
Sbjct:   82 KKYRELEVIHARWALLGALGILTPELLSTYAGVKFGEPVWFKAGAQIFSEGGLDYLGSPALIHAQNIVATLAVQVVLMGLIEGYRVNGGPAGEGLDP---LYPGESFDPLGLADDPDTFAELKVKEIKNGRLAMFSCFGFFVQA 222          
BLAST of CK934401 vs. ExPASy Swiss-Prot
Match: CB26_PETSP (Chlorophyll a-b binding protein 37, chloroplastic OS=Petunia sp. GN=CAB37 PE=3 SV=1)

HSP 1 Score: 83.9593 bits (206), Expect = 1.167e-15
Identity = 56/139 (40.29%), Postives = 77/139 (55.40%), Query Frame = 1
Query:  451 RFRECELIHGRWAMLGTLGAIAVEALT--GVA-----WQDAGKVELVEGS-SYLGQPLPFSLTTLIWI---EVIVIGYIEYQR---NAELDPVKRLYPGGYFDPLGLASDPGKLENLQLAEIKHARLAMVAFLIFGIQA 825
            R RE E+IH RWAMLG LG +  E L+  GV      W  AG     EG   YLG P      +++ I   +V+++G++E  R       + + ++YPGG FDPLGLA DP     L++ EIK+ RLAM +   F +QA
Sbjct:   93 RNRELEVIHCRWAMLGALGCVFPEILSKNGVTFGEAVWFKAGSQIFSEGGLDYLGNPNLIHAQSILAIWAAQVVLMGFVEGYRVGGGPLGEGLDKIYPGGAFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQA 231          
BLAST of CK934401 vs. ExPASy Swiss-Prot
Match: CB25_SOLLC (Chlorophyll a-b binding protein 5, chloroplastic (Fragment) OS=Solanum lycopersicum GN=CAB5 PE=2 SV=1)

HSP 1 Score: 83.9593 bits (206), Expect = 1.167e-15
Identity = 56/139 (40.29%), Postives = 77/139 (55.40%), Query Frame = 1
Query:  451 RFRECELIHGRWAMLGTLGAIAVEALT--GVA-----WQDAGKVELVEGS-SYLGQPLPFSLTTLIWI---EVIVIGYIEYQR---NAELDPVKRLYPGGYFDPLGLASDPGKLENLQLAEIKHARLAMVAFLIFGIQA 825
            R RE E+IH RWAMLG LG +  E L+  GV      W  AG     EG   YLG P      +++ I   +V+++G++E  R       + + ++YPGG FDPLGLA DP     L++ EIK+ RLAM +   F +QA
Sbjct:   65 RNRELEVIHCRWAMLGALGCVFPEILSKNGVTFGEAVWFKAGSQIFSEGGLDYLGNPNLIHAQSILAIWASQVVLMGFVEGYRVGGGPLGEGLDKIYPGGAFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQA 203          
BLAST of CK934401 vs. ExPASy Swiss-Prot
Match: CB22_SOYBN (Chlorophyll a-b binding protein 2, chloroplastic OS=Glycine max GN=CAB2 PE=3 SV=1)

HSP 1 Score: 83.9593 bits (206), Expect = 1.167e-15
Identity = 59/140 (42.14%), Postives = 75/140 (53.57%), Query Frame = 1
Query:  457 RECELIHGRWAMLGTLGAIAVEALT--GV-----AWQDAGKVELVEGS-SYLGQPLPFSLTTLIWI---EVIVIGYIEYQRNAE------LDPVKRLYPGGYFDPLGLASDPGKLENLQLAEIKHARLAMVAFLIFGIQA 825
            RE E+IH RWAMLG LG +  E L   GV      W  AG     EG   YLG P      +++ I   +VI++G +E  R A        DP+   YPGG FDPLGLA DP  L  L++ E+K+ RLAM +   F +QA
Sbjct:   86 RELEVIHSRWAMLGALGCVFPELLARNGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLIHAQSILAIWATQVILMGAVEGYRIAGGPLGEVTDPI---YPGGSFDPLGLADDPEALAELKVKELKNGRLAMFSMFGFFVQA 222          
BLAST of CK934401 vs. ExPASy Swiss-Prot
Match: CB21_CUCSA (Chlorophyll a-b binding protein of LHCII type I, chloroplastic (Fragment) OS=Cucumis sativus PE=2 SV=1)

HSP 1 Score: 83.9593 bits (206), Expect = 1.167e-15
Identity = 71/213 (33.33%), Postives = 91/213 (42.72%), Query Frame = 1
Query:  238 PPEWLDGTMVGDRGFDPLGLGKPTEYLQYDFDSLDQNLAKNDVGELLGVITDSGELQPTPLQPYTEVFGLQRFRECELIHGRWAMLGTLGAIAVEALT--GV-----AWQDAGKVELVEGS-SYLGQPLPFSLTTLIWI---EVIVIGYIEYQRNAE------LDPVKRLYPGGYFDPLGLASDPGKLENLQLAEIKHARLAMVAFLIFGIQA 825
            PP +L G   GD G+D  GL    E             AKN                                RE E+IH RWAMLG LG +  E L+  GV      W  AG     EG   YLG P      +++ I   +V+++G +E  R A        DP+   YPGG FDPLGLA DP     L++ E+K+ RLAM +   F +QA
Sbjct:   55 PPSYLTGEFPGDYGWDTAGLSADPE-----------TFAKN--------------------------------RELEVIHSRWAMLGALGCVFPELLSRNGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWACQVVLMGAVEGYRIAGGPLGEVTDPI---YPGGSFDPLGLADDPEAFAELKVKELKNGRLAMFSMFGFFVQA 221          
BLAST of CK934401 vs. ExPASy Swiss-Prot
Match: CB28_PEA (Chlorophyll a-b binding protein 8, chloroplastic OS=Pisum sativum GN=CAB8 PE=1 SV=1)

HSP 1 Score: 83.5741 bits (205), Expect = 1.525e-15
Identity = 58/137 (42.34%), Postives = 75/137 (54.74%), Query Frame = 1
Query:  457 RECELIHGRWAMLGTLGAIAVEALT--GV-----AWQDAGKVELVEGS-SYLGQPLPFSLTTLIWI---EVIVIGYIEYQRNAEL---DPVKRLYPGGYFDPLGLASDPGKLENLQLAEIKHARLAMVAFLIFGIQA 825
            RE E+IH RWAMLG LG +  E L+  GV      W  AG     EG   YLG P      +++ I   +VI++G +E  R A     + V  LYPGG FDPLGLA DP     L++ E+K+ RLAM +   F +QA
Sbjct:   98 RELEVIHSRWAMLGALGCVFPELLSRNGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWATQVILMGAVEGYRIAGGPLGEVVDPLYPGGSFDPLGLADDPEAFAELKVKELKNGRLAMFSMFGFFVQA 234          
BLAST of CK934401 vs. ExPASy Swiss-Prot
Match: CB24_SOLLC (Chlorophyll a-b binding protein 4, chloroplastic OS=Solanum lycopersicum GN=CAB4 PE=2 SV=1)

HSP 1 Score: 83.5741 bits (205), Expect = 1.525e-15
Identity = 56/139 (40.29%), Postives = 77/139 (55.40%), Query Frame = 1
Query:  451 RFRECELIHGRWAMLGTLGAIAVEALT--GV-----AWQDAGKVELVEGS-SYLGQPLPFSLTTLIWI---EVIVIGYIEYQR---NAELDPVKRLYPGGYFDPLGLASDPGKLENLQLAEIKHARLAMVAFLIFGIQA 825
            R RE E+IH RWAMLG LG +  E L+  GV      W  AG     EG   YLG P      +++ I   +V+++G++E  R       + + ++YPGG FDPLGLA DP     L++ EIK+ RLAM +   F +QA
Sbjct:   93 RNRELEVIHCRWAMLGALGCVFPEILSKNGVKFGEAVWFKAGSQIFSEGGLDYLGNPNLVHAQSILAIWACQVVLMGFVEGYRVGGGPLGEGLDKIYPGGAFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQA 231          
BLAST of CK934401 vs. ExPASy Swiss-Prot
Match: CB23_APIGR (Chlorophyll a-b binding protein, chloroplastic OS=Apium graveolens GN=LHC0 PE=1 SV=1)

HSP 1 Score: 83.5741 bits (205), Expect = 1.525e-15
Identity = 59/140 (42.14%), Postives = 76/140 (54.29%), Query Frame = 1
Query:  457 RECELIHGRWAMLGTLGAIAVEALT--GV-----AWQDAGKVELVEGS-SYLGQPLPFSLTTLIWI---EVIVIGYIEYQRNAE------LDPVKRLYPGGYFDPLGLASDPGKLENLQLAEIKHARLAMVAFLIFGIQA 825
            RE E+IH RWAMLG LG +  E L   GV      W  AG     EG   YLG P      +++ I   +VI++G +E  R A       +DP   LYPGG FDPLGLA DP +   L++ E+K+ RLAM +   F +QA
Sbjct:   94 RELEVIHSRWAMLGALGCVFPELLARNGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILSIWATQVILMGAVEGYRVAGGPLGEIVDP---LYPGGSFDPLGLAEDPERSAELKVKELKNGRLAMFSMFGFFVQA 230          
The following BLAST results are available for this feature:
BLAST of CK934401 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 67
Match NameE-valueIdentityDescription
CB21_ARATH6.844e-1641.43Chlorophyll a-b binding protein 165/180, chloropla... [more]
CB2_PHYPA8.938e-1633.49Chlorophyll a-b binding protein, chloroplastic OS=... [more]
CB2_CHLMO1.167e-1538.89Chlorophyll a-b binding protein of LHCII type I, c... [more]
CB26_PETSP1.167e-1540.29Chlorophyll a-b binding protein 37, chloroplastic ... [more]
CB25_SOLLC1.167e-1540.29Chlorophyll a-b binding protein 5, chloroplastic (... [more]
CB22_SOYBN1.167e-1542.14Chlorophyll a-b binding protein 2, chloroplastic O... [more]
CB21_CUCSA1.167e-1533.33Chlorophyll a-b binding protein of LHCII type I, c... [more]
CB28_PEA1.525e-1542.34Chlorophyll a-b binding protein 8, chloroplastic O... [more]
CB24_SOLLC1.525e-1540.29Chlorophyll a-b binding protein 4, chloroplastic O... [more]
CB23_APIGR1.525e-1542.14Chlorophyll a-b binding protein, chloroplastic OS=... [more]

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Properties
Property NameValue
Genbank descriptionCGF1004259_E12 Developing fruit peel at 38 DAFB Citrus sinensis cDNA clone P38DAB10004_IIF_E12 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK934401 ID=CK934401; Name=CK934401; organism=Citrus sinensis; type=EST; length=832bp
GCGGGAGTACACTGGAAGTCACATATTCTATCCNNNATCNNNTTATCAGC
GATGGCCACCACCACTACAGCAGCAGCATCACATTTCTTCGGGACGAGAA
TTCATGGGGCTGTCGTGAAACAAAGATCGGGAAAATTCCAAGCCAGGTTC
AGCTTTCGCAAGAAAAAATCCCCACCAGCCAAAAAGGCCAGGCCTACACG
AGACTCCGACCGGCTTGTCTGGTTCCCCGGCGCCACCCCGCCGGAATGGC
TCGACGGGACAATGGTGGGTGACCGTGGGTTCGACCCGTTGGGGCTGGGG
AAGCCAACAGAGTACTTGCAGTATGATTTTGACTCGTTGGATCAGAACTT
GGCCAAGAACGATGTCGGCGAGCTTCTCGGAGTGATTACTGATTCCGGGG
AGCTGCAGCCGACGCCGCTGCAGCCGTACACGGAGGTATTTGGGCTGCAG
AGGTTTAGAGAATGTGAGCTGATTCATGGAAGGTGGGCCATGTTGGGTAC
CCTTGGCGCCATTGCTGTTGAAGCTCTCACTGGTGTCGCATGGCAGGATG
CTGGAAAGGTGGAGCTGGTGGAGGGTTCATCTTATCTTGGCCAACCACTT
CCATTTTCATTAACAACATTGATTTGGATTGAAGTTATTGTGATTGGGTA
CATAGAATATCAAAGAAATGCAGAGCTTGATCCAGTGAAAAGACTATACC
CTGGTGGGTATTTTGATCCTCTTGGCTTGGCCTCAGATCCTGGGAAGCTT
GAAAATCTTCAATTGGCTGAAATCAAGCACGCTCGTCTAGCAATGGTAGC
ATTTTTAATCTTTGGAATCCAGGCTGCTTTTA
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