CK934401
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Alignments
Homology
BLAST of CK934401 vs. ExPASy Swiss-Prot
Match: CB21_ARATH (Chlorophyll a-b binding protein 165/180, chloroplastic OS=Arabidopsis thaliana GN=LHCP-A PE=1 SV=1) HSP 1 Score: 84.7297 bits (208), Expect = 6.844e-16 Identity = 58/140 (41.43%), Postives = 76/140 (54.29%), Query Frame = 1 Query: 451 RFRECELIHGRWAMLGTLGAIAVEALT--GV-----AWQDAGKVELVEGS-SYLGQPLPFSLTTLIWI---EVIVIGYIEYQRNAELDPVKR----LYPGGYFDPLGLASDPGKLENLQLAEIKHARLAMVAFLIFGIQA 825 R RE E+IH RWAMLG LG + E L GV W AG +G YLG P +++ I +VI++G +E R A P+ LYPGG FDPLGLA+DP L++ E+K+ RLAM + F +QA Sbjct: 94 RNRELEVIHSRWAMLGALGCVFPELLARNGVKFGEAVWFKAGSQIFSDGGLDYLGNPSLVHAQSILAIWATQVILMGAVEGYRVAGNGPLGEAEDLLYPGGSFDPLGLATDPEAFAELKVKELKNGRLAMFSMFGFFVQA 233
BLAST of CK934401 vs. ExPASy Swiss-Prot
Match: CB2_PHYPA (Chlorophyll a-b binding protein, chloroplastic OS=Physcomitrella patens PE=3 SV=1) HSP 1 Score: 84.3445 bits (207), Expect = 8.938e-16 Identity = 73/218 (33.49%), Postives = 94/218 (43.12%), Query Frame = 1 Query: 223 FPGATPPEWLDGTMVGDRGFDPLGLGKPTEYLQYDFDSLDQNLAKNDVGELLGVITDSGELQPTPLQPYTEVFGLQRFRECELIHGRWAMLGTLGAIAVEAL--TGV-----AWQDAGKVELVEGS-SYLGQPLPFSLTTLIWI---EVIVIGYIEYQRNAE------LDPVKRLYPGGYFDPLGLASDPGKLENLQLAEIKHARLAMVAFLIFGIQA 825 F G TP +L+G GD G+D GL E A+N RE E+IH RWAMLG LG + E L +GV W AG EG YLG P +++ I +V+++G +E R A DP+ YPGG FDPLGLA DP L++ EIK+ RLAM + F +QA Sbjct: 64 FSGETP-SYLNGEFAGDYGWDTAGLSSDPE-----------TFARN--------------------------------RELEVIHARWAMLGALGCLTPELLAKSGVKFGEAVWFKAGAQIFSEGGLDYLGNPSLVHAQSILAIWACQVVLMGAVEGYRVAGGPLGEVTDPI---YPGGSFDPLGLADDPDTFAELKVKEIKNGRLAMFSMFGFFVQA 234
BLAST of CK934401 vs. ExPASy Swiss-Prot
Match: CB2_CHLMO (Chlorophyll a-b binding protein of LHCII type I, chloroplastic OS=Chlamydomonas moewusii PE=2 SV=1) HSP 1 Score: 83.9593 bits (206), Expect = 1.167e-15 Identity = 56/144 (38.89%), Postives = 76/144 (52.78%), Query Frame = 1 Query: 448 QRFRECELIHGRWAMLGTLGAIAVEALTGVA--------WQDAGKVELVEGS-SYLGQPLPF---SLTTLIWIEVIVIGYIEYQR------NAELDPVKRLYPGGYFDPLGLASDPGKLENLQLAEIKHARLAMVAFLIFGIQA 825 +++RE E+IH RWA+LG LG + E L+ A W AG EG YLG P ++ + ++V+++G IE R LDP LYPG FDPLGLA DP L++ EIK+ RLAM + F +QA Sbjct: 82 KKYRELEVIHARWALLGALGILTPELLSTYAGVKFGEPVWFKAGAQIFSEGGLDYLGSPALIHAQNIVATLAVQVVLMGLIEGYRVNGGPAGEGLDP---LYPGESFDPLGLADDPDTFAELKVKEIKNGRLAMFSCFGFFVQA 222
BLAST of CK934401 vs. ExPASy Swiss-Prot
Match: CB26_PETSP (Chlorophyll a-b binding protein 37, chloroplastic OS=Petunia sp. GN=CAB37 PE=3 SV=1) HSP 1 Score: 83.9593 bits (206), Expect = 1.167e-15 Identity = 56/139 (40.29%), Postives = 77/139 (55.40%), Query Frame = 1 Query: 451 RFRECELIHGRWAMLGTLGAIAVEALT--GVA-----WQDAGKVELVEGS-SYLGQPLPFSLTTLIWI---EVIVIGYIEYQR---NAELDPVKRLYPGGYFDPLGLASDPGKLENLQLAEIKHARLAMVAFLIFGIQA 825 R RE E+IH RWAMLG LG + E L+ GV W AG EG YLG P +++ I +V+++G++E R + + ++YPGG FDPLGLA DP L++ EIK+ RLAM + F +QA Sbjct: 93 RNRELEVIHCRWAMLGALGCVFPEILSKNGVTFGEAVWFKAGSQIFSEGGLDYLGNPNLIHAQSILAIWAAQVVLMGFVEGYRVGGGPLGEGLDKIYPGGAFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQA 231
BLAST of CK934401 vs. ExPASy Swiss-Prot
Match: CB25_SOLLC (Chlorophyll a-b binding protein 5, chloroplastic (Fragment) OS=Solanum lycopersicum GN=CAB5 PE=2 SV=1) HSP 1 Score: 83.9593 bits (206), Expect = 1.167e-15 Identity = 56/139 (40.29%), Postives = 77/139 (55.40%), Query Frame = 1 Query: 451 RFRECELIHGRWAMLGTLGAIAVEALT--GVA-----WQDAGKVELVEGS-SYLGQPLPFSLTTLIWI---EVIVIGYIEYQR---NAELDPVKRLYPGGYFDPLGLASDPGKLENLQLAEIKHARLAMVAFLIFGIQA 825 R RE E+IH RWAMLG LG + E L+ GV W AG EG YLG P +++ I +V+++G++E R + + ++YPGG FDPLGLA DP L++ EIK+ RLAM + F +QA Sbjct: 65 RNRELEVIHCRWAMLGALGCVFPEILSKNGVTFGEAVWFKAGSQIFSEGGLDYLGNPNLIHAQSILAIWASQVVLMGFVEGYRVGGGPLGEGLDKIYPGGAFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQA 203
BLAST of CK934401 vs. ExPASy Swiss-Prot
Match: CB22_SOYBN (Chlorophyll a-b binding protein 2, chloroplastic OS=Glycine max GN=CAB2 PE=3 SV=1) HSP 1 Score: 83.9593 bits (206), Expect = 1.167e-15 Identity = 59/140 (42.14%), Postives = 75/140 (53.57%), Query Frame = 1 Query: 457 RECELIHGRWAMLGTLGAIAVEALT--GV-----AWQDAGKVELVEGS-SYLGQPLPFSLTTLIWI---EVIVIGYIEYQRNAE------LDPVKRLYPGGYFDPLGLASDPGKLENLQLAEIKHARLAMVAFLIFGIQA 825 RE E+IH RWAMLG LG + E L GV W AG EG YLG P +++ I +VI++G +E R A DP+ YPGG FDPLGLA DP L L++ E+K+ RLAM + F +QA Sbjct: 86 RELEVIHSRWAMLGALGCVFPELLARNGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLIHAQSILAIWATQVILMGAVEGYRIAGGPLGEVTDPI---YPGGSFDPLGLADDPEALAELKVKELKNGRLAMFSMFGFFVQA 222
BLAST of CK934401 vs. ExPASy Swiss-Prot
Match: CB21_CUCSA (Chlorophyll a-b binding protein of LHCII type I, chloroplastic (Fragment) OS=Cucumis sativus PE=2 SV=1) HSP 1 Score: 83.9593 bits (206), Expect = 1.167e-15 Identity = 71/213 (33.33%), Postives = 91/213 (42.72%), Query Frame = 1 Query: 238 PPEWLDGTMVGDRGFDPLGLGKPTEYLQYDFDSLDQNLAKNDVGELLGVITDSGELQPTPLQPYTEVFGLQRFRECELIHGRWAMLGTLGAIAVEALT--GV-----AWQDAGKVELVEGS-SYLGQPLPFSLTTLIWI---EVIVIGYIEYQRNAE------LDPVKRLYPGGYFDPLGLASDPGKLENLQLAEIKHARLAMVAFLIFGIQA 825 PP +L G GD G+D GL E AKN RE E+IH RWAMLG LG + E L+ GV W AG EG YLG P +++ I +V+++G +E R A DP+ YPGG FDPLGLA DP L++ E+K+ RLAM + F +QA Sbjct: 55 PPSYLTGEFPGDYGWDTAGLSADPE-----------TFAKN--------------------------------RELEVIHSRWAMLGALGCVFPELLSRNGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWACQVVLMGAVEGYRIAGGPLGEVTDPI---YPGGSFDPLGLADDPEAFAELKVKELKNGRLAMFSMFGFFVQA 221
BLAST of CK934401 vs. ExPASy Swiss-Prot
Match: CB28_PEA (Chlorophyll a-b binding protein 8, chloroplastic OS=Pisum sativum GN=CAB8 PE=1 SV=1) HSP 1 Score: 83.5741 bits (205), Expect = 1.525e-15 Identity = 58/137 (42.34%), Postives = 75/137 (54.74%), Query Frame = 1 Query: 457 RECELIHGRWAMLGTLGAIAVEALT--GV-----AWQDAGKVELVEGS-SYLGQPLPFSLTTLIWI---EVIVIGYIEYQRNAEL---DPVKRLYPGGYFDPLGLASDPGKLENLQLAEIKHARLAMVAFLIFGIQA 825 RE E+IH RWAMLG LG + E L+ GV W AG EG YLG P +++ I +VI++G +E R A + V LYPGG FDPLGLA DP L++ E+K+ RLAM + F +QA Sbjct: 98 RELEVIHSRWAMLGALGCVFPELLSRNGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWATQVILMGAVEGYRIAGGPLGEVVDPLYPGGSFDPLGLADDPEAFAELKVKELKNGRLAMFSMFGFFVQA 234
BLAST of CK934401 vs. ExPASy Swiss-Prot
Match: CB24_SOLLC (Chlorophyll a-b binding protein 4, chloroplastic OS=Solanum lycopersicum GN=CAB4 PE=2 SV=1) HSP 1 Score: 83.5741 bits (205), Expect = 1.525e-15 Identity = 56/139 (40.29%), Postives = 77/139 (55.40%), Query Frame = 1 Query: 451 RFRECELIHGRWAMLGTLGAIAVEALT--GV-----AWQDAGKVELVEGS-SYLGQPLPFSLTTLIWI---EVIVIGYIEYQR---NAELDPVKRLYPGGYFDPLGLASDPGKLENLQLAEIKHARLAMVAFLIFGIQA 825 R RE E+IH RWAMLG LG + E L+ GV W AG EG YLG P +++ I +V+++G++E R + + ++YPGG FDPLGLA DP L++ EIK+ RLAM + F +QA Sbjct: 93 RNRELEVIHCRWAMLGALGCVFPEILSKNGVKFGEAVWFKAGSQIFSEGGLDYLGNPNLVHAQSILAIWACQVVLMGFVEGYRVGGGPLGEGLDKIYPGGAFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQA 231
BLAST of CK934401 vs. ExPASy Swiss-Prot
Match: CB23_APIGR (Chlorophyll a-b binding protein, chloroplastic OS=Apium graveolens GN=LHC0 PE=1 SV=1) HSP 1 Score: 83.5741 bits (205), Expect = 1.525e-15 Identity = 59/140 (42.14%), Postives = 76/140 (54.29%), Query Frame = 1 Query: 457 RECELIHGRWAMLGTLGAIAVEALT--GV-----AWQDAGKVELVEGS-SYLGQPLPFSLTTLIWI---EVIVIGYIEYQRNAE------LDPVKRLYPGGYFDPLGLASDPGKLENLQLAEIKHARLAMVAFLIFGIQA 825 RE E+IH RWAMLG LG + E L GV W AG EG YLG P +++ I +VI++G +E R A +DP LYPGG FDPLGLA DP + L++ E+K+ RLAM + F +QA Sbjct: 94 RELEVIHSRWAMLGALGCVFPELLARNGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILSIWATQVILMGAVEGYRVAGGPLGEIVDP---LYPGGSFDPLGLAEDPERSAELKVKELKNGRLAMFSMFGFFVQA 230 The following BLAST results are available for this feature:
BLAST of CK934401 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 67
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Sequences
The
following sequences are available for this feature:
EST sequence >CK934401 ID=CK934401; Name=CK934401; organism=Citrus sinensis; type=EST; length=832bpback to top |