CK934401

Overview
NameCK934401
Unique NameCK934401
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length832
Libraries
Library NameType
Developing fruit peel at 38 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CK934401 vs. ExPASy Swiss-Prot
Match: CB24_PETSP (Chlorophyll a-b binding protein 25, chloroplastic OS=Petunia sp. GN=CAB25 PE=3 SV=1)

HSP 1 Score: 82.4185 bits (202), Expect = 3.397e-15
Identity = 59/140 (42.14%), Postives = 75/140 (53.57%), Query Frame = 1
Query:  457 RECELIHGRWAMLGTLGAIAVE--ALTGV-----AWQDAGKVELVEGS-SYLGQPLPFSLTTLIWI---EVIVIGYIEYQRNAE------LDPVKRLYPGGYFDPLGLASDPGKLENLQLAEIKHARLAMVAFLIFGIQA 825
            RE E+IH RWAMLG LG +  E  A  GV      W  AG     EG   YLG P      +++ I   +V+++G +E  R A       +DP   LYPGG FDPLGLA DP     L++ EIK+ RLAM +   F +QA
Sbjct:   96 RELEVIHCRWAMLGALGCVFPELFARNGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWACQVVLMGAVEGYRVAGGPLGEVIDP---LYPGGSFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQA 232          
BLAST of CK934401 vs. ExPASy Swiss-Prot
Match: CB23_TOBAC (Chlorophyll a-b binding protein 36, chloroplastic OS=Nicotiana tabacum GN=CAB36 PE=3 SV=1)

HSP 1 Score: 82.4185 bits (202), Expect = 3.397e-15
Identity = 56/139 (40.29%), Postives = 76/139 (54.68%), Query Frame = 1
Query:  451 RFRECELIHGRWAMLGTLGAIAVEALT--GV-----AWQDAGKVELVEGS-SYLGQPLPFSLTTLIWI---EVIVIGYIEYQR---NAELDPVKRLYPGGYFDPLGLASDPGKLENLQLAEIKHARLAMVAFLIFGIQA 825
            R RE E+IH RWAMLG LG +  E L+  GV      W  AG     EG   YLG P      +++ +   +V+++G IE  R       + + ++YPGG FDPLGLA DP     L++ EIK+ RLAM +   F +QA
Sbjct:   93 RNRELEVIHCRWAMLGALGCVFPEILSKNGVKFGEAVWFKAGSQIFSEGGLDYLGNPNLIHAQSILAVWASQVVLMGLIEGYRVGGGPLGEGLDKIYPGGAFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQA 231          
BLAST of CK934401 vs. ExPASy Swiss-Prot
Match: CB21_TOBAC (Chlorophyll a-b binding protein 16, chloroplastic OS=Nicotiana tabacum GN=CAB16 PE=2 SV=1)

HSP 1 Score: 82.4185 bits (202), Expect = 3.397e-15
Identity = 58/137 (42.34%), Postives = 74/137 (54.01%), Query Frame = 1
Query:  457 RECELIHGRWAMLGTLGAIAVEALT--GV-----AWQDAGKVELVEGS-SYLGQPLPFSLTTLIWI---EVIVIGYIEYQRNAEL---DPVKRLYPGGYFDPLGLASDPGKLENLQLAEIKHARLAMVAFLIFGIQA 825
            RE E+IH RWAMLG LG +  E L   GV      W  AG     EG   YLG P      +++ I   +V+++G +E  R A     + V  LYPGG FDPLGLA DP     L++ EIK+ RLAM +   F +QA
Sbjct:   96 RELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWACQVVLMGAVEGYRVAGGPLGEVVDPLYPGGSFDPLGLAEDPEAFAELKVKEIKNGRLAMFSMFGFFVQA 232          
BLAST of CK934401 vs. ExPASy Swiss-Prot
Match: CB2_CHLRE (Chlorophyll a-b binding protein of LHCII type I, chloroplastic OS=Chlamydomonas reinhardtii GN=cabII-1 PE=3 SV=1)

HSP 1 Score: 82.0333 bits (201), Expect = 4.436e-15
Identity = 58/143 (40.56%), Postives = 71/143 (49.65%), Query Frame = 1
Query:  448 QRFRECELIHGRWAMLGTLGAIAVEALTG-------VAWQDAGKVELVEGS-SYLGQPLPFSLTTLIW---IEVIVIGYIEYQR------NAELDPVKRLYPGGYFDPLGLASDPGKLENLQLAEIKHARLAMVAFLIFGIQA 825
            +R+RE ELIH RWAMLG LG    E L           W  AG     EG   YLG P       ++    ++VI++G IE  R         LDP   LYPG  FDPLGLA DP     L++ EIK+ RLA  +   F +QA
Sbjct:   80 KRYRELELIHARWAMLGALGCQTPELLAKSGTKFGEAVWFKAGAQIFSEGGLDYLGNPSLVHAQNIVATSAVQVILMGLIEGYRVNGGPAGEGLDP---LYPGESFDPLGLADDPDTFAELKVKEIKNGRLASFSMFGFFVQA 219          
BLAST of CK934401 vs. ExPASy Swiss-Prot
Match: CB27_TOBAC (Chlorophyll a-b binding protein 7, chloroplastic OS=Nicotiana tabacum GN=CAB7 PE=3 SV=1)

HSP 1 Score: 82.0333 bits (201), Expect = 4.436e-15
Identity = 60/140 (42.86%), Postives = 74/140 (52.86%), Query Frame = 1
Query:  457 RECELIHGRWAMLGTLGAIAVEALT--GV-----AWQDAGKVELVEGS-SYLGQPLPFSLTTLIWI---EVIVIGYIEYQRNAE------LDPVKRLYPGGYFDPLGLASDPGKLENLQLAEIKHARLAMVAFLIFGIQA 825
            RE E+IH RWAMLG LG +  E L   GV      W  AG     EG   YLG P      +++ I   +V+++G IE  R A        DP   LYPGG FDPLGLA DP     L++ EIK+ RLAM +   F +QA
Sbjct:   97 RELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWACQVVLMGAIEGYRVAGGPLGEVTDP---LYPGGSFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQA 233          
BLAST of CK934401 vs. ExPASy Swiss-Prot
Match: CB23_PETSP (Chlorophyll a-b binding protein 22R, chloroplastic OS=Petunia sp. GN=CAB22R PE=3 SV=1)

HSP 1 Score: 81.6481 bits (200), Expect = 5.794e-15
Identity = 58/140 (41.43%), Postives = 75/140 (53.57%), Query Frame = 1
Query:  457 RECELIHGRWAMLGTLGAIAVE--ALTGV-----AWQDAGKVELVEGS-SYLGQPLPFSLTTLIWI---EVIVIGYIEYQRNAE------LDPVKRLYPGGYFDPLGLASDPGKLENLQLAEIKHARLAMVAFLIFGIQA 825
            RE E+IH RWAMLG LG +  E  A  G+      W  AG     EG   YLG P      +++ I   +V+++G +E  R A       +DP   LYPGG FDPLGLA DP     L++ EIK+ RLAM +   F +QA
Sbjct:   97 RELEVIHCRWAMLGALGCVFPELFARNGIKFGEAVWFKAGAQIFSEGGLDYLGNPSLVHAQSILAIWACQVVLMGAVEGYRVAGGPLGEVIDP---LYPGGSFDPLGLAEDPEAFAELKVKEIKNGRLAMFSMFGFFVQA 233          
BLAST of CK934401 vs. ExPASy Swiss-Prot
Match: CB22_CUCSA (Chlorophyll a-b binding protein of LHCII type 1 (Fragment) OS=Cucumis sativus PE=2 SV=1)

HSP 1 Score: 81.6481 bits (200), Expect = 5.794e-15
Identity = 70/213 (32.86%), Postives = 90/213 (42.25%), Query Frame = 1
Query:  238 PPEWLDGTMVGDRGFDPLGLGKPTEYLQYDFDSLDQNLAKNDVGELLGVITDSGELQPTPLQPYTEVFGLQRFRECELIHGRWAMLGTLGAIAVEALT--GV-----AWQDAGKVELVEGS-SYLGQPLPFSLTTLIWI---EVIVIGYIEYQRNAE------LDPVKRLYPGGYFDPLGLASDPGKLENLQLAEIKHARLAMVAFLIFGIQA 825
            PP +L G   GD G+D  GL    E             AKN                                RE E+IH  WAMLG LG +  E L+  GV      W  AG     EG   YLG P      +++ I   +V+++G +E  R A        DP+   YPGG FDPLGLA DP     L++ E+K+ RLAM +   F +QA
Sbjct:    6 PPSYLTGEFPGDYGWDTAGLSADPE-----------TFAKN--------------------------------RELEVIHSTWAMLGALGCVFPELLSRNGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWACQVVLMGAVEGYRIAGGPLGEVTDPI---YPGGSFDPLGLADDPEAFAELKVKELKNGRLAMFSMFGFFVQA 172          
BLAST of CK934401 vs. ExPASy Swiss-Prot
Match: CB22_HORVU (Chlorophyll a-b binding protein 2, chloroplastic OS=Hordeum vulgare GN=CAB2 PE=3 SV=1)

HSP 1 Score: 80.8777 bits (198), Expect = 9.883e-15
Identity = 57/137 (41.61%), Postives = 73/137 (53.28%), Query Frame = 1
Query:  457 RECELIHGRWAMLGTLGAIAVEALT--GV-----AWQDAGKVELVEGS-SYLGQPLPFSLTTLIWI---EVIVIGYIEYQRNAEL---DPVKRLYPGGYFDPLGLASDPGKLENLQLAEIKHARLAMVAFLIFGIQA 825
            RE E+IHGRWAMLG LG +  E L   GV      W   G     EG   YLG P      +++ I   +V+++G +E  R A     + V  LYPGG FDPLGLA D      L++ EIK+ RLAM +   F +QA
Sbjct:   94 RELEVIHGRWAMLGALGCVFPELLARNGVKFGEAVWFKKGSQIFSEGGLQYLGNPSLVHAQSILAIWACQVVLMGAVEGYRVAGGPLGEVVDPLYPGGSFDPLGLADDAEAFAELKVKEIKNGRLAMFSMFGFFVQA 230          
BLAST of CK934401 vs. ExPASy Swiss-Prot
Match: CB21_SOYBN (Chlorophyll a-b binding protein, chloroplastic (Fragment) OS=Glycine max PE=2 SV=1)

HSP 1 Score: 80.8777 bits (198), Expect = 9.883e-15
Identity = 75/213 (35.21%), Postives = 92/213 (43.19%), Query Frame = 1
Query:  238 PPEWLDGTMVGDRGFDPLGLGKPTEYLQYDFDSLDQNLAKNDVGELLGVITDSGELQPTPLQPYTEVFGLQRFRECELIHGRWAMLGTLGAIAVEALT--GV-----AWQDAGKVELVEGS-SYLG-QPLPFSLTTL-IWI-EVIVIGYIEYQRNAE------LDPVKRLYPGGYFDPLGLASDPGKLENLQLAEIKHARLAMVAFLIFGIQA 825
            PP +L G   GD G+D  GL    E             AKN                                RE E+IH RWAMLG LG +  E L   GV     +W  AG     EG   YLG Q L  + + L IW  +VI++G +E  R A        DP+   YPGG FDPL LA DP     L++ EIK+ RLAM +   F +QA
Sbjct:   45 PPSYLTGEFPGDYGWDTAGLSADPE-----------TFAKN--------------------------------RELEVIHSRWAMLGALGCVFPELLARNGVKFGEASWFKAGSQIFSEGGLDYLGNQSLIHAQSILAIWATQVILMGAVEGYRIAGGPLGEVTDPI---YPGGSFDPLALADDPEAFAELKVKEIKNGRLAMFSMFGFFVQA 211          
BLAST of CK934401 vs. ExPASy Swiss-Prot
Match: CB2_DUNSA (Chlorophyll a-b binding protein of LHCII type I, chloroplastic OS=Dunaliella salina PE=2 SV=1)

HSP 1 Score: 80.4925 bits (197), Expect = 1.291e-14
Identity = 55/145 (37.93%), Postives = 74/145 (51.03%), Query Frame = 1
Query:  448 QRFRECELIHGRWAMLGTLGAIAVEALT---------GVAWQDAGKVELVEGS-SYLGQPLPF---SLTTLIWIEVIVIGYIEYQR------NAELDPVKRLYPGGYFDPLGLASDPGKLENLQLAEIKHARLAMVAFLIFGIQA 825
            +R+RE ELIH R  +LG LG +  E L             W  AG     +G  +YLG P      ++   + ++V+++G +E  R         LDP   LYPG  FDPLGLA DP     L++ EIK+ RLAM A L F +QA
Sbjct:   99 KRYRELELIHARCGLLGALGMVTPELLADEDGIKFGDAAIWFKAGAAIFQDGGLNYLGNPSLIHAQNIVATLAVQVVLMGLVEGYRVNGGPAGEGLDP---LYPGEAFDPLGLADDPDTFAELKVKEIKNGRLAMFACLGFFVQA 240          
The following BLAST results are available for this feature:
BLAST of CK934401 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 67
Match NameE-valueIdentityDescription
CB24_PETSP3.397e-1542.14Chlorophyll a-b binding protein 25, chloroplastic ... [more]
CB23_TOBAC3.397e-1540.29Chlorophyll a-b binding protein 36, chloroplastic ... [more]
CB21_TOBAC3.397e-1542.34Chlorophyll a-b binding protein 16, chloroplastic ... [more]
CB2_CHLRE4.436e-1540.56Chlorophyll a-b binding protein of LHCII type I, c... [more]
CB27_TOBAC4.436e-1542.86Chlorophyll a-b binding protein 7, chloroplastic O... [more]
CB23_PETSP5.794e-1541.43Chlorophyll a-b binding protein 22R, chloroplastic... [more]
CB22_CUCSA5.794e-1532.86Chlorophyll a-b binding protein of LHCII type 1 (F... [more]
CB22_HORVU9.883e-1541.61Chlorophyll a-b binding protein 2, chloroplastic O... [more]
CB21_SOYBN9.883e-1535.21Chlorophyll a-b binding protein, chloroplastic (Fr... [more]
CB2_DUNSA1.291e-1437.93Chlorophyll a-b binding protein of LHCII type I, c... [more]

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Properties
Property NameValue
Genbank descriptionCGF1004259_E12 Developing fruit peel at 38 DAFB Citrus sinensis cDNA clone P38DAB10004_IIF_E12 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK934401 ID=CK934401; Name=CK934401; organism=Citrus sinensis; type=EST; length=832bp
GCGGGAGTACACTGGAAGTCACATATTCTATCCNNNATCNNNTTATCAGC
GATGGCCACCACCACTACAGCAGCAGCATCACATTTCTTCGGGACGAGAA
TTCATGGGGCTGTCGTGAAACAAAGATCGGGAAAATTCCAAGCCAGGTTC
AGCTTTCGCAAGAAAAAATCCCCACCAGCCAAAAAGGCCAGGCCTACACG
AGACTCCGACCGGCTTGTCTGGTTCCCCGGCGCCACCCCGCCGGAATGGC
TCGACGGGACAATGGTGGGTGACCGTGGGTTCGACCCGTTGGGGCTGGGG
AAGCCAACAGAGTACTTGCAGTATGATTTTGACTCGTTGGATCAGAACTT
GGCCAAGAACGATGTCGGCGAGCTTCTCGGAGTGATTACTGATTCCGGGG
AGCTGCAGCCGACGCCGCTGCAGCCGTACACGGAGGTATTTGGGCTGCAG
AGGTTTAGAGAATGTGAGCTGATTCATGGAAGGTGGGCCATGTTGGGTAC
CCTTGGCGCCATTGCTGTTGAAGCTCTCACTGGTGTCGCATGGCAGGATG
CTGGAAAGGTGGAGCTGGTGGAGGGTTCATCTTATCTTGGCCAACCACTT
CCATTTTCATTAACAACATTGATTTGGATTGAAGTTATTGTGATTGGGTA
CATAGAATATCAAAGAAATGCAGAGCTTGATCCAGTGAAAAGACTATACC
CTGGTGGGTATTTTGATCCTCTTGGCTTGGCCTCAGATCCTGGGAAGCTT
GAAAATCTTCAATTGGCTGAAATCAAGCACGCTCGTCTAGCAATGGTAGC
ATTTTTAATCTTTGGAATCCAGGCTGCTTTTA
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