CK934401
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CK934401 vs. ExPASy Swiss-Prot
Match: CB24_PETSP (Chlorophyll a-b binding protein 25, chloroplastic OS=Petunia sp. GN=CAB25 PE=3 SV=1) HSP 1 Score: 82.4185 bits (202), Expect = 3.397e-15 Identity = 59/140 (42.14%), Postives = 75/140 (53.57%), Query Frame = 1 Query: 457 RECELIHGRWAMLGTLGAIAVE--ALTGV-----AWQDAGKVELVEGS-SYLGQPLPFSLTTLIWI---EVIVIGYIEYQRNAE------LDPVKRLYPGGYFDPLGLASDPGKLENLQLAEIKHARLAMVAFLIFGIQA 825 RE E+IH RWAMLG LG + E A GV W AG EG YLG P +++ I +V+++G +E R A +DP LYPGG FDPLGLA DP L++ EIK+ RLAM + F +QA Sbjct: 96 RELEVIHCRWAMLGALGCVFPELFARNGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWACQVVLMGAVEGYRVAGGPLGEVIDP---LYPGGSFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQA 232
BLAST of CK934401 vs. ExPASy Swiss-Prot
Match: CB23_TOBAC (Chlorophyll a-b binding protein 36, chloroplastic OS=Nicotiana tabacum GN=CAB36 PE=3 SV=1) HSP 1 Score: 82.4185 bits (202), Expect = 3.397e-15 Identity = 56/139 (40.29%), Postives = 76/139 (54.68%), Query Frame = 1 Query: 451 RFRECELIHGRWAMLGTLGAIAVEALT--GV-----AWQDAGKVELVEGS-SYLGQPLPFSLTTLIWI---EVIVIGYIEYQR---NAELDPVKRLYPGGYFDPLGLASDPGKLENLQLAEIKHARLAMVAFLIFGIQA 825 R RE E+IH RWAMLG LG + E L+ GV W AG EG YLG P +++ + +V+++G IE R + + ++YPGG FDPLGLA DP L++ EIK+ RLAM + F +QA Sbjct: 93 RNRELEVIHCRWAMLGALGCVFPEILSKNGVKFGEAVWFKAGSQIFSEGGLDYLGNPNLIHAQSILAVWASQVVLMGLIEGYRVGGGPLGEGLDKIYPGGAFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQA 231
BLAST of CK934401 vs. ExPASy Swiss-Prot
Match: CB21_TOBAC (Chlorophyll a-b binding protein 16, chloroplastic OS=Nicotiana tabacum GN=CAB16 PE=2 SV=1) HSP 1 Score: 82.4185 bits (202), Expect = 3.397e-15 Identity = 58/137 (42.34%), Postives = 74/137 (54.01%), Query Frame = 1 Query: 457 RECELIHGRWAMLGTLGAIAVEALT--GV-----AWQDAGKVELVEGS-SYLGQPLPFSLTTLIWI---EVIVIGYIEYQRNAEL---DPVKRLYPGGYFDPLGLASDPGKLENLQLAEIKHARLAMVAFLIFGIQA 825 RE E+IH RWAMLG LG + E L GV W AG EG YLG P +++ I +V+++G +E R A + V LYPGG FDPLGLA DP L++ EIK+ RLAM + F +QA Sbjct: 96 RELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWACQVVLMGAVEGYRVAGGPLGEVVDPLYPGGSFDPLGLAEDPEAFAELKVKEIKNGRLAMFSMFGFFVQA 232
BLAST of CK934401 vs. ExPASy Swiss-Prot
Match: CB2_CHLRE (Chlorophyll a-b binding protein of LHCII type I, chloroplastic OS=Chlamydomonas reinhardtii GN=cabII-1 PE=3 SV=1) HSP 1 Score: 82.0333 bits (201), Expect = 4.436e-15 Identity = 58/143 (40.56%), Postives = 71/143 (49.65%), Query Frame = 1 Query: 448 QRFRECELIHGRWAMLGTLGAIAVEALTG-------VAWQDAGKVELVEGS-SYLGQPLPFSLTTLIW---IEVIVIGYIEYQR------NAELDPVKRLYPGGYFDPLGLASDPGKLENLQLAEIKHARLAMVAFLIFGIQA 825 +R+RE ELIH RWAMLG LG E L W AG EG YLG P ++ ++VI++G IE R LDP LYPG FDPLGLA DP L++ EIK+ RLA + F +QA Sbjct: 80 KRYRELELIHARWAMLGALGCQTPELLAKSGTKFGEAVWFKAGAQIFSEGGLDYLGNPSLVHAQNIVATSAVQVILMGLIEGYRVNGGPAGEGLDP---LYPGESFDPLGLADDPDTFAELKVKEIKNGRLASFSMFGFFVQA 219
BLAST of CK934401 vs. ExPASy Swiss-Prot
Match: CB27_TOBAC (Chlorophyll a-b binding protein 7, chloroplastic OS=Nicotiana tabacum GN=CAB7 PE=3 SV=1) HSP 1 Score: 82.0333 bits (201), Expect = 4.436e-15 Identity = 60/140 (42.86%), Postives = 74/140 (52.86%), Query Frame = 1 Query: 457 RECELIHGRWAMLGTLGAIAVEALT--GV-----AWQDAGKVELVEGS-SYLGQPLPFSLTTLIWI---EVIVIGYIEYQRNAE------LDPVKRLYPGGYFDPLGLASDPGKLENLQLAEIKHARLAMVAFLIFGIQA 825 RE E+IH RWAMLG LG + E L GV W AG EG YLG P +++ I +V+++G IE R A DP LYPGG FDPLGLA DP L++ EIK+ RLAM + F +QA Sbjct: 97 RELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWACQVVLMGAIEGYRVAGGPLGEVTDP---LYPGGSFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQA 233
BLAST of CK934401 vs. ExPASy Swiss-Prot
Match: CB23_PETSP (Chlorophyll a-b binding protein 22R, chloroplastic OS=Petunia sp. GN=CAB22R PE=3 SV=1) HSP 1 Score: 81.6481 bits (200), Expect = 5.794e-15 Identity = 58/140 (41.43%), Postives = 75/140 (53.57%), Query Frame = 1 Query: 457 RECELIHGRWAMLGTLGAIAVE--ALTGV-----AWQDAGKVELVEGS-SYLGQPLPFSLTTLIWI---EVIVIGYIEYQRNAE------LDPVKRLYPGGYFDPLGLASDPGKLENLQLAEIKHARLAMVAFLIFGIQA 825 RE E+IH RWAMLG LG + E A G+ W AG EG YLG P +++ I +V+++G +E R A +DP LYPGG FDPLGLA DP L++ EIK+ RLAM + F +QA Sbjct: 97 RELEVIHCRWAMLGALGCVFPELFARNGIKFGEAVWFKAGAQIFSEGGLDYLGNPSLVHAQSILAIWACQVVLMGAVEGYRVAGGPLGEVIDP---LYPGGSFDPLGLAEDPEAFAELKVKEIKNGRLAMFSMFGFFVQA 233
BLAST of CK934401 vs. ExPASy Swiss-Prot
Match: CB22_CUCSA (Chlorophyll a-b binding protein of LHCII type 1 (Fragment) OS=Cucumis sativus PE=2 SV=1) HSP 1 Score: 81.6481 bits (200), Expect = 5.794e-15 Identity = 70/213 (32.86%), Postives = 90/213 (42.25%), Query Frame = 1 Query: 238 PPEWLDGTMVGDRGFDPLGLGKPTEYLQYDFDSLDQNLAKNDVGELLGVITDSGELQPTPLQPYTEVFGLQRFRECELIHGRWAMLGTLGAIAVEALT--GV-----AWQDAGKVELVEGS-SYLGQPLPFSLTTLIWI---EVIVIGYIEYQRNAE------LDPVKRLYPGGYFDPLGLASDPGKLENLQLAEIKHARLAMVAFLIFGIQA 825 PP +L G GD G+D GL E AKN RE E+IH WAMLG LG + E L+ GV W AG EG YLG P +++ I +V+++G +E R A DP+ YPGG FDPLGLA DP L++ E+K+ RLAM + F +QA Sbjct: 6 PPSYLTGEFPGDYGWDTAGLSADPE-----------TFAKN--------------------------------RELEVIHSTWAMLGALGCVFPELLSRNGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWACQVVLMGAVEGYRIAGGPLGEVTDPI---YPGGSFDPLGLADDPEAFAELKVKELKNGRLAMFSMFGFFVQA 172
BLAST of CK934401 vs. ExPASy Swiss-Prot
Match: CB22_HORVU (Chlorophyll a-b binding protein 2, chloroplastic OS=Hordeum vulgare GN=CAB2 PE=3 SV=1) HSP 1 Score: 80.8777 bits (198), Expect = 9.883e-15 Identity = 57/137 (41.61%), Postives = 73/137 (53.28%), Query Frame = 1 Query: 457 RECELIHGRWAMLGTLGAIAVEALT--GV-----AWQDAGKVELVEGS-SYLGQPLPFSLTTLIWI---EVIVIGYIEYQRNAEL---DPVKRLYPGGYFDPLGLASDPGKLENLQLAEIKHARLAMVAFLIFGIQA 825 RE E+IHGRWAMLG LG + E L GV W G EG YLG P +++ I +V+++G +E R A + V LYPGG FDPLGLA D L++ EIK+ RLAM + F +QA Sbjct: 94 RELEVIHGRWAMLGALGCVFPELLARNGVKFGEAVWFKKGSQIFSEGGLQYLGNPSLVHAQSILAIWACQVVLMGAVEGYRVAGGPLGEVVDPLYPGGSFDPLGLADDAEAFAELKVKEIKNGRLAMFSMFGFFVQA 230
BLAST of CK934401 vs. ExPASy Swiss-Prot
Match: CB21_SOYBN (Chlorophyll a-b binding protein, chloroplastic (Fragment) OS=Glycine max PE=2 SV=1) HSP 1 Score: 80.8777 bits (198), Expect = 9.883e-15 Identity = 75/213 (35.21%), Postives = 92/213 (43.19%), Query Frame = 1 Query: 238 PPEWLDGTMVGDRGFDPLGLGKPTEYLQYDFDSLDQNLAKNDVGELLGVITDSGELQPTPLQPYTEVFGLQRFRECELIHGRWAMLGTLGAIAVEALT--GV-----AWQDAGKVELVEGS-SYLG-QPLPFSLTTL-IWI-EVIVIGYIEYQRNAE------LDPVKRLYPGGYFDPLGLASDPGKLENLQLAEIKHARLAMVAFLIFGIQA 825 PP +L G GD G+D GL E AKN RE E+IH RWAMLG LG + E L GV +W AG EG YLG Q L + + L IW +VI++G +E R A DP+ YPGG FDPL LA DP L++ EIK+ RLAM + F +QA Sbjct: 45 PPSYLTGEFPGDYGWDTAGLSADPE-----------TFAKN--------------------------------RELEVIHSRWAMLGALGCVFPELLARNGVKFGEASWFKAGSQIFSEGGLDYLGNQSLIHAQSILAIWATQVILMGAVEGYRIAGGPLGEVTDPI---YPGGSFDPLALADDPEAFAELKVKEIKNGRLAMFSMFGFFVQA 211
BLAST of CK934401 vs. ExPASy Swiss-Prot
Match: CB2_DUNSA (Chlorophyll a-b binding protein of LHCII type I, chloroplastic OS=Dunaliella salina PE=2 SV=1) HSP 1 Score: 80.4925 bits (197), Expect = 1.291e-14 Identity = 55/145 (37.93%), Postives = 74/145 (51.03%), Query Frame = 1 Query: 448 QRFRECELIHGRWAMLGTLGAIAVEALT---------GVAWQDAGKVELVEGS-SYLGQPLPF---SLTTLIWIEVIVIGYIEYQR------NAELDPVKRLYPGGYFDPLGLASDPGKLENLQLAEIKHARLAMVAFLIFGIQA 825 +R+RE ELIH R +LG LG + E L W AG +G +YLG P ++ + ++V+++G +E R LDP LYPG FDPLGLA DP L++ EIK+ RLAM A L F +QA Sbjct: 99 KRYRELELIHARCGLLGALGMVTPELLADEDGIKFGDAAIWFKAGAAIFQDGGLNYLGNPSLIHAQNIVATLAVQVVLMGLVEGYRVNGGPAGEGLDP---LYPGEAFDPLGLADDPDTFAELKVKEIKNGRLAMFACLGFFVQA 240 The following BLAST results are available for this feature:
BLAST of CK934401 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 67
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Sequences
The
following sequences are available for this feature:
EST sequence >CK934401 ID=CK934401; Name=CK934401; organism=Citrus sinensis; type=EST; length=832bpback to top |