CK934401

Overview
NameCK934401
Unique NameCK934401
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length832
Libraries
Library NameType
Developing fruit peel at 38 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig12618 contig Csv1_Contig12618:72..903. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CK934401 vs. ExPASy Swiss-Prot
Match: CB25_TOBAC (Chlorophyll a-b binding protein 50, chloroplastic OS=Nicotiana tabacum GN=CAB50 PE=2 SV=1)

HSP 1 Score: 80.4925 bits (197), Expect = 1.291e-14
Identity = 57/137 (41.61%), Postives = 73/137 (53.28%), Query Frame = 1
Query:  457 RECELIHGRWAMLGTLGAIAVEALT--GV-----AWQDAGKVELVEGS-SYLGQPLPFSLTTLIWI---EVIVIGYIEYQRNAEL---DPVKRLYPGGYFDPLGLASDPGKLENLQLAEIKHARLAMVAFLIFGIQA 825
            RE E+IH RWAMLG LG +  E L   GV      W  AG     EG   YLG P      +++ I   +V+++G +E  R A     + V  LYPGG FDPLGLA DP     L++  IK+ RLAM +   F +QA
Sbjct:   97 RELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWACQVVLMGAVEGYRVAGGPLGEVVDPLYPGGSFDPLGLAEDPEAFAELKVKHIKNGRLAMFSMFGFFVQA 233          
BLAST of CK934401 vs. ExPASy Swiss-Prot
Match: CB23_SOLLC (Chlorophyll a-b binding protein 13, chloroplastic OS=Solanum lycopersicum GN=CAB13 PE=1 SV=1)

HSP 1 Score: 80.4925 bits (197), Expect = 1.291e-14
Identity = 57/139 (41.01%), Postives = 72/139 (51.80%), Query Frame = 1
Query:  457 RECELIHGRWAMLGTLGAIAVEALTG--------VAWQDAGKVELVEGS-SYLGQPLPF---SLTTLIWIEVIVIGYIEYQRNAELDPVKR---LYPGG-YFDPLGLASDPGKLENLQLAEIKHARLAMVAFLIFGIQA 825
            R  E+IHGRWAMLG LG I  E L            W  AG     +G   YLG P      S+  ++  +V+++G +E  R   L  V     LYPGG YFDPLGLA DP     L++ EIK+ RLAM +   F +QA
Sbjct:   93 RALEVIHGRWAMLGALGCIFPEVLEKWVKVDFKEPVWFKAGSQIFSDGGLDYLGNPNLVHAQSILAVLGFQVVLMGLVEGFRINGLPGVGEGNDLYPGGQYFDPLGLADDPTTFAELKVKEIKNGRLAMFSMFGFFVQA 231          
BLAST of CK934401 vs. ExPASy Swiss-Prot
Match: CB22_PETSP (Chlorophyll a-b binding protein 22L, chloroplastic OS=Petunia sp. GN=CAB22L PE=3 SV=1)

HSP 1 Score: 80.4925 bits (197), Expect = 1.291e-14
Identity = 59/140 (42.14%), Postives = 74/140 (52.86%), Query Frame = 1
Query:  457 RECELIHGRWAMLGTLGAIAVE--ALTGV-----AWQDAGKVELVEGS-SYLGQPLPFSLTTLIWI---EVIVIGYIEYQRNAE------LDPVKRLYPGGYFDPLGLASDPGKLENLQLAEIKHARLAMVAFLIFGIQA 825
            RE E+IH RWAMLG LG +  E  A  GV      W  AG     EG   YLG P      +++ I   +V+++G +E  R A       +DP   LYPGG FDPLGLA DP     L++ E K+ RLAM +   F IQA
Sbjct:   97 RELEVIHCRWAMLGALGCVFPELFARNGVKFGEAVWLKAGSQIFSEGGLDYLGNPSLVHAQSILAIWACQVLLMGAVEGYRVAGGPLGVVVDP---LYPGGSFDPLGLAEDPEAFAELKVKETKNGRLAMFSMFGFFIQA 233          
BLAST of CK934401 vs. ExPASy Swiss-Prot
Match: CB23_NICPL (Chlorophyll a-b binding protein C, chloroplastic OS=Nicotiana plumbaginifolia GN=CABC PE=3 SV=1)

HSP 1 Score: 80.1073 bits (196), Expect = 1.686e-14
Identity = 55/137 (40.15%), Postives = 75/137 (54.74%), Query Frame = 1
Query:  457 RECELIHGRWAMLGTLGAIAVEALT--GVAWQDA------GKVELVEGSSYLGQPLPFSLTTLIWI---EVIVIGYIEYQRNAEL---DPVKRLYPGGYFDPLGLASDPGKLENLQLAEIKHARLAMVAFLIFGIQA 825
            RE E+IH RWAMLG LG +  E L   GV + +A       ++    G  YLG P      +++ I   +V+++G +E  R A     + V  LYPGG FDPLGLA DP     L++ EIK+ RLAM +   F +QA
Sbjct:   97 RELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKGGSQIFSQGGLDYLGNPSLVHAQSILAIWACQVVLMGAVEGYRVAGEPLGEVVDPLYPGGSFDPLGLAEDPEAFAELKVKEIKNGRLAMFSMFGFFVQA 233          
BLAST of CK934401 vs. ExPASy Swiss-Prot
Match: CB21_PETSP (Chlorophyll a-b binding protein 13, chloroplastic OS=Petunia sp. GN=CAB13 PE=3 SV=1)

HSP 1 Score: 79.7221 bits (195), Expect = 2.202e-14
Identity = 57/140 (40.71%), Postives = 74/140 (52.86%), Query Frame = 1
Query:  457 RECELIHGRWAMLGTLGAIAVE--ALTGV-----AWQDAGKVELVEGS-SYLGQPLPFSLTTLIWI---EVIVIGYIEYQRNAE------LDPVKRLYPGGYFDPLGLASDPGKLENLQLAEIKHARLAMVAFLIFGIQA 825
            R+ E+IH RW MLG LG +  E  A  GV      W  AG     EG   YLG P      +++ I   +V+++G +E  R A       +DP   LYPGG FDPLGLA DP     L++ EIK+ RLAM +   F +QA
Sbjct:   96 RKLEVIHCRWTMLGALGCVFPELFARNGVKFGEAVWFKAGSQIFKEGGLDYLGNPSLVHAQSILAIWACQVVLMGAVEGYRVAGGPLGEVIDP---LYPGGSFDPLGLADDPEAFAELEVKEIKNGRLAMFSMFGFFVQA 232          
BLAST of CK934401 vs. ExPASy Swiss-Prot
Match: CB21_PEA (Chlorophyll a-b binding protein AB96 (Fragment) OS=Pisum sativum GN=AB96 PE=1 SV=1)

HSP 1 Score: 77.7962 bits (190), Expect = 8.366e-14
Identity = 56/137 (40.88%), Postives = 73/137 (53.28%), Query Frame = 1
Query:  457 RECELIHGRWAMLGTLGAIAVEALT--GV-----AWQDAGKVELVEGS-SYLGQPLPFSLTTLIWI---EVIVIGYIEYQRNAEL---DPVKRLYPGGYFDPLGLASDPGKLENLQLAEIKHARLAMVAFLIFGIQA 825
            RE E+IH RWAMLG LG +  E L+  GV      W  AG     EG   YLG P      +++ I   +VI++G +E  R A     + V  LYPGG FDPLGLA  P     L++ E+K+ RLAM +   F + A
Sbjct:   58 RELEVIHSRWAMLGALGCVFPELLSRNGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWATQVILMGAVEGYRIAGGPLGEVVDPLYPGGSFDPLGLAEVPEAFAELKVKELKNGRLAMFSMFGFFVPA 194          
BLAST of CK934401 vs. ExPASy Swiss-Prot
Match: CB21_PINTH (Chlorophyll a-b binding protein type I, chloroplastic OS=Pinus thunbergii PE=2 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 1.093e-13
Identity = 56/140 (40.00%), Postives = 70/140 (50.00%), Query Frame = 1
Query:  457 RECELIHGRWAMLGTLGAIAVEALTG-------VAWQDAGKVELVEGS-SYLGQPLPFSLTTLIWI---EVIVIGYIEYQR------NAELDPVKRLYPGGYFDPLGLASDPGKLENLQLAEIKHARLAMVAFLIFGIQA 825
            RE E+IH RWAMLG LG +  E L           W  AG     EG   Y G P      +++ I   +V+++G IE  R         LDP   L PGG FDPLGLA DP     L++ EIK+ RLAM +   F +QA
Sbjct:   96 RELEVIHCRWAMLGALGCVFPELLAKNGLKFGEAVWFKAGAQIFSEGGLDYAGNPNLIHAQSILAIWACQVVLMGLIEGYRVGGGTLGEGLDP---LLPGGAFDPLGLADDPEACAELKVKEIKNGRLAMFSMFGFFVQA 232          
The following BLAST results are available for this feature:
BLAST of CK934401 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 67
Match NameE-valueIdentityDescription
CB25_TOBAC1.291e-1441.61Chlorophyll a-b binding protein 50, chloroplastic ... [more]
CB23_SOLLC1.291e-1441.01Chlorophyll a-b binding protein 13, chloroplastic ... [more]
CB22_PETSP1.291e-1442.14Chlorophyll a-b binding protein 22L, chloroplastic... [more]
CB23_NICPL1.686e-1440.15Chlorophyll a-b binding protein C, chloroplastic O... [more]
CB21_PETSP2.202e-1440.71Chlorophyll a-b binding protein 13, chloroplastic ... [more]
CB21_PEA8.366e-1440.88Chlorophyll a-b binding protein AB96 (Fragment) OS... [more]
CB21_PINTH1.093e-1340.00Chlorophyll a-b binding protein type I, chloroplas... [more]

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Properties
Property NameValue
Genbank descriptionCGF1004259_E12 Developing fruit peel at 38 DAFB Citrus sinensis cDNA clone P38DAB10004_IIF_E12 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK934401 ID=CK934401; Name=CK934401; organism=Citrus sinensis; type=EST; length=832bp
GCGGGAGTACACTGGAAGTCACATATTCTATCCNNNATCNNNTTATCAGC
GATGGCCACCACCACTACAGCAGCAGCATCACATTTCTTCGGGACGAGAA
TTCATGGGGCTGTCGTGAAACAAAGATCGGGAAAATTCCAAGCCAGGTTC
AGCTTTCGCAAGAAAAAATCCCCACCAGCCAAAAAGGCCAGGCCTACACG
AGACTCCGACCGGCTTGTCTGGTTCCCCGGCGCCACCCCGCCGGAATGGC
TCGACGGGACAATGGTGGGTGACCGTGGGTTCGACCCGTTGGGGCTGGGG
AAGCCAACAGAGTACTTGCAGTATGATTTTGACTCGTTGGATCAGAACTT
GGCCAAGAACGATGTCGGCGAGCTTCTCGGAGTGATTACTGATTCCGGGG
AGCTGCAGCCGACGCCGCTGCAGCCGTACACGGAGGTATTTGGGCTGCAG
AGGTTTAGAGAATGTGAGCTGATTCATGGAAGGTGGGCCATGTTGGGTAC
CCTTGGCGCCATTGCTGTTGAAGCTCTCACTGGTGTCGCATGGCAGGATG
CTGGAAAGGTGGAGCTGGTGGAGGGTTCATCTTATCTTGGCCAACCACTT
CCATTTTCATTAACAACATTGATTTGGATTGAAGTTATTGTGATTGGGTA
CATAGAATATCAAAGAAATGCAGAGCTTGATCCAGTGAAAAGACTATACC
CTGGTGGGTATTTTGATCCTCTTGGCTTGGCCTCAGATCCTGGGAAGCTT
GAAAATCTTCAATTGGCTGAAATCAAGCACGCTCGTCTAGCAATGGTAGC
ATTTTTAATCTTTGGAATCCAGGCTGCTTTTA
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