CK935354
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CK935354 vs. ExPASy Swiss-Prot
Match: HMG3M_HUMAN (Putative high mobility group protein B3-like protein OS=Homo sapiens PE=5 SV=1) HSP 1 Score: 82.0333 bits (201), Expect = 4.745e-15 Identity = 48/127 (37.80%), Postives = 69/127 (54.33%), Query Frame = 3 Query: 165 SKADAVGTDSKLKSKG-ARAGKRTAKPEAAKDPNKPKRPPSAFFVFMEEFRKQFKEAHPNNKSVATVGKAAGEKWKSMSDDEKAPFVEKAEKRKSDYNKNMQDY-NKQLADGVNAAEENESDKSKSE 539 +KAD V D ++K G A+ GK+ KDPN PKRPPS FF+F EF + K +P + V K GE WK+++D EK P++ +A K K Y K++ Y +K +DG + K + E Sbjct: 64 AKADKVHYDQEIKDYGPAKGGKK-------KDPNAPKRPPSGFFLFCSEFCPKSKSTNP-GIPIGDVAKKLGEMWKNLNDSEKQPYITQAAKLKEKYEKDVAVYKSKGKSDGAKGPAKVAQKKVEEE 182
BLAST of CK935354 vs. ExPASy Swiss-Prot
Match: HMGB1_PAPAN (High mobility group protein B1 OS=Papio anubis GN=HMGB1 PE=3 SV=1) HSP 1 Score: 80.1073 bits (196), Expect = 1.803e-14 Identity = 47/130 (36.15%), Postives = 69/130 (53.08%), Query Frame = 3 Query: 165 SKADAVGTDSKLKSKGARAGKRTAKPEAAKDPNKPKRPPSAFFVFMEEFRKQFKEAHPNNKSVATVGKAAGEKWKSMSDDEKAPFVEKAEKRKSDYNKNMQDYNKQ-----LADGVNAAEENESDKSKSE 539 +KAD + ++K+ G+ K KDPN PKRPPSAFF+F E+R + K HP S+ V K GE W + + D+K P+ +KA K K Y K++ Y + GV AE+++ K + E Sbjct: 64 AKADKARYEREMKTYIPPKGETKKK---FKDPNAPKRPPSAFFLFCSEYRPKIKGEHP-GLSIGDVAKKLGEMWNNTAADDKQPYEKKAAKLKEKYEKDIAAYRAKGKPDAAKKGVVKAEKSKKKKEEEE 189
BLAST of CK935354 vs. ExPASy Swiss-Prot
Match: HMGB1_MACFA (High mobility group protein B1 OS=Macaca fascicularis GN=HMGB1 PE=2 SV=3) HSP 1 Score: 80.1073 bits (196), Expect = 1.803e-14 Identity = 47/130 (36.15%), Postives = 69/130 (53.08%), Query Frame = 3 Query: 165 SKADAVGTDSKLKSKGARAGKRTAKPEAAKDPNKPKRPPSAFFVFMEEFRKQFKEAHPNNKSVATVGKAAGEKWKSMSDDEKAPFVEKAEKRKSDYNKNMQDYNKQ-----LADGVNAAEENESDKSKSE 539 +KAD + ++K+ G+ K KDPN PKRPPSAFF+F E+R + K HP S+ V K GE W + + D+K P+ +KA K K Y K++ Y + GV AE+++ K + E Sbjct: 64 AKADKARYEREMKTYIPPKGETKKK---FKDPNAPKRPPSAFFLFCSEYRPKIKGEHP-GLSIGDVAKKLGEMWNNTAADDKQPYEKKAAKLKEKYEKDIAAYRAKGKPDAAKKGVVKAEKSKKKKEEEE 189
BLAST of CK935354 vs. ExPASy Swiss-Prot
Match: HMGB1_HUMAN (High mobility group protein B1 OS=Homo sapiens GN=HMGB1 PE=1 SV=3) HSP 1 Score: 80.1073 bits (196), Expect = 1.803e-14 Identity = 47/130 (36.15%), Postives = 69/130 (53.08%), Query Frame = 3 Query: 165 SKADAVGTDSKLKSKGARAGKRTAKPEAAKDPNKPKRPPSAFFVFMEEFRKQFKEAHPNNKSVATVGKAAGEKWKSMSDDEKAPFVEKAEKRKSDYNKNMQDYNKQ-----LADGVNAAEENESDKSKSE 539 +KAD + ++K+ G+ K KDPN PKRPPSAFF+F E+R + K HP S+ V K GE W + + D+K P+ +KA K K Y K++ Y + GV AE+++ K + E Sbjct: 64 AKADKARYEREMKTYIPPKGETKKK---FKDPNAPKRPPSAFFLFCSEYRPKIKGEHP-GLSIGDVAKKLGEMWNNTAADDKQPYEKKAAKLKEKYEKDIAAYRAKGKPDAAKKGVVKAEKSKKKKEEEE 189
BLAST of CK935354 vs. ExPASy Swiss-Prot
Match: HMGB1_HORSE (High mobility group protein B1 OS=Equus caballus GN=HMGB1 PE=2 SV=3) HSP 1 Score: 80.1073 bits (196), Expect = 1.803e-14 Identity = 47/130 (36.15%), Postives = 69/130 (53.08%), Query Frame = 3 Query: 165 SKADAVGTDSKLKSKGARAGKRTAKPEAAKDPNKPKRPPSAFFVFMEEFRKQFKEAHPNNKSVATVGKAAGEKWKSMSDDEKAPFVEKAEKRKSDYNKNMQDYNKQ-----LADGVNAAEENESDKSKSE 539 +KAD + ++K+ G+ K KDPN PKRPPSAFF+F E+R + K HP S+ V K GE W + + D+K P+ +KA K K Y K++ Y + GV AE+++ K + E Sbjct: 64 AKADKARYEREMKTYIPPKGETKKK---FKDPNAPKRPPSAFFLFCSEYRPKIKGEHP-GLSIGDVAKKLGEMWNNTAADDKQPYEKKAAKLKEKYEKDIAAYRAKGKPDAAKKGVVKAEKSKKKKEEEE 189
BLAST of CK935354 vs. ExPASy Swiss-Prot
Match: HMGB1_CANFA (High mobility group protein B1 OS=Canis familiaris GN=HMGB1 PE=2 SV=3) HSP 1 Score: 80.1073 bits (196), Expect = 1.803e-14 Identity = 47/130 (36.15%), Postives = 69/130 (53.08%), Query Frame = 3 Query: 165 SKADAVGTDSKLKSKGARAGKRTAKPEAAKDPNKPKRPPSAFFVFMEEFRKQFKEAHPNNKSVATVGKAAGEKWKSMSDDEKAPFVEKAEKRKSDYNKNMQDYNKQ-----LADGVNAAEENESDKSKSE 539 +KAD + ++K+ G+ K KDPN PKRPPSAFF+F E+R + K HP S+ V K GE W + + D+K P+ +KA K K Y K++ Y + GV AE+++ K + E Sbjct: 64 AKADKARYEREMKTYIPPKGETKKK---FKDPNAPKRPPSAFFLFCSEYRPKIKGEHP-GLSIGDVAKKLGEMWNNTAADDKQPYEKKAAKLKEKYEKDIAAYRAKGKPDAAKKGVVKAEKSKKKKEEEE 189
BLAST of CK935354 vs. ExPASy Swiss-Prot
Match: HMGB1_CALMO (High mobility group protein B1 OS=Callicebus moloch GN=HMGB1 PE=3 SV=1) HSP 1 Score: 80.1073 bits (196), Expect = 1.803e-14 Identity = 47/130 (36.15%), Postives = 69/130 (53.08%), Query Frame = 3 Query: 165 SKADAVGTDSKLKSKGARAGKRTAKPEAAKDPNKPKRPPSAFFVFMEEFRKQFKEAHPNNKSVATVGKAAGEKWKSMSDDEKAPFVEKAEKRKSDYNKNMQDYNKQ-----LADGVNAAEENESDKSKSE 539 +KAD + ++K+ G+ K KDPN PKRPPSAFF+F E+R + K HP S+ V K GE W + + D+K P+ +KA K K Y K++ Y + GV AE+++ K + E Sbjct: 64 AKADKARYEREMKTYIPPKGETKKK---FKDPNAPKRPPSAFFLFCSEYRPKIKGEHP-GLSIGDVAKKLGEMWNNTAADDKQPYEKKAAKLKEKYEKDIAAYRAKGKPDAAKKGVVKAEKSKKKKEEEE 189
BLAST of CK935354 vs. ExPASy Swiss-Prot
Match: HMGB1_CALJA (High mobility group protein B1 OS=Callithrix jacchus GN=HMGB1 PE=3 SV=1) HSP 1 Score: 80.1073 bits (196), Expect = 1.803e-14 Identity = 47/130 (36.15%), Postives = 69/130 (53.08%), Query Frame = 3 Query: 165 SKADAVGTDSKLKSKGARAGKRTAKPEAAKDPNKPKRPPSAFFVFMEEFRKQFKEAHPNNKSVATVGKAAGEKWKSMSDDEKAPFVEKAEKRKSDYNKNMQDYNKQ-----LADGVNAAEENESDKSKSE 539 +KAD + ++K+ G+ K KDPN PKRPPSAFF+F E+R + K HP S+ V K GE W + + D+K P+ +KA K K Y K++ Y + GV AE+++ K + E Sbjct: 64 AKADKARYEREMKTYIPPKGETKKK---FKDPNAPKRPPSAFFLFCSEYRPKIKGEHP-GLSIGDVAKKLGEMWNNTAADDKQPYEKKAAKLKEKYEKDIAAYRAKGKPDAAKKGVVKAEKSKKKKEEEE 189
BLAST of CK935354 vs. ExPASy Swiss-Prot
Match: HMGB1_BOVIN (High mobility group protein B1 OS=Bos taurus GN=HMGB1 PE=1 SV=3) HSP 1 Score: 80.1073 bits (196), Expect = 1.803e-14 Identity = 47/130 (36.15%), Postives = 69/130 (53.08%), Query Frame = 3 Query: 165 SKADAVGTDSKLKSKGARAGKRTAKPEAAKDPNKPKRPPSAFFVFMEEFRKQFKEAHPNNKSVATVGKAAGEKWKSMSDDEKAPFVEKAEKRKSDYNKNMQDYNKQ-----LADGVNAAEENESDKSKSE 539 +KAD + ++K+ G+ K KDPN PKRPPSAFF+F E+R + K HP S+ V K GE W + + D+K P+ +KA K K Y K++ Y + GV AE+++ K + E Sbjct: 64 AKADKARYEREMKTYIPPKGETKKK---FKDPNAPKRPPSAFFLFCSEYRPKIKGEHP-GLSIGDVAKKLGEMWNNTAADDKQPYEKKAAKLKEKYEKDIAAYRAKGKPDAAKKGVVKAEKSKKKKEEEE 189
BLAST of CK935354 vs. ExPASy Swiss-Prot
Match: HMGB1_PIG (High mobility group protein B1 OS=Sus scrofa GN=HMGB1 PE=2 SV=3) HSP 1 Score: 79.7221 bits (195), Expect = 2.355e-14 Identity = 47/130 (36.15%), Postives = 69/130 (53.08%), Query Frame = 3 Query: 165 SKADAVGTDSKLKSKGARAGKRTAKPEAAKDPNKPKRPPSAFFVFMEEFRKQFKEAHPNNKSVATVGKAAGEKWKSMSDDEKAPFVEKAEKRKSDYNKNMQDYNKQ-----LADGVNAAEENESDKSKSE 539 +KAD + ++K+ G+ K KDPN PKRPPSAFF+F E+R + K HP S+ V K GE W + + D+K P+ +KA K K Y K++ Y + GV AE+++ K + E Sbjct: 64 AKADKARYEREMKTYIPPKGETKKK---FKDPNAPKRPPSAFFLFCSEYRPKIKGEHP-GLSIGDVAKKLGEMWNNTAADDKHPYEKKAAKLKEKYEKDIAAYRAKGKPDAAKKGVVKAEKSKKKKEEEE 189 The following BLAST results are available for this feature:
BLAST of CK935354 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 46
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Sequences
The
following sequences are available for this feature:
EST sequence >CK935354 ID=CK935354; Name=CK935354; organism=Citrus sinensis; type=EST; length=873bpback to top |