CK935354
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CK935354 vs. ExPASy Swiss-Prot
Match: HMGL_SOYBN (HMG1/2-like protein OS=Glycine max PE=2 SV=1) HSP 1 Score: 166.392 bits (420), Expect = 1.913e-40 Identity = 83/136 (61.03%), Postives = 100/136 (73.53%), Query Frame = 3 Query: 150 MKGGRSKADAVGTDSKL----KSKGARAGKRTAKPEAAKDPNKPKRPPSAFFVFMEEFRKQFKEAHPNNKSVATVGKAAGEKWKSMSDDEKAPFVEKAEKRKSDYNKNMQDYNKQLADGVNAAEENESDKSKSEVN 545 MKGG+SK ++ D KL K +A K K +AAKDPNKPKRPPSAFFVFMEEFRK F + HP NK+V+ VGKAAG KWK+MSD EKAP+V K+EKRK +Y KNM+ YNK+ A+G +E ES+KS SEVN Sbjct: 1 MKGGKSKTESKRADPKLAVNKKGAATKARKPAGKGKAAKDPNKPKRPPSAFFVFMEEFRKVFNKEHPENKAVSAVGKAAGAKWKTMSDAEKAPYVAKSEKRKVEYEKNMRAYNKKQAEGPTGGDEEESEKSVSEVN 136
BLAST of CK935354 vs. ExPASy Swiss-Prot
Match: HMGL_IPONI (HMG1/2-like protein OS=Ipomoea nil PE=2 SV=1) HSP 1 Score: 165.236 bits (417), Expect = 4.262e-40 Identity = 86/132 (65.15%), Postives = 101/132 (76.52%), Query Frame = 3 Query: 150 MKGGRSKADAVGTDSKLKSKGARAGKRTAKPEAAKDPNKPKRPPSAFFVFMEEFRKQFKEAHPNNKSVATVGKAAGEKWKSMSDDEKAPFVEKAEKRKSDYNKNMQDYNKQLADGVNAAEENESDKSKSEVN 545 MKGG+SKA + D+KL K A + K +A KDPNKPKRPPSAFFVFME+FRK +KE HPNNKSVA VGKA G+KWK ++ EKAPF+ KAEKRK +Y KN+Q YNK+ A G AAEE ESDKS+SEVN Sbjct: 1 MKGGKSKAKS---DNKLAVKKQAADTKKTK-KAVKDPNKPKRPPSAFFVFMEDFRKTYKEKHPNNKSVAVVGKAGGDKWKQLTAAEKAPFISKAEKRKQEYEKNLQAYNKKQAAG--AAEEEESDKSRSEVN 126
BLAST of CK935354 vs. ExPASy Swiss-Prot
Match: HMGL_VICFA (HMG1/2-like protein OS=Vicia faba PE=2 SV=1) HSP 1 Score: 153.68 bits (387), Expect = 1.283e-36 Identity = 79/137 (57.66%), Postives = 102/137 (74.45%), Query Frame = 3 Query: 150 MKGGRSKADAVGTDSKL--KSKGARA---GKRTAKPEAAKDPNKPKRPPSAFFVFMEEFRKQFKEAHPNNKSVATVGKAAGEKWKSMSDDEKAPFVEKAEKRKSDYNKNMQDYNKQLADGVNAAEENESDKSKSEVN 545 MKGG+SK ++ ++KL KGA A GK+ AK + KDPNKPKRPPSAFFVFM +FR+Q+K+ HPNNKSVA VGKA GE+WKS+S++EKAP+V++A K+K +Y +Q YNK+L +E SDKSKSEVN Sbjct: 1 MKGGKSKGESKKAETKLAVNKKGAAATKGGKKPAKGKEPKDPNKPKRPPSAFFVFMADFREQYKKDHPNNKSVAAVGKACGEEWKSLSEEEKAPYVDRALKKKEEYEITLQAYNKKLE---GKDDEEGSDKSKSEVN 134
BLAST of CK935354 vs. ExPASy Swiss-Prot
Match: MNB1B_MAIZE (DNA-binding protein MNB1B OS=Zea mays GN=MNB1B PE=1 SV=1) HSP 1 Score: 149.443 bits (376), Expect = 2.420e-35 Identity = 82/142 (57.75%), Postives = 98/142 (69.01%), Query Frame = 3 Query: 150 MKGGRSKADAVGTDSKL--KSKGARAGKRTAKPEAAKDPNKPKRPPSAFFVFMEEFRKQFKEAHPNNKSVATVGKAAGEKWKSMSDDEKAPFVEKAEKRKSDYNKNMQDYNKQLADGVNAA--------EENESDKSKSEVN 545 MKG +SK A D+KL KSKGA + K +A KDPNKPKR PSAFFVFMEEFRK+FKE +P NKSVA VGKAAG++WKS+S+ +KAP+V KA K K +YNK + YNK + A +E ESDKSKSEVN Sbjct: 1 MKGAKSKG-AAKADAKLAVKSKGAEKPAKGRKGKAGKDPNKPKRAPSAFFVFMEEFRKEFKEKNPKNKSVAAVGKAAGDRWKSLSESDKAPYVAKANKLKLEYNKAIAAYNKGESTAAKKAPAKEEEEEDEEESDKSKSEVN 141
BLAST of CK935354 vs. ExPASy Swiss-Prot
Match: HMGL_WHEAT (HMG1/2-like protein OS=Triticum aestivum PE=2 SV=1) HSP 1 Score: 143.665 bits (361), Expect = 1.328e-33 Identity = 81/146 (55.48%), Postives = 98/146 (67.12%), Query Frame = 3 Query: 150 MKGGRSKADAVGTDSKL--KSKGA-RAGKRTAKPEAAKDPNKPKRPPSAFFVFMEEFRKQFKEAHPNNKSVATVGKAAGEKWKSMSDDEKAPFVEKAEKRKSDYNKNMQDYN-----------KQLADGVNAAEENESDKSKSEVN 545 MKG +SK A D+KL KSKGA + + K +A KDPNKPKR PSAFFVFM EFR++FK+ +P NKSVA VGKAAGE+WKS+S+ EKAP+V KA K K +YNK + YN K A V +E ESDKSKSE+N Sbjct: 1 MKGAKSKG-AAKADAKLAVKSKGAEKPAAKGKKGKAGKDPNKPKRAPSAFFVFMGEFREEFKQKNPKNKSVAAVGKAAGERWKSLSESEKAPYVAKANKLKGEYNKAIAAYNKGESAAAAAPKKAAAKEVEEEDEEESDKSKSEIN 145
BLAST of CK935354 vs. ExPASy Swiss-Prot
Match: HMGB3_BOVIN (High mobility group protein B3 OS=Bos taurus GN=HMGB3 PE=2 SV=2) HSP 1 Score: 96.2857 bits (238), Expect = 2.431e-19 Identity = 57/136 (41.91%), Postives = 76/136 (55.88%), Query Frame = 3 Query: 165 SKADAVGTDSKLKSKG-ARAGKRTAKPEAAKDPNKPKRPPSAFFVFMEEFRKQFKEAHPNNKSVATVGKAAGEKWKSMSDDEKAPFVEKAEKRKSDYNKNMQDY-NKQLADGVNAA---------EENESDKSKSE 539 +KAD V D ++K G A+ GK+ KDPN PKRPPS FF+F EFR + K A+P S+ V K GE W ++SD EK P++ KA K K Y K++ DY +K DG A EE+E D+ + E Sbjct: 64 AKADKVRYDREMKDYGPAKGGKKK------KDPNAPKRPPSGFFLFCSEFRPKIKSANPGI-SIGDVAKKLGEMWNNLSDSEKQPYINKAAKLKEKYEKDVADYKSKGKFDGAKGAAKVARKKVEEEDEEDEEEEE 192
BLAST of CK935354 vs. ExPASy Swiss-Prot
Match: HMGB3_MOUSE (High mobility group protein B3 OS=Mus musculus GN=Hmgb3 PE=2 SV=3) HSP 1 Score: 92.0485 bits (227), Expect = 4.585e-18 Identity = 55/135 (40.74%), Postives = 74/135 (54.81%), Query Frame = 3 Query: 165 SKADAVGTDSKLKSKG-ARAGKRTAKPEAAKDPNKPKRPPSAFFVFMEEFRKQFKEAHPNNKSVATVGKAAGEKWKSMSDDEKAPFVEKAEKRKSDYNKNMQDY-NKQLADGVNA--------AEENESDKSKSE 539 +KAD V D ++K G A+ GK+ KDPN PKRPPS FF+F EFR + K +P S+ V K GE W ++SD+EK P+V KA K K Y K++ DY +K DG EE E ++ + E Sbjct: 64 AKADKVRYDREMKDYGPAKGGKKK------KDPNAPKRPPSGFFLFCSEFRPKIKSTNPGI-SIGDVAKKLGEMWNNLSDNEKQPYVTKAAKLKEKYEKDVADYKSKGKFDGAKGPAKVARKKVEEEEEEEEEEE 191
BLAST of CK935354 vs. ExPASy Swiss-Prot
Match: HMGB3_CHICK (High mobility group protein B3 OS=Gallus gallus GN=HMGB3 PE=2 SV=2) HSP 1 Score: 91.6633 bits (226), Expect = 5.988e-18 Identity = 54/127 (42.52%), Postives = 70/127 (55.12%), Query Frame = 3 Query: 165 SKADAVGTDSKLKSKG-ARAGKRTAKPEAAKDPNKPKRPPSAFFVFMEEFRKQFKEAHPNNKSVATVGKAAGEKWKSMSDDEKAPFVEKAEKRKSDYNKNMQDY-NKQLADGVNAAEENESDKSKSE 539 +KAD V D ++K G A+ GK+ KDPN PKRPPSAFF+F EFR + K +P S+ V K GE W ++SD EK P+ KA K K Y K++ DY +K DG A + K E Sbjct: 64 AKADKVRYDREMKDYGPAKGGKKK------KDPNAPKRPPSAFFLFCSEFRPKIKSTNP-GISIGDVAKKLGEMWNNLSDGEKQPYNNKAAKLKEKYEKDVADYKSKGKFDGAKGAATKAARKKVEE 183
BLAST of CK935354 vs. ExPASy Swiss-Prot
Match: HMGB1_CHICK (High mobility group protein B1 OS=Gallus gallus GN=HMGB1 PE=2 SV=2) HSP 1 Score: 90.1225 bits (222), Expect = 1.742e-17 Identity = 53/127 (41.73%), Postives = 69/127 (54.33%), Query Frame = 3 Query: 165 SKADAVGTDSKLKSKG-ARAGKRTAKPEAAKDPNKPKRPPSAFFVFMEEFRKQFKEAHPNNKSVATVGKAAGEKWKSMSDDEKAPFVEKAEKRKSDYNKNMQDY-NKQLADGVNAAEENESDKSKSE 539 +KAD V D ++K G A+ GK+ KDPN PKRPPS FF+F EFR + K +P S+ V K GE W ++SD EK P+ KA K K Y K++ DY +K DG A + K E Sbjct: 63 AKADKVRYDREMKDYGPAKGGKKK------KDPNAPKRPPSGFFLFCSEFRPKIKSTNP-GISIGDVAKKLGEMWNNLSDGEKQPYNNKAAKLKEKYEKDVADYKSKGKFDGAKGAATKAARKKVEE 182
BLAST of CK935354 vs. ExPASy Swiss-Prot
Match: HMGB3_HUMAN (High mobility group protein B3 OS=Homo sapiens GN=HMGB3 PE=1 SV=4) HSP 1 Score: 89.7373 bits (221), Expect = 2.275e-17 Identity = 53/136 (38.97%), Postives = 74/136 (54.41%), Query Frame = 3 Query: 165 SKADAVGTDSKLKSKG-ARAGKRTAKPEAAKDPNKPKRPPSAFFVFMEEFRKQFKEAHPNNKSVATVGKAAGEKWKSMSDDEKAPFVEKAEKRKSDYNKNMQDY-NKQLADGV---------NAAEENESDKSKSE 539 +KAD V D ++K G A+ GK+ KDPN PKRPPS FF+F EFR + K +P S+ V K GE W +++D EK P++ KA K K Y K++ DY +K DG EE+E ++ + E Sbjct: 64 AKADKVRYDREMKDYGPAKGGKKK------KDPNAPKRPPSGFFLFCSEFRPKIKSTNPGI-SIGDVAKKLGEMWNNLNDSEKQPYITKAAKLKEKYEKDVADYKSKGKFDGAKGPAKVARKKVEEEDEEEEEEEE 192 The following BLAST results are available for this feature:
BLAST of CK935354 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 46
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Sequences
The
following sequences are available for this feature:
EST sequence >CK935354 ID=CK935354; Name=CK935354; organism=Citrus sinensis; type=EST; length=873bpback to top |