CK935354

Overview
NameCK935354
Unique NameCK935354
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length873
Libraries
Library NameType
Developing fruit 24 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CK935354 vs. ExPASy Swiss-Prot
Match: HMG3M_HUMAN (Putative high mobility group protein B3-like protein OS=Homo sapiens PE=5 SV=1)

HSP 1 Score: 82.0333 bits (201), Expect = 4.745e-15
Identity = 48/127 (37.80%), Postives = 69/127 (54.33%), Query Frame = 3
Query:  165 SKADAVGTDSKLKSKG-ARAGKRTAKPEAAKDPNKPKRPPSAFFVFMEEFRKQFKEAHPNNKSVATVGKAAGEKWKSMSDDEKAPFVEKAEKRKSDYNKNMQDY-NKQLADGVNAAEENESDKSKSE 539
            +KAD V  D ++K  G A+ GK+       KDPN PKRPPS FF+F  EF  + K  +P    +  V K  GE WK+++D EK P++ +A K K  Y K++  Y +K  +DG     +    K + E
Sbjct:   64 AKADKVHYDQEIKDYGPAKGGKK-------KDPNAPKRPPSGFFLFCSEFCPKSKSTNP-GIPIGDVAKKLGEMWKNLNDSEKQPYITQAAKLKEKYEKDVAVYKSKGKSDGAKGPAKVAQKKVEEE 182          
BLAST of CK935354 vs. ExPASy Swiss-Prot
Match: HMGB1_PAPAN (High mobility group protein B1 OS=Papio anubis GN=HMGB1 PE=3 SV=1)

HSP 1 Score: 80.1073 bits (196), Expect = 1.803e-14
Identity = 47/130 (36.15%), Postives = 69/130 (53.08%), Query Frame = 3
Query:  165 SKADAVGTDSKLKSKGARAGKRTAKPEAAKDPNKPKRPPSAFFVFMEEFRKQFKEAHPNNKSVATVGKAAGEKWKSMSDDEKAPFVEKAEKRKSDYNKNMQDYNKQ-----LADGVNAAEENESDKSKSE 539
            +KAD    + ++K+     G+   K    KDPN PKRPPSAFF+F  E+R + K  HP   S+  V K  GE W + + D+K P+ +KA K K  Y K++  Y  +        GV  AE+++  K + E
Sbjct:   64 AKADKARYEREMKTYIPPKGETKKK---FKDPNAPKRPPSAFFLFCSEYRPKIKGEHP-GLSIGDVAKKLGEMWNNTAADDKQPYEKKAAKLKEKYEKDIAAYRAKGKPDAAKKGVVKAEKSKKKKEEEE 189          
BLAST of CK935354 vs. ExPASy Swiss-Prot
Match: HMGB1_MACFA (High mobility group protein B1 OS=Macaca fascicularis GN=HMGB1 PE=2 SV=3)

HSP 1 Score: 80.1073 bits (196), Expect = 1.803e-14
Identity = 47/130 (36.15%), Postives = 69/130 (53.08%), Query Frame = 3
Query:  165 SKADAVGTDSKLKSKGARAGKRTAKPEAAKDPNKPKRPPSAFFVFMEEFRKQFKEAHPNNKSVATVGKAAGEKWKSMSDDEKAPFVEKAEKRKSDYNKNMQDYNKQ-----LADGVNAAEENESDKSKSE 539
            +KAD    + ++K+     G+   K    KDPN PKRPPSAFF+F  E+R + K  HP   S+  V K  GE W + + D+K P+ +KA K K  Y K++  Y  +        GV  AE+++  K + E
Sbjct:   64 AKADKARYEREMKTYIPPKGETKKK---FKDPNAPKRPPSAFFLFCSEYRPKIKGEHP-GLSIGDVAKKLGEMWNNTAADDKQPYEKKAAKLKEKYEKDIAAYRAKGKPDAAKKGVVKAEKSKKKKEEEE 189          
BLAST of CK935354 vs. ExPASy Swiss-Prot
Match: HMGB1_HUMAN (High mobility group protein B1 OS=Homo sapiens GN=HMGB1 PE=1 SV=3)

HSP 1 Score: 80.1073 bits (196), Expect = 1.803e-14
Identity = 47/130 (36.15%), Postives = 69/130 (53.08%), Query Frame = 3
Query:  165 SKADAVGTDSKLKSKGARAGKRTAKPEAAKDPNKPKRPPSAFFVFMEEFRKQFKEAHPNNKSVATVGKAAGEKWKSMSDDEKAPFVEKAEKRKSDYNKNMQDYNKQ-----LADGVNAAEENESDKSKSE 539
            +KAD    + ++K+     G+   K    KDPN PKRPPSAFF+F  E+R + K  HP   S+  V K  GE W + + D+K P+ +KA K K  Y K++  Y  +        GV  AE+++  K + E
Sbjct:   64 AKADKARYEREMKTYIPPKGETKKK---FKDPNAPKRPPSAFFLFCSEYRPKIKGEHP-GLSIGDVAKKLGEMWNNTAADDKQPYEKKAAKLKEKYEKDIAAYRAKGKPDAAKKGVVKAEKSKKKKEEEE 189          
BLAST of CK935354 vs. ExPASy Swiss-Prot
Match: HMGB1_HORSE (High mobility group protein B1 OS=Equus caballus GN=HMGB1 PE=2 SV=3)

HSP 1 Score: 80.1073 bits (196), Expect = 1.803e-14
Identity = 47/130 (36.15%), Postives = 69/130 (53.08%), Query Frame = 3
Query:  165 SKADAVGTDSKLKSKGARAGKRTAKPEAAKDPNKPKRPPSAFFVFMEEFRKQFKEAHPNNKSVATVGKAAGEKWKSMSDDEKAPFVEKAEKRKSDYNKNMQDYNKQ-----LADGVNAAEENESDKSKSE 539
            +KAD    + ++K+     G+   K    KDPN PKRPPSAFF+F  E+R + K  HP   S+  V K  GE W + + D+K P+ +KA K K  Y K++  Y  +        GV  AE+++  K + E
Sbjct:   64 AKADKARYEREMKTYIPPKGETKKK---FKDPNAPKRPPSAFFLFCSEYRPKIKGEHP-GLSIGDVAKKLGEMWNNTAADDKQPYEKKAAKLKEKYEKDIAAYRAKGKPDAAKKGVVKAEKSKKKKEEEE 189          
BLAST of CK935354 vs. ExPASy Swiss-Prot
Match: HMGB1_CANFA (High mobility group protein B1 OS=Canis familiaris GN=HMGB1 PE=2 SV=3)

HSP 1 Score: 80.1073 bits (196), Expect = 1.803e-14
Identity = 47/130 (36.15%), Postives = 69/130 (53.08%), Query Frame = 3
Query:  165 SKADAVGTDSKLKSKGARAGKRTAKPEAAKDPNKPKRPPSAFFVFMEEFRKQFKEAHPNNKSVATVGKAAGEKWKSMSDDEKAPFVEKAEKRKSDYNKNMQDYNKQ-----LADGVNAAEENESDKSKSE 539
            +KAD    + ++K+     G+   K    KDPN PKRPPSAFF+F  E+R + K  HP   S+  V K  GE W + + D+K P+ +KA K K  Y K++  Y  +        GV  AE+++  K + E
Sbjct:   64 AKADKARYEREMKTYIPPKGETKKK---FKDPNAPKRPPSAFFLFCSEYRPKIKGEHP-GLSIGDVAKKLGEMWNNTAADDKQPYEKKAAKLKEKYEKDIAAYRAKGKPDAAKKGVVKAEKSKKKKEEEE 189          
BLAST of CK935354 vs. ExPASy Swiss-Prot
Match: HMGB1_CALMO (High mobility group protein B1 OS=Callicebus moloch GN=HMGB1 PE=3 SV=1)

HSP 1 Score: 80.1073 bits (196), Expect = 1.803e-14
Identity = 47/130 (36.15%), Postives = 69/130 (53.08%), Query Frame = 3
Query:  165 SKADAVGTDSKLKSKGARAGKRTAKPEAAKDPNKPKRPPSAFFVFMEEFRKQFKEAHPNNKSVATVGKAAGEKWKSMSDDEKAPFVEKAEKRKSDYNKNMQDYNKQ-----LADGVNAAEENESDKSKSE 539
            +KAD    + ++K+     G+   K    KDPN PKRPPSAFF+F  E+R + K  HP   S+  V K  GE W + + D+K P+ +KA K K  Y K++  Y  +        GV  AE+++  K + E
Sbjct:   64 AKADKARYEREMKTYIPPKGETKKK---FKDPNAPKRPPSAFFLFCSEYRPKIKGEHP-GLSIGDVAKKLGEMWNNTAADDKQPYEKKAAKLKEKYEKDIAAYRAKGKPDAAKKGVVKAEKSKKKKEEEE 189          
BLAST of CK935354 vs. ExPASy Swiss-Prot
Match: HMGB1_CALJA (High mobility group protein B1 OS=Callithrix jacchus GN=HMGB1 PE=3 SV=1)

HSP 1 Score: 80.1073 bits (196), Expect = 1.803e-14
Identity = 47/130 (36.15%), Postives = 69/130 (53.08%), Query Frame = 3
Query:  165 SKADAVGTDSKLKSKGARAGKRTAKPEAAKDPNKPKRPPSAFFVFMEEFRKQFKEAHPNNKSVATVGKAAGEKWKSMSDDEKAPFVEKAEKRKSDYNKNMQDYNKQ-----LADGVNAAEENESDKSKSE 539
            +KAD    + ++K+     G+   K    KDPN PKRPPSAFF+F  E+R + K  HP   S+  V K  GE W + + D+K P+ +KA K K  Y K++  Y  +        GV  AE+++  K + E
Sbjct:   64 AKADKARYEREMKTYIPPKGETKKK---FKDPNAPKRPPSAFFLFCSEYRPKIKGEHP-GLSIGDVAKKLGEMWNNTAADDKQPYEKKAAKLKEKYEKDIAAYRAKGKPDAAKKGVVKAEKSKKKKEEEE 189          
BLAST of CK935354 vs. ExPASy Swiss-Prot
Match: HMGB1_BOVIN (High mobility group protein B1 OS=Bos taurus GN=HMGB1 PE=1 SV=3)

HSP 1 Score: 80.1073 bits (196), Expect = 1.803e-14
Identity = 47/130 (36.15%), Postives = 69/130 (53.08%), Query Frame = 3
Query:  165 SKADAVGTDSKLKSKGARAGKRTAKPEAAKDPNKPKRPPSAFFVFMEEFRKQFKEAHPNNKSVATVGKAAGEKWKSMSDDEKAPFVEKAEKRKSDYNKNMQDYNKQ-----LADGVNAAEENESDKSKSE 539
            +KAD    + ++K+     G+   K    KDPN PKRPPSAFF+F  E+R + K  HP   S+  V K  GE W + + D+K P+ +KA K K  Y K++  Y  +        GV  AE+++  K + E
Sbjct:   64 AKADKARYEREMKTYIPPKGETKKK---FKDPNAPKRPPSAFFLFCSEYRPKIKGEHP-GLSIGDVAKKLGEMWNNTAADDKQPYEKKAAKLKEKYEKDIAAYRAKGKPDAAKKGVVKAEKSKKKKEEEE 189          
BLAST of CK935354 vs. ExPASy Swiss-Prot
Match: HMGB1_PIG (High mobility group protein B1 OS=Sus scrofa GN=HMGB1 PE=2 SV=3)

HSP 1 Score: 79.7221 bits (195), Expect = 2.355e-14
Identity = 47/130 (36.15%), Postives = 69/130 (53.08%), Query Frame = 3
Query:  165 SKADAVGTDSKLKSKGARAGKRTAKPEAAKDPNKPKRPPSAFFVFMEEFRKQFKEAHPNNKSVATVGKAAGEKWKSMSDDEKAPFVEKAEKRKSDYNKNMQDYNKQ-----LADGVNAAEENESDKSKSE 539
            +KAD    + ++K+     G+   K    KDPN PKRPPSAFF+F  E+R + K  HP   S+  V K  GE W + + D+K P+ +KA K K  Y K++  Y  +        GV  AE+++  K + E
Sbjct:   64 AKADKARYEREMKTYIPPKGETKKK---FKDPNAPKRPPSAFFLFCSEYRPKIKGEHP-GLSIGDVAKKLGEMWNNTAADDKHPYEKKAAKLKEKYEKDIAAYRAKGKPDAAKKGVVKAEKSKKKKEEEE 189          
The following BLAST results are available for this feature:
BLAST of CK935354 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 46
Match NameE-valueIdentityDescription
HMG3M_HUMAN4.745e-1537.80Putative high mobility group protein B3-like prote... [more]
HMGB1_PAPAN1.803e-1436.15High mobility group protein B1 OS=Papio anubis GN=... [more]
HMGB1_MACFA1.803e-1436.15High mobility group protein B1 OS=Macaca fascicula... [more]
HMGB1_HUMAN1.803e-1436.15High mobility group protein B1 OS=Homo sapiens GN=... [more]
HMGB1_HORSE1.803e-1436.15High mobility group protein B1 OS=Equus caballus G... [more]
HMGB1_CANFA1.803e-1436.15High mobility group protein B1 OS=Canis familiaris... [more]
HMGB1_CALMO1.803e-1436.15High mobility group protein B1 OS=Callicebus moloc... [more]
HMGB1_CALJA1.803e-1436.15High mobility group protein B1 OS=Callithrix jacch... [more]
HMGB1_BOVIN1.803e-1436.15High mobility group protein B1 OS=Bos taurus GN=HM... [more]
HMGB1_PIG2.355e-1436.15High mobility group protein B1 OS=Sus scrofa GN=HM... [more]

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Properties
Property NameValue
Genbank descriptionCGF1004562_F07 Developing fruit 24 DAFB Citrus sinensis cDNA clone T24DAB0001_IF_F07 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK935354 ID=CK935354; Name=CK935354; organism=Citrus sinensis; type=EST; length=873bp
GCGGGGAAAACAAAGCATATCCTTTTGTCTTCNNNAAACCCTAACCTCAC
CAGGTAACTCGCTGAGTCTCTCCGGCGCTGACTCATCCGAGTCACCCCGA
TTTTCACCGATTCTCACCGGTTTGCGTCATTTTTAGTGCAGGATTCATCA
TGAAAGGAGGCAGATCGAAAGCTGACGCGGTAGGAACTGATAGCAAGCTG
AAGAGCAAAGGGGCGAGAGCCGGCAAGCGAACAGCGAAGCCCGAGGCTGC
GAAAGATCCAAACAAGCCGAAGAGGCCTCCTAGTGCTTTCTTCGTTTTCA
TGGAGGAGTTCAGGAAGCAGTTCAAAGAAGCTCATCCTAACAATAAATCT
GTTGCTACTGTTGGCAAAGCTGCTGGAGAAAAATGGAAGTCAATGTCAGA
TGATGAGAAAGCGCCATTTGTTGAAAAGGCTGAGAAAAGAAAGTCTGATT
ACAACAAGAACATGCAGGATTACAACAAGCAGTTGGCTGATGGAGTAAAT
GCTGCTGAGGAAAATGAATCTGACAAGTCCAAGTCTGAAGTGAATGATGA
GGATGATGAAGAAGGCAGTGGAGAGGAGGAAGATGATGATTAGAGAATGG
CAGCGAAGGATTCAAAAAGTTGAAGTTTTAGCAATCTAGTAGAATTGCTT
ATAACATGATAACCCTTAGCCTTTTAGATTAGATTAGGAAAGAAATCAAG
TGTTGTTCAGGATTTACTGAAGCACCATATCGATGGATACGTACCTAAAT
GTTCTCTTAAGTCTTTAATCATCTAGTTTCAACATTTATATGTATTATTT
ATTTGTCTATCTTGTTGCTTTTATCAGTTATTTTTCATGTTGGTGCACAT
TGGCCACTGCTTGTTGGTTGCTT
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