CK935354

Overview
NameCK935354
Unique NameCK935354
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length873
Libraries
Library NameType
Developing fruit 24 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig1802 contig Csv1_Contig1802:1..873. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CK935354 vs. ExPASy Swiss-Prot
Match: HMGB1_RAT (High mobility group protein B1 OS=Rattus norvegicus GN=Hmgb1 PE=1 SV=2)

HSP 1 Score: 78.9518 bits (193), Expect = 4.017e-14
Identity = 46/130 (35.38%), Postives = 69/130 (53.08%), Query Frame = 3
Query:  165 SKADAVGTDSKLKSKGARAGKRTAKPEAAKDPNKPKRPPSAFFVFMEEFRKQFKEAHPNNKSVATVGKAAGEKWKSMSDDEKAPFVEKAEKRKSDYNKNMQDYNKQ-----LADGVNAAEENESDKSKSE 539
            +KAD    + ++K+     G+   K    KDPN PKRPPSAFF+F  E+R + K  HP   S+  V K  GE W + + D+K P+ +KA K K  Y K++  Y  +        GV  AE+++  K + +
Sbjct:   64 AKADKARYEREMKTYIPPKGETKKK---FKDPNAPKRPPSAFFLFCSEYRPKIKGEHP-GLSIGDVAKKLGEMWNNTAADDKQPYEKKAAKLKEKYEKDIAAYRAKGKPDAAKKGVVKAEKSKKKKEEED 189          
BLAST of CK935354 vs. ExPASy Swiss-Prot
Match: HMGB1_MOUSE (High mobility group protein B1 OS=Mus musculus GN=Hmgb1 PE=1 SV=2)

HSP 1 Score: 78.9518 bits (193), Expect = 4.017e-14
Identity = 46/130 (35.38%), Postives = 69/130 (53.08%), Query Frame = 3
Query:  165 SKADAVGTDSKLKSKGARAGKRTAKPEAAKDPNKPKRPPSAFFVFMEEFRKQFKEAHPNNKSVATVGKAAGEKWKSMSDDEKAPFVEKAEKRKSDYNKNMQDYNKQ-----LADGVNAAEENESDKSKSE 539
            +KAD    + ++K+     G+   K    KDPN PKRPPSAFF+F  E+R + K  HP   S+  V K  GE W + + D+K P+ +KA K K  Y K++  Y  +        GV  AE+++  K + +
Sbjct:   64 AKADKARYEREMKTYIPPKGETKKK---FKDPNAPKRPPSAFFLFCSEYRPKIKGEHP-GLSIGDVAKKLGEMWNNTAADDKQPYEKKAAKLKEKYEKDIAAYRAKGKPDAAKKGVVKAEKSKKKKEEED 189          
BLAST of CK935354 vs. ExPASy Swiss-Prot
Match: HMGB1_CRIGR (High mobility group protein B1 (Fragment) OS=Cricetulus griseus GN=HMGB1 PE=1 SV=1)

HSP 1 Score: 78.9518 bits (193), Expect = 4.017e-14
Identity = 46/130 (35.38%), Postives = 69/130 (53.08%), Query Frame = 3
Query:  165 SKADAVGTDSKLKSKGARAGKRTAKPEAAKDPNKPKRPPSAFFVFMEEFRKQFKEAHPNNKSVATVGKAAGEKWKSMSDDEKAPFVEKAEKRKSDYNKNMQDYNKQ-----LADGVNAAEENESDKSKSE 539
            +KAD    + ++K+     G+   K    KDPN PKRPPSAFF+F  E+R + K  HP   S+  V K  GE W + + D+K P+ +KA K K  Y K++  Y  +        GV  AE+++  K + +
Sbjct:   29 AKADKARYEREMKTYIPPKGETKKK---FKDPNAPKRPPSAFFLFCSEYRPKIKGEHP-GLSIGDVAKKLGEMWNNTAADDKQPYEKKAAKLKEKYEKDIAAYRAKGKPDAAKKGVVKAEKSKKKKEEED 154          
BLAST of CK935354 vs. ExPASy Swiss-Prot
Match: SSRP1_XENLA (FACT complex subunit SSRP1 OS=Xenopus laevis GN=ssrp1 PE=1 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 2.603e-13
Identity = 46/126 (36.51%), Postives = 71/126 (56.35%), Query Frame = 3
Query:  186 TDSKLKSKGARAGKRTA---KPEA--AKDPNKPKRPPSAFFVFMEEFRKQFKEAHPNNKSVATVGKAAGEKWKSMSDDEKAPFVEKAEKRKSDYNKNMQDYNKQLADGVNAAE-ENESDKSKSEVN 545
            TD K  +K A+  K+     KPEA   KDP  PKRP SA+ +++   R++ K  +P   S+  + K AGE WK+MS D+K  +  +AE+ K DY K M++YN       +  E + + +K K+E +
Sbjct:  509 TDKKKDAKRAKIVKQKKPRKKPEAKKTKDPGAPKRPMSAYMLWLNASREKIKSENPGI-SITDLSKKAGEIWKNMSRDKKEEWDRRAEEAKRDYEKAMKEYNTSAPTEASKKEKKTKGEKKKAETS 633          
BLAST of CK935354 vs. ExPASy Swiss-Prot
Match: HMGB2_RAT (High mobility group protein B2 OS=Rattus norvegicus GN=Hmgb2 PE=2 SV=2)

HSP 1 Score: 76.2554 bits (186), Expect = 2.603e-13
Identity = 42/107 (39.25%), Postives = 57/107 (53.27%), Query Frame = 3
Query:  165 SKADAVGTDSKLKS----KGARAGKRTAKPEAAKDPNKPKRPPSAFFVFMEEFRKQFKEAHPNNKSVATVGKAAGEKWKSMSDDEKAPFVEKAEKRKSDYNKNMQDY 473
            +K+D    D ++K+    KG + GK+       KDPN PKRPPSAFF+F  E R + K  HP   S+    K  GE W   S  +K P+ +KA K K  Y K++  Y
Sbjct:   64 AKSDKARYDREMKNYVPPKGDKKGKK-------KDPNAPKRPPSAFFLFCSEHRPKIKSEHP-GLSIGDTAKKLGEMWSEQSAKDKQPYEQKAAKLKEKYEKDIAAY 162          
BLAST of CK935354 vs. ExPASy Swiss-Prot
Match: HMGB2_PIG (High mobility group protein B2 OS=Sus scrofa GN=HMGB2 PE=1 SV=2)

HSP 1 Score: 76.2554 bits (186), Expect = 2.603e-13
Identity = 42/107 (39.25%), Postives = 57/107 (53.27%), Query Frame = 3
Query:  165 SKADAVGTDSKLKS----KGARAGKRTAKPEAAKDPNKPKRPPSAFFVFMEEFRKQFKEAHPNNKSVATVGKAAGEKWKSMSDDEKAPFVEKAEKRKSDYNKNMQDY 473
            +K+D    D ++K+    KG + GK+       KDPN PKRPPSAFF+F  E R + K  HP   S+    K  GE W   S  +K P+ +KA K K  Y K++  Y
Sbjct:   64 AKSDKARYDREMKNYVPPKGDKKGKK-------KDPNAPKRPPSAFFLFCSEHRPKIKSEHP-GLSIGDTAKKLGEMWSEQSAKDKQPYEQKAAKLKEKYEKDIAAY 162          
BLAST of CK935354 vs. ExPASy Swiss-Prot
Match: HMGB2_HUMAN (High mobility group protein B2 OS=Homo sapiens GN=HMGB2 PE=1 SV=2)

HSP 1 Score: 76.2554 bits (186), Expect = 2.603e-13
Identity = 42/107 (39.25%), Postives = 57/107 (53.27%), Query Frame = 3
Query:  165 SKADAVGTDSKLKS----KGARAGKRTAKPEAAKDPNKPKRPPSAFFVFMEEFRKQFKEAHPNNKSVATVGKAAGEKWKSMSDDEKAPFVEKAEKRKSDYNKNMQDY 473
            +K+D    D ++K+    KG + GK+       KDPN PKRPPSAFF+F  E R + K  HP   S+    K  GE W   S  +K P+ +KA K K  Y K++  Y
Sbjct:   64 AKSDKARYDREMKNYVPPKGDKKGKK-------KDPNAPKRPPSAFFLFCSEHRPKIKSEHP-GLSIGDTAKKLGEMWSEQSAKDKQPYEQKAAKLKEKYEKDIAAY 162          
BLAST of CK935354 vs. ExPASy Swiss-Prot
Match: HMGB2_BOVIN (High mobility group protein B2 OS=Bos taurus GN=HMGB2 PE=1 SV=3)

HSP 1 Score: 76.2554 bits (186), Expect = 2.603e-13
Identity = 42/107 (39.25%), Postives = 57/107 (53.27%), Query Frame = 3
Query:  165 SKADAVGTDSKLKS----KGARAGKRTAKPEAAKDPNKPKRPPSAFFVFMEEFRKQFKEAHPNNKSVATVGKAAGEKWKSMSDDEKAPFVEKAEKRKSDYNKNMQDY 473
            +K+D    D ++K+    KG + GK+       KDPN PKRPPSAFF+F  E R + K  HP   S+    K  GE W   S  +K P+ +KA K K  Y K++  Y
Sbjct:   64 AKSDKARYDREMKNYVPPKGDKKGKK-------KDPNAPKRPPSAFFLFCSEHRPKIKSEHP-GLSIGDTAKKLGEMWSEQSAKDKQPYEQKAAKLKEKYEKDIAAY 162          
BLAST of CK935354 vs. ExPASy Swiss-Prot
Match: HGB1A_HUMAN (Putative high mobility group protein B1-like 1 OS=Homo sapiens GN=HMGB1L1 PE=5 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 3.400e-13
Identity = 46/130 (35.38%), Postives = 67/130 (51.54%), Query Frame = 3
Query:  165 SKADAVGTDSKLKSKGARAGKRTAKPEAAKDPNKPKRPPSAFFVFMEEFRKQFKEAHPNNKSVATVGKAAGEKWKSMSDDEKAPFVEKAEKRKSDYNKNMQDYN-----KQLADGVNAAEENESDKSKSE 539
            +KAD    + ++K+     G+   K    KDPN PKRPPSAFF+F  E+  + K  HP   S+  V K  GE W + + D+K P  +KA K K  Y K++  Y      +    GV  AE+++  K + E
Sbjct:   64 AKADKTHYERQMKTYIPPKGETKKK---FKDPNAPKRPPSAFFLFCSEYHPKIKGEHP-GLSIGDVAKKLGEMWNNTAADDKQPGEKKAAKLKEKYEKDIAAYQAKGKPEAAKKGVVKAEKSKKKKEEEE 189          
BLAST of CK935354 vs. ExPASy Swiss-Prot
Match: SSRP1_CHICK (FACT complex subunit SSRP1 OS=Gallus gallus GN=SSRP1 PE=2 SV=2)

HSP 1 Score: 75.0998 bits (183), Expect = 5.800e-13
Identity = 39/111 (35.14%), Postives = 61/111 (54.95%), Query Frame = 3
Query:  207 KGARAGKRTAKPEAAKDPNKPKRPPSAFFVFMEEFRKQFKEAHPNNKSVATVGKAAGEKWKSMSDDEKAPFVEKAEKRKSDYNKNMQDYNKQLADGVNAAEENESDKSKSE 539
            K  +  K+  + +  KDPN PKRP SA+ +++   R++ K  HP   S+  + K AGE WK+MS ++K  +  KAE  K DY K M++Y+       +  E ++  K K E
Sbjct:  525 KDRKPRKKQVESKKGKDPNAPKRPMSAYMLWLNANREKIKSDHPGI-SITDLSKKAGELWKAMSKEKKEEWDRKAEDAKRDYEKAMKEYSVGNKSESSKMERSKKKKKKQE 634          
The following BLAST results are available for this feature:
BLAST of CK935354 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 46
Match NameE-valueIdentityDescription
HMGB1_RAT4.017e-1435.38High mobility group protein B1 OS=Rattus norvegicu... [more]
HMGB1_MOUSE4.017e-1435.38High mobility group protein B1 OS=Mus musculus GN=... [more]
HMGB1_CRIGR4.017e-1435.38High mobility group protein B1 (Fragment) OS=Crice... [more]
SSRP1_XENLA2.603e-1336.51FACT complex subunit SSRP1 OS=Xenopus laevis GN=ss... [more]
HMGB2_RAT2.603e-1339.25High mobility group protein B2 OS=Rattus norvegicu... [more]
HMGB2_PIG2.603e-1339.25High mobility group protein B2 OS=Sus scrofa GN=HM... [more]
HMGB2_HUMAN2.603e-1339.25High mobility group protein B2 OS=Homo sapiens GN=... [more]
HMGB2_BOVIN2.603e-1339.25High mobility group protein B2 OS=Bos taurus GN=HM... [more]
HGB1A_HUMAN3.400e-1335.38Putative high mobility group protein B1-like 1 OS=... [more]
SSRP1_CHICK5.800e-1335.14FACT complex subunit SSRP1 OS=Gallus gallus GN=SSR... [more]

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Properties
Property NameValue
Genbank descriptionCGF1004562_F07 Developing fruit 24 DAFB Citrus sinensis cDNA clone T24DAB0001_IF_F07 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK935354 ID=CK935354; Name=CK935354; organism=Citrus sinensis; type=EST; length=873bp
GCGGGGAAAACAAAGCATATCCTTTTGTCTTCNNNAAACCCTAACCTCAC
CAGGTAACTCGCTGAGTCTCTCCGGCGCTGACTCATCCGAGTCACCCCGA
TTTTCACCGATTCTCACCGGTTTGCGTCATTTTTAGTGCAGGATTCATCA
TGAAAGGAGGCAGATCGAAAGCTGACGCGGTAGGAACTGATAGCAAGCTG
AAGAGCAAAGGGGCGAGAGCCGGCAAGCGAACAGCGAAGCCCGAGGCTGC
GAAAGATCCAAACAAGCCGAAGAGGCCTCCTAGTGCTTTCTTCGTTTTCA
TGGAGGAGTTCAGGAAGCAGTTCAAAGAAGCTCATCCTAACAATAAATCT
GTTGCTACTGTTGGCAAAGCTGCTGGAGAAAAATGGAAGTCAATGTCAGA
TGATGAGAAAGCGCCATTTGTTGAAAAGGCTGAGAAAAGAAAGTCTGATT
ACAACAAGAACATGCAGGATTACAACAAGCAGTTGGCTGATGGAGTAAAT
GCTGCTGAGGAAAATGAATCTGACAAGTCCAAGTCTGAAGTGAATGATGA
GGATGATGAAGAAGGCAGTGGAGAGGAGGAAGATGATGATTAGAGAATGG
CAGCGAAGGATTCAAAAAGTTGAAGTTTTAGCAATCTAGTAGAATTGCTT
ATAACATGATAACCCTTAGCCTTTTAGATTAGATTAGGAAAGAAATCAAG
TGTTGTTCAGGATTTACTGAAGCACCATATCGATGGATACGTACCTAAAT
GTTCTCTTAAGTCTTTAATCATCTAGTTTCAACATTTATATGTATTATTT
ATTTGTCTATCTTGTTGCTTTTATCAGTTATTTTTCATGTTGGTGCACAT
TGGCCACTGCTTGTTGGTTGCTT
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