CK935354
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Alignments
Homology
BLAST of CK935354 vs. ExPASy Swiss-Prot
Match: HMGB1_RAT (High mobility group protein B1 OS=Rattus norvegicus GN=Hmgb1 PE=1 SV=2) HSP 1 Score: 78.9518 bits (193), Expect = 4.017e-14 Identity = 46/130 (35.38%), Postives = 69/130 (53.08%), Query Frame = 3 Query: 165 SKADAVGTDSKLKSKGARAGKRTAKPEAAKDPNKPKRPPSAFFVFMEEFRKQFKEAHPNNKSVATVGKAAGEKWKSMSDDEKAPFVEKAEKRKSDYNKNMQDYNKQ-----LADGVNAAEENESDKSKSE 539 +KAD + ++K+ G+ K KDPN PKRPPSAFF+F E+R + K HP S+ V K GE W + + D+K P+ +KA K K Y K++ Y + GV AE+++ K + + Sbjct: 64 AKADKARYEREMKTYIPPKGETKKK---FKDPNAPKRPPSAFFLFCSEYRPKIKGEHP-GLSIGDVAKKLGEMWNNTAADDKQPYEKKAAKLKEKYEKDIAAYRAKGKPDAAKKGVVKAEKSKKKKEEED 189
BLAST of CK935354 vs. ExPASy Swiss-Prot
Match: HMGB1_MOUSE (High mobility group protein B1 OS=Mus musculus GN=Hmgb1 PE=1 SV=2) HSP 1 Score: 78.9518 bits (193), Expect = 4.017e-14 Identity = 46/130 (35.38%), Postives = 69/130 (53.08%), Query Frame = 3 Query: 165 SKADAVGTDSKLKSKGARAGKRTAKPEAAKDPNKPKRPPSAFFVFMEEFRKQFKEAHPNNKSVATVGKAAGEKWKSMSDDEKAPFVEKAEKRKSDYNKNMQDYNKQ-----LADGVNAAEENESDKSKSE 539 +KAD + ++K+ G+ K KDPN PKRPPSAFF+F E+R + K HP S+ V K GE W + + D+K P+ +KA K K Y K++ Y + GV AE+++ K + + Sbjct: 64 AKADKARYEREMKTYIPPKGETKKK---FKDPNAPKRPPSAFFLFCSEYRPKIKGEHP-GLSIGDVAKKLGEMWNNTAADDKQPYEKKAAKLKEKYEKDIAAYRAKGKPDAAKKGVVKAEKSKKKKEEED 189
BLAST of CK935354 vs. ExPASy Swiss-Prot
Match: HMGB1_CRIGR (High mobility group protein B1 (Fragment) OS=Cricetulus griseus GN=HMGB1 PE=1 SV=1) HSP 1 Score: 78.9518 bits (193), Expect = 4.017e-14 Identity = 46/130 (35.38%), Postives = 69/130 (53.08%), Query Frame = 3 Query: 165 SKADAVGTDSKLKSKGARAGKRTAKPEAAKDPNKPKRPPSAFFVFMEEFRKQFKEAHPNNKSVATVGKAAGEKWKSMSDDEKAPFVEKAEKRKSDYNKNMQDYNKQ-----LADGVNAAEENESDKSKSE 539 +KAD + ++K+ G+ K KDPN PKRPPSAFF+F E+R + K HP S+ V K GE W + + D+K P+ +KA K K Y K++ Y + GV AE+++ K + + Sbjct: 29 AKADKARYEREMKTYIPPKGETKKK---FKDPNAPKRPPSAFFLFCSEYRPKIKGEHP-GLSIGDVAKKLGEMWNNTAADDKQPYEKKAAKLKEKYEKDIAAYRAKGKPDAAKKGVVKAEKSKKKKEEED 154
BLAST of CK935354 vs. ExPASy Swiss-Prot
Match: SSRP1_XENLA (FACT complex subunit SSRP1 OS=Xenopus laevis GN=ssrp1 PE=1 SV=1) HSP 1 Score: 76.2554 bits (186), Expect = 2.603e-13 Identity = 46/126 (36.51%), Postives = 71/126 (56.35%), Query Frame = 3 Query: 186 TDSKLKSKGARAGKRTA---KPEA--AKDPNKPKRPPSAFFVFMEEFRKQFKEAHPNNKSVATVGKAAGEKWKSMSDDEKAPFVEKAEKRKSDYNKNMQDYNKQLADGVNAAE-ENESDKSKSEVN 545 TD K +K A+ K+ KPEA KDP PKRP SA+ +++ R++ K +P S+ + K AGE WK+MS D+K + +AE+ K DY K M++YN + E + + +K K+E + Sbjct: 509 TDKKKDAKRAKIVKQKKPRKKPEAKKTKDPGAPKRPMSAYMLWLNASREKIKSENPGI-SITDLSKKAGEIWKNMSRDKKEEWDRRAEEAKRDYEKAMKEYNTSAPTEASKKEKKTKGEKKKAETS 633
BLAST of CK935354 vs. ExPASy Swiss-Prot
Match: HMGB2_RAT (High mobility group protein B2 OS=Rattus norvegicus GN=Hmgb2 PE=2 SV=2) HSP 1 Score: 76.2554 bits (186), Expect = 2.603e-13 Identity = 42/107 (39.25%), Postives = 57/107 (53.27%), Query Frame = 3 Query: 165 SKADAVGTDSKLKS----KGARAGKRTAKPEAAKDPNKPKRPPSAFFVFMEEFRKQFKEAHPNNKSVATVGKAAGEKWKSMSDDEKAPFVEKAEKRKSDYNKNMQDY 473 +K+D D ++K+ KG + GK+ KDPN PKRPPSAFF+F E R + K HP S+ K GE W S +K P+ +KA K K Y K++ Y Sbjct: 64 AKSDKARYDREMKNYVPPKGDKKGKK-------KDPNAPKRPPSAFFLFCSEHRPKIKSEHP-GLSIGDTAKKLGEMWSEQSAKDKQPYEQKAAKLKEKYEKDIAAY 162
BLAST of CK935354 vs. ExPASy Swiss-Prot
Match: HMGB2_PIG (High mobility group protein B2 OS=Sus scrofa GN=HMGB2 PE=1 SV=2) HSP 1 Score: 76.2554 bits (186), Expect = 2.603e-13 Identity = 42/107 (39.25%), Postives = 57/107 (53.27%), Query Frame = 3 Query: 165 SKADAVGTDSKLKS----KGARAGKRTAKPEAAKDPNKPKRPPSAFFVFMEEFRKQFKEAHPNNKSVATVGKAAGEKWKSMSDDEKAPFVEKAEKRKSDYNKNMQDY 473 +K+D D ++K+ KG + GK+ KDPN PKRPPSAFF+F E R + K HP S+ K GE W S +K P+ +KA K K Y K++ Y Sbjct: 64 AKSDKARYDREMKNYVPPKGDKKGKK-------KDPNAPKRPPSAFFLFCSEHRPKIKSEHP-GLSIGDTAKKLGEMWSEQSAKDKQPYEQKAAKLKEKYEKDIAAY 162
BLAST of CK935354 vs. ExPASy Swiss-Prot
Match: HMGB2_HUMAN (High mobility group protein B2 OS=Homo sapiens GN=HMGB2 PE=1 SV=2) HSP 1 Score: 76.2554 bits (186), Expect = 2.603e-13 Identity = 42/107 (39.25%), Postives = 57/107 (53.27%), Query Frame = 3 Query: 165 SKADAVGTDSKLKS----KGARAGKRTAKPEAAKDPNKPKRPPSAFFVFMEEFRKQFKEAHPNNKSVATVGKAAGEKWKSMSDDEKAPFVEKAEKRKSDYNKNMQDY 473 +K+D D ++K+ KG + GK+ KDPN PKRPPSAFF+F E R + K HP S+ K GE W S +K P+ +KA K K Y K++ Y Sbjct: 64 AKSDKARYDREMKNYVPPKGDKKGKK-------KDPNAPKRPPSAFFLFCSEHRPKIKSEHP-GLSIGDTAKKLGEMWSEQSAKDKQPYEQKAAKLKEKYEKDIAAY 162
BLAST of CK935354 vs. ExPASy Swiss-Prot
Match: HMGB2_BOVIN (High mobility group protein B2 OS=Bos taurus GN=HMGB2 PE=1 SV=3) HSP 1 Score: 76.2554 bits (186), Expect = 2.603e-13 Identity = 42/107 (39.25%), Postives = 57/107 (53.27%), Query Frame = 3 Query: 165 SKADAVGTDSKLKS----KGARAGKRTAKPEAAKDPNKPKRPPSAFFVFMEEFRKQFKEAHPNNKSVATVGKAAGEKWKSMSDDEKAPFVEKAEKRKSDYNKNMQDY 473 +K+D D ++K+ KG + GK+ KDPN PKRPPSAFF+F E R + K HP S+ K GE W S +K P+ +KA K K Y K++ Y Sbjct: 64 AKSDKARYDREMKNYVPPKGDKKGKK-------KDPNAPKRPPSAFFLFCSEHRPKIKSEHP-GLSIGDTAKKLGEMWSEQSAKDKQPYEQKAAKLKEKYEKDIAAY 162
BLAST of CK935354 vs. ExPASy Swiss-Prot
Match: HGB1A_HUMAN (Putative high mobility group protein B1-like 1 OS=Homo sapiens GN=HMGB1L1 PE=5 SV=1) HSP 1 Score: 75.8702 bits (185), Expect = 3.400e-13 Identity = 46/130 (35.38%), Postives = 67/130 (51.54%), Query Frame = 3 Query: 165 SKADAVGTDSKLKSKGARAGKRTAKPEAAKDPNKPKRPPSAFFVFMEEFRKQFKEAHPNNKSVATVGKAAGEKWKSMSDDEKAPFVEKAEKRKSDYNKNMQDYN-----KQLADGVNAAEENESDKSKSE 539 +KAD + ++K+ G+ K KDPN PKRPPSAFF+F E+ + K HP S+ V K GE W + + D+K P +KA K K Y K++ Y + GV AE+++ K + E Sbjct: 64 AKADKTHYERQMKTYIPPKGETKKK---FKDPNAPKRPPSAFFLFCSEYHPKIKGEHP-GLSIGDVAKKLGEMWNNTAADDKQPGEKKAAKLKEKYEKDIAAYQAKGKPEAAKKGVVKAEKSKKKKEEEE 189
BLAST of CK935354 vs. ExPASy Swiss-Prot
Match: SSRP1_CHICK (FACT complex subunit SSRP1 OS=Gallus gallus GN=SSRP1 PE=2 SV=2) HSP 1 Score: 75.0998 bits (183), Expect = 5.800e-13 Identity = 39/111 (35.14%), Postives = 61/111 (54.95%), Query Frame = 3 Query: 207 KGARAGKRTAKPEAAKDPNKPKRPPSAFFVFMEEFRKQFKEAHPNNKSVATVGKAAGEKWKSMSDDEKAPFVEKAEKRKSDYNKNMQDYNKQLADGVNAAEENESDKSKSE 539 K + K+ + + KDPN PKRP SA+ +++ R++ K HP S+ + K AGE WK+MS ++K + KAE K DY K M++Y+ + E ++ K K E Sbjct: 525 KDRKPRKKQVESKKGKDPNAPKRPMSAYMLWLNANREKIKSDHPGI-SITDLSKKAGELWKAMSKEKKEEWDRKAEDAKRDYEKAMKEYSVGNKSESSKMERSKKKKKKQE 634 The following BLAST results are available for this feature:
BLAST of CK935354 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 46
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Sequences
The
following sequences are available for this feature:
EST sequence >CK935354 ID=CK935354; Name=CK935354; organism=Citrus sinensis; type=EST; length=873bpback to top |