CK935354
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CK935354 vs. ExPASy Swiss-Prot
Match: HMG3L_HUMAN (High mobility group protein B3-like-1 OS=Homo sapiens GN=HMGB3L1 PE=2 SV=1) HSP 1 Score: 75.0998 bits (183), Expect = 5.800e-13 Identity = 48/127 (37.80%), Postives = 66/127 (51.97%), Query Frame = 3 Query: 165 SKADAVGTDSKLKSKG-ARAGKRTAKPEAAKDPNKPKRPPSAFFVFMEEFRKQFKEAHPNNKSVATVGKAAGEKWKSMSDDEKAPFVEKAEKRKSDYNKNMQDY-NKQLADGVNAAEENESDKSKSE 539 +KAD V D ++K G A+ GK DPN PKRP S FF+F EF + K +P S+ V K GE W +++D EK P+V K K K Y K++ DY +K DG + +K + E Sbjct: 2 AKADKVHCDREMKDYGPAKGGKN--------DPNAPKRPLSGFFLFCSEFCPKIKSTNP-GISIGDVAKKLGEMWNNLNDSEKQPYVTKVAKLKK-YEKDVADYKSKGKLDGTKGPAKVAWEKMEEE 118
BLAST of CK935354 vs. ExPASy Swiss-Prot
Match: HMGLX_HUMAN (High mobility group protein 1-like 10 OS=Homo sapiens GN=HMG1L10 PE=1 SV=1) HSP 1 Score: 74.7146 bits (182), Expect = 7.575e-13 Identity = 45/130 (34.62%), Postives = 67/130 (51.54%), Query Frame = 3 Query: 165 SKADAVGTDSKLKSKGARAGKRTAKPEAAKDPNKPKRPPSAFFVFMEEFRKQFKEAHPNNKSVATVGKAAGEKWKSMSDDEKAPFVEKAEKRKSDYNKNMQDYNKQ-----LADGVNAAEENESDKSKSE 539 +KAD + ++K+ G+ K KDPN PKR PSAFF+F +R + K HP S+ V K GE W + + D+K P+ +KA K K Y K++ Y + GV AE+++ K + E Sbjct: 64 AKADKAHYEREMKTYIPPKGETKKK---FKDPNAPKRTPSAFFLFCSAYRPKIKGEHP-GLSIGDVAKKLGEMWNNTAADDKQPYEKKAAKLKEKYEKDIAAYRAKGKPDAAKKGVVKAEKSKKKKEEEE 189
BLAST of CK935354 vs. ExPASy Swiss-Prot
Match: SSRP1_HUMAN (FACT complex subunit SSRP1 OS=Homo sapiens GN=SSRP1 PE=1 SV=1) HSP 1 Score: 74.3294 bits (181), Expect = 9.893e-13 Identity = 48/138 (34.78%), Postives = 68/138 (49.28%), Query Frame = 3 Query: 135 SAGFIMKGGRSKADAVGTDSKLKSKGARAGKRTAKP---EAAKDPNKPKRPPSAFFVFMEEFRKQFKEAHPNNKSVATVGKAAGEKWKSMSDDEKAPFVEKAEKRKSDYNKNMQDYNKQLADGVNAAEENESDKSKSE 539 SA G S D K+K A+ K KP + KDPN PKRP SA+ +++ R++ K HP S+ + K AGE WK MS ++K + KAE + DY K M++Y E ++ DKSK + Sbjct: 500 SASSSSNEGDSDRDEKKRKQLKKAKMAKDRKSRKKPVEVKKGKDPNAPKRPMSAYMLWLNASREKIKSDHPGI-SITDLSKKAGEIWKGMSKEKKEEWDRKAEDARRDYEKAMKEYEG------GRGESSKRDKSKKK 630
BLAST of CK935354 vs. ExPASy Swiss-Prot
Match: HMGB2_MOUSE (High mobility group protein B2 OS=Mus musculus GN=Hmgb2 PE=1 SV=3) HSP 1 Score: 74.3294 bits (181), Expect = 9.893e-13 Identity = 42/107 (39.25%), Postives = 57/107 (53.27%), Query Frame = 3 Query: 165 SKADAVGTDSKLKS----KGARAGKRTAKPEAAKDPNKPKRPPSAFFVFMEEFRKQFKEAHPNNKSVATVGKAAGEKWKSMSDDEKAPFVEKAEKRKSDYNKNMQDY 473 +K+D D ++K+ KG + GK+ KDPN PKRPPSAFF+F E R + K HP S+ K GE W S +K P+ +KA K K Y K++ Y Sbjct: 64 AKSDKARYDREMKNYVPPKGDKKGKK-------KDPNAPKRPPSAFFLFCSENRPKIKIEHP-GLSIGDTAKKLGEMWSEQSAKDKQPYEQKAAKLKEKYEKDIAAY 162
BLAST of CK935354 vs. ExPASy Swiss-Prot
Match: HMGH_STRPU (High mobility group protein 1 homolog OS=Strongylocentrotus purpuratus GN=HMG1 PE=2 SV=1) HSP 1 Score: 73.9442 bits (180), Expect = 1.292e-12 Identity = 51/155 (32.90%), Postives = 71/155 (45.81%), Query Frame = 3 Query: 84 HPSHP-DFHRFSPVCVIFSAGFIMKGG-----RSKADAVGTDSKLKSKGARAGKRTAKPEAAKDPNKPKRPPSAFFVFMEEFRKQFKEAHPNNKSVATVGKAAGEKWKSMSDDEKAPFVEKAEKRKSDYNKNMQDYNKQLADGVNAAEENESDKS 530 HP+ P F FS C KG +S D V D +++S G++ + KDP+ PKR SAFF+F E R K HP N SV + K +W++M+ EK PF + A K K Y K M +Y + +E+ S S Sbjct: 33 HPNSPVRFAEFSKDCSARWKALEEKGKGVFHEKSMRDKVRYDREMQSYKPPKGEKNKRRRRRKDPDAPKRNLSAFFIFSGENRAAIKSVHP-NWSVGDIAKELAVRWRAMTAGEKIPFDKGAAKDKERYIKAMAEYKAKAKPMKRQVKESSSSSS 186
BLAST of CK935354 vs. ExPASy Swiss-Prot
Match: SSP1A_CAEEL (FACT complex subunit SSRP1-A OS=Caenorhabditis elegans GN=hmg-4 PE=2 SV=1) HSP 1 Score: 73.559 bits (179), Expect = 1.688e-12 Identity = 43/114 (37.72%), Postives = 58/114 (50.88%), Query Frame = 3 Query: 195 KLKSKGARAGKRTAKPEAAKDPNKPKRPPSAFFVFMEEFRKQFKEAHPNNKSVATVGKAAGEKWKSMSDDEKAPFVEKAEKRKSDYNKNMQDYNKQLADGVNAAEENESDKSKS 536 K + K R K K + KDPN PKR SA+ + R + KE + SVA V K G KWK+MS D+K + EKAE+ KS Y K M++Y K ++ + KS Sbjct: 532 KREKKEKREKKEGKKGKKDKDPNAPKRATSAYMQWFLASRNELKE---DGDSVADVAKKGGAKWKTMSSDDKKKWEEKAEEDKSRYEKEMKEYRKNGPPSSSSKPSSSKTSKKS 642
BLAST of CK935354 vs. ExPASy Swiss-Prot
Match: HMGT_ONCMY (High mobility group-T protein OS=Oncorhynchus mykiss PE=2 SV=2) HSP 1 Score: 73.559 bits (179), Expect = 1.688e-12 Identity = 39/106 (36.79%), Postives = 60/106 (56.60%), Query Frame = 3 Query: 165 SKADAVGTDSKLKSKGARAGKRTAKPEAAKDPNKPKRPPSAFFVFMEEFRKQFKEAHPNNKSVATVGKAAGEKWKSMSDDEKAPFVEKAEKRKSDYNKNMQDYNKQ 482 +K D V + +++S G+ K + KDPN PKRP SAFF+F +FR Q K P S+ V K GEKW +++ ++K P+ +KA + K Y K++ Y + Sbjct: 63 AKLDKVRYEREMRSYIPPKGE---KKKRFKDPNAPKRPSSAFFIFCADFRPQVKGETP-GLSIGDVAKKLGEKWNNLTAEDKVPYEKKASRLKEKYEKDITAYRNK 164
BLAST of CK935354 vs. ExPASy Swiss-Prot
Match: HMGB2_CHICK (High mobility group protein B2 OS=Gallus gallus GN=HMGB2 PE=2 SV=2) HSP 1 Score: 73.559 bits (179), Expect = 1.688e-12 Identity = 41/107 (38.32%), Postives = 55/107 (51.40%), Query Frame = 3 Query: 165 SKADAVGTDSKLKS----KGARAGKRTAKPEAAKDPNKPKRPPSAFFVFMEEFRKQFKEAHPNNKSVATVGKAAGEKWKSMSDDEKAPFVEKAEKRKSDYNKNMQDY 473 +K D D ++K+ KG + GK+ KDPN PKRPPSAFF+F E R + K HP S+ K GE W +K P+ +KA K K Y K++ Y Sbjct: 64 AKGDKARYDREMKNYVPPKGEKKGKK-------KDPNAPKRPPSAFFLFCSEHRPKIKNDHP-GLSIGDTAKKLGEMWSEQLAKDKQPYEQKAAKLKEKYEKDIAAY 162
BLAST of CK935354 vs. ExPASy Swiss-Prot
Match: SSRP1_RAT (FACT complex subunit SSRP1 OS=Rattus norvegicus GN=Ssrp1 PE=1 SV=2) HSP 1 Score: 73.1738 bits (178), Expect = 2.204e-12 Identity = 36/113 (31.86%), Postives = 64/113 (56.64%), Query Frame = 3 Query: 204 SKGARAGKRTAKPEAAKDPNKPKRPPSAFFVFMEEFRKQFKEAHPNNKSVATVGKAAGEKWKSMSDDEKAPFVEKAEKRKSDYNKNMQDYNKQLADGVNAAEENESDKSKSEV 542 +K ++ K++++ + KDPN PKRP SA+ +++ R++ K HP S+ + K AGE WK MS ++K + KAE + +Y K M++Y D + + K K+++ Sbjct: 526 AKDRKSRKKSSEGKKGKDPNAPKRPMSAYMLWLNASREKIKSDHPGI-SITDLSKKAGEIWKGMSKEKKEEWDRKAEDARREYEKAMKEYEGGRGDSSKRDKSKKKKKVKAKL 637
BLAST of CK935354 vs. ExPASy Swiss-Prot
Match: SSRP1_ARATH (FACT complex subunit SSRP1 OS=Arabidopsis thaliana GN=SSRP1 PE=1 SV=2) HSP 1 Score: 73.1738 bits (178), Expect = 2.204e-12 Identity = 40/122 (32.79%), Postives = 61/122 (50.00%), Query Frame = 3 Query: 162 RSKADAVGTDSKLKSKGARAGK-RTAKPEAAKDPNKPKRPPSAFFVFMEEFRKQFKEAHPNNKSVATVGKAAGEKWKSMSDDEKAPFVEKAEKRKSDYNKNMQDYNKQLADGVNAAEENESD 524 + + + G K K+ A G + KP+ KDPN PKR S F F + R K+ HP + VGK G+KW+ MS D+K P+ KA+ K Y + DY V++ +++S+ Sbjct: 526 KEASSSKGLPPKRKTVAADEGSSKRKKPKKKKDPNAPKRAMSGFMFFSQMERDNIKKEHPGI-AFGEVGKVLGDKWRQMSADDKEPYEAKAQVDKQRYKDEISDYKNPQPMNVDSGNDSDSN 646 The following BLAST results are available for this feature:
BLAST of CK935354 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 46
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Sequences
The
following sequences are available for this feature:
EST sequence >CK935354 ID=CK935354; Name=CK935354; organism=Citrus sinensis; type=EST; length=873bpback to top |