CK935354

Overview
NameCK935354
Unique NameCK935354
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length873
Libraries
Library NameType
Developing fruit 24 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CK935354 vs. ExPASy Swiss-Prot
Match: HMG3L_HUMAN (High mobility group protein B3-like-1 OS=Homo sapiens GN=HMGB3L1 PE=2 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 5.800e-13
Identity = 48/127 (37.80%), Postives = 66/127 (51.97%), Query Frame = 3
Query:  165 SKADAVGTDSKLKSKG-ARAGKRTAKPEAAKDPNKPKRPPSAFFVFMEEFRKQFKEAHPNNKSVATVGKAAGEKWKSMSDDEKAPFVEKAEKRKSDYNKNMQDY-NKQLADGVNAAEENESDKSKSE 539
            +KAD V  D ++K  G A+ GK         DPN PKRP S FF+F  EF  + K  +P   S+  V K  GE W +++D EK P+V K  K K  Y K++ DY +K   DG     +   +K + E
Sbjct:    2 AKADKVHCDREMKDYGPAKGGKN--------DPNAPKRPLSGFFLFCSEFCPKIKSTNP-GISIGDVAKKLGEMWNNLNDSEKQPYVTKVAKLKK-YEKDVADYKSKGKLDGTKGPAKVAWEKMEEE 118          
BLAST of CK935354 vs. ExPASy Swiss-Prot
Match: HMGLX_HUMAN (High mobility group protein 1-like 10 OS=Homo sapiens GN=HMG1L10 PE=1 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 7.575e-13
Identity = 45/130 (34.62%), Postives = 67/130 (51.54%), Query Frame = 3
Query:  165 SKADAVGTDSKLKSKGARAGKRTAKPEAAKDPNKPKRPPSAFFVFMEEFRKQFKEAHPNNKSVATVGKAAGEKWKSMSDDEKAPFVEKAEKRKSDYNKNMQDYNKQ-----LADGVNAAEENESDKSKSE 539
            +KAD    + ++K+     G+   K    KDPN PKR PSAFF+F   +R + K  HP   S+  V K  GE W + + D+K P+ +KA K K  Y K++  Y  +        GV  AE+++  K + E
Sbjct:   64 AKADKAHYEREMKTYIPPKGETKKK---FKDPNAPKRTPSAFFLFCSAYRPKIKGEHP-GLSIGDVAKKLGEMWNNTAADDKQPYEKKAAKLKEKYEKDIAAYRAKGKPDAAKKGVVKAEKSKKKKEEEE 189          
BLAST of CK935354 vs. ExPASy Swiss-Prot
Match: SSRP1_HUMAN (FACT complex subunit SSRP1 OS=Homo sapiens GN=SSRP1 PE=1 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 9.893e-13
Identity = 48/138 (34.78%), Postives = 68/138 (49.28%), Query Frame = 3
Query:  135 SAGFIMKGGRSKADAVGTDSKLKSKGARAGKRTAKP---EAAKDPNKPKRPPSAFFVFMEEFRKQFKEAHPNNKSVATVGKAAGEKWKSMSDDEKAPFVEKAEKRKSDYNKNMQDYNKQLADGVNAAEENESDKSKSE 539
            SA      G S  D        K+K A+  K   KP   +  KDPN PKRP SA+ +++   R++ K  HP   S+  + K AGE WK MS ++K  +  KAE  + DY K M++Y           E ++ DKSK +
Sbjct:  500 SASSSSNEGDSDRDEKKRKQLKKAKMAKDRKSRKKPVEVKKGKDPNAPKRPMSAYMLWLNASREKIKSDHPGI-SITDLSKKAGEIWKGMSKEKKEEWDRKAEDARRDYEKAMKEYEG------GRGESSKRDKSKKK 630          
BLAST of CK935354 vs. ExPASy Swiss-Prot
Match: HMGB2_MOUSE (High mobility group protein B2 OS=Mus musculus GN=Hmgb2 PE=1 SV=3)

HSP 1 Score: 74.3294 bits (181), Expect = 9.893e-13
Identity = 42/107 (39.25%), Postives = 57/107 (53.27%), Query Frame = 3
Query:  165 SKADAVGTDSKLKS----KGARAGKRTAKPEAAKDPNKPKRPPSAFFVFMEEFRKQFKEAHPNNKSVATVGKAAGEKWKSMSDDEKAPFVEKAEKRKSDYNKNMQDY 473
            +K+D    D ++K+    KG + GK+       KDPN PKRPPSAFF+F  E R + K  HP   S+    K  GE W   S  +K P+ +KA K K  Y K++  Y
Sbjct:   64 AKSDKARYDREMKNYVPPKGDKKGKK-------KDPNAPKRPPSAFFLFCSENRPKIKIEHP-GLSIGDTAKKLGEMWSEQSAKDKQPYEQKAAKLKEKYEKDIAAY 162          
BLAST of CK935354 vs. ExPASy Swiss-Prot
Match: HMGH_STRPU (High mobility group protein 1 homolog OS=Strongylocentrotus purpuratus GN=HMG1 PE=2 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 1.292e-12
Identity = 51/155 (32.90%), Postives = 71/155 (45.81%), Query Frame = 3
Query:   84 HPSHP-DFHRFSPVCVIFSAGFIMKGG-----RSKADAVGTDSKLKSKGARAGKRTAKPEAAKDPNKPKRPPSAFFVFMEEFRKQFKEAHPNNKSVATVGKAAGEKWKSMSDDEKAPFVEKAEKRKSDYNKNMQDYNKQLADGVNAAEENESDKS 530
            HP+ P  F  FS  C         KG      +S  D V  D +++S     G++  +    KDP+ PKR  SAFF+F  E R   K  HP N SV  + K    +W++M+  EK PF + A K K  Y K M +Y  +        +E+ S  S
Sbjct:   33 HPNSPVRFAEFSKDCSARWKALEEKGKGVFHEKSMRDKVRYDREMQSYKPPKGEKNKRRRRRKDPDAPKRNLSAFFIFSGENRAAIKSVHP-NWSVGDIAKELAVRWRAMTAGEKIPFDKGAAKDKERYIKAMAEYKAKAKPMKRQVKESSSSSS 186          
BLAST of CK935354 vs. ExPASy Swiss-Prot
Match: SSP1A_CAEEL (FACT complex subunit SSRP1-A OS=Caenorhabditis elegans GN=hmg-4 PE=2 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 1.688e-12
Identity = 43/114 (37.72%), Postives = 58/114 (50.88%), Query Frame = 3
Query:  195 KLKSKGARAGKRTAKPEAAKDPNKPKRPPSAFFVFMEEFRKQFKEAHPNNKSVATVGKAAGEKWKSMSDDEKAPFVEKAEKRKSDYNKNMQDYNKQLADGVNAAEENESDKSKS 536
            K + K  R  K   K +  KDPN PKR  SA+  +    R + KE   +  SVA V K  G KWK+MS D+K  + EKAE+ KS Y K M++Y K      ++   +     KS
Sbjct:  532 KREKKEKREKKEGKKGKKDKDPNAPKRATSAYMQWFLASRNELKE---DGDSVADVAKKGGAKWKTMSSDDKKKWEEKAEEDKSRYEKEMKEYRKNGPPSSSSKPSSSKTSKKS 642          
BLAST of CK935354 vs. ExPASy Swiss-Prot
Match: HMGT_ONCMY (High mobility group-T protein OS=Oncorhynchus mykiss PE=2 SV=2)

HSP 1 Score: 73.559 bits (179), Expect = 1.688e-12
Identity = 39/106 (36.79%), Postives = 60/106 (56.60%), Query Frame = 3
Query:  165 SKADAVGTDSKLKSKGARAGKRTAKPEAAKDPNKPKRPPSAFFVFMEEFRKQFKEAHPNNKSVATVGKAAGEKWKSMSDDEKAPFVEKAEKRKSDYNKNMQDYNKQ 482
            +K D V  + +++S     G+   K +  KDPN PKRP SAFF+F  +FR Q K   P   S+  V K  GEKW +++ ++K P+ +KA + K  Y K++  Y  +
Sbjct:   63 AKLDKVRYEREMRSYIPPKGE---KKKRFKDPNAPKRPSSAFFIFCADFRPQVKGETP-GLSIGDVAKKLGEKWNNLTAEDKVPYEKKASRLKEKYEKDITAYRNK 164          
BLAST of CK935354 vs. ExPASy Swiss-Prot
Match: HMGB2_CHICK (High mobility group protein B2 OS=Gallus gallus GN=HMGB2 PE=2 SV=2)

HSP 1 Score: 73.559 bits (179), Expect = 1.688e-12
Identity = 41/107 (38.32%), Postives = 55/107 (51.40%), Query Frame = 3
Query:  165 SKADAVGTDSKLKS----KGARAGKRTAKPEAAKDPNKPKRPPSAFFVFMEEFRKQFKEAHPNNKSVATVGKAAGEKWKSMSDDEKAPFVEKAEKRKSDYNKNMQDY 473
            +K D    D ++K+    KG + GK+       KDPN PKRPPSAFF+F  E R + K  HP   S+    K  GE W      +K P+ +KA K K  Y K++  Y
Sbjct:   64 AKGDKARYDREMKNYVPPKGEKKGKK-------KDPNAPKRPPSAFFLFCSEHRPKIKNDHP-GLSIGDTAKKLGEMWSEQLAKDKQPYEQKAAKLKEKYEKDIAAY 162          
BLAST of CK935354 vs. ExPASy Swiss-Prot
Match: SSRP1_RAT (FACT complex subunit SSRP1 OS=Rattus norvegicus GN=Ssrp1 PE=1 SV=2)

HSP 1 Score: 73.1738 bits (178), Expect = 2.204e-12
Identity = 36/113 (31.86%), Postives = 64/113 (56.64%), Query Frame = 3
Query:  204 SKGARAGKRTAKPEAAKDPNKPKRPPSAFFVFMEEFRKQFKEAHPNNKSVATVGKAAGEKWKSMSDDEKAPFVEKAEKRKSDYNKNMQDYNKQLADGVNAAEENESDKSKSEV 542
            +K  ++ K++++ +  KDPN PKRP SA+ +++   R++ K  HP   S+  + K AGE WK MS ++K  +  KAE  + +Y K M++Y     D     +  +  K K+++
Sbjct:  526 AKDRKSRKKSSEGKKGKDPNAPKRPMSAYMLWLNASREKIKSDHPGI-SITDLSKKAGEIWKGMSKEKKEEWDRKAEDARREYEKAMKEYEGGRGDSSKRDKSKKKKKVKAKL 637          
BLAST of CK935354 vs. ExPASy Swiss-Prot
Match: SSRP1_ARATH (FACT complex subunit SSRP1 OS=Arabidopsis thaliana GN=SSRP1 PE=1 SV=2)

HSP 1 Score: 73.1738 bits (178), Expect = 2.204e-12
Identity = 40/122 (32.79%), Postives = 61/122 (50.00%), Query Frame = 3
Query:  162 RSKADAVGTDSKLKSKGARAGK-RTAKPEAAKDPNKPKRPPSAFFVFMEEFRKQFKEAHPNNKSVATVGKAAGEKWKSMSDDEKAPFVEKAEKRKSDYNKNMQDYNKQLADGVNAAEENESD 524
            +  + + G   K K+  A  G  +  KP+  KDPN PKR  S F  F +  R   K+ HP   +   VGK  G+KW+ MS D+K P+  KA+  K  Y   + DY       V++  +++S+
Sbjct:  526 KEASSSKGLPPKRKTVAADEGSSKRKKPKKKKDPNAPKRAMSGFMFFSQMERDNIKKEHPGI-AFGEVGKVLGDKWRQMSADDKEPYEAKAQVDKQRYKDEISDYKNPQPMNVDSGNDSDSN 646          
The following BLAST results are available for this feature:
BLAST of CK935354 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 46
Match NameE-valueIdentityDescription
HMG3L_HUMAN5.800e-1337.80High mobility group protein B3-like-1 OS=Homo sapi... [more]
HMGLX_HUMAN7.575e-1334.62High mobility group protein 1-like 10 OS=Homo sapi... [more]
SSRP1_HUMAN9.893e-1334.78FACT complex subunit SSRP1 OS=Homo sapiens GN=SSRP... [more]
HMGB2_MOUSE9.893e-1339.25High mobility group protein B2 OS=Mus musculus GN=... [more]
HMGH_STRPU1.292e-1232.90High mobility group protein 1 homolog OS=Strongylo... [more]
SSP1A_CAEEL1.688e-1237.72FACT complex subunit SSRP1-A OS=Caenorhabditis ele... [more]
HMGT_ONCMY1.688e-1236.79High mobility group-T protein OS=Oncorhynchus myki... [more]
HMGB2_CHICK1.688e-1238.32High mobility group protein B2 OS=Gallus gallus GN... [more]
SSRP1_RAT2.204e-1231.86FACT complex subunit SSRP1 OS=Rattus norvegicus GN... [more]
SSRP1_ARATH2.204e-1232.79FACT complex subunit SSRP1 OS=Arabidopsis thaliana... [more]

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Properties
Property NameValue
Genbank descriptionCGF1004562_F07 Developing fruit 24 DAFB Citrus sinensis cDNA clone T24DAB0001_IF_F07 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK935354 ID=CK935354; Name=CK935354; organism=Citrus sinensis; type=EST; length=873bp
GCGGGGAAAACAAAGCATATCCTTTTGTCTTCNNNAAACCCTAACCTCAC
CAGGTAACTCGCTGAGTCTCTCCGGCGCTGACTCATCCGAGTCACCCCGA
TTTTCACCGATTCTCACCGGTTTGCGTCATTTTTAGTGCAGGATTCATCA
TGAAAGGAGGCAGATCGAAAGCTGACGCGGTAGGAACTGATAGCAAGCTG
AAGAGCAAAGGGGCGAGAGCCGGCAAGCGAACAGCGAAGCCCGAGGCTGC
GAAAGATCCAAACAAGCCGAAGAGGCCTCCTAGTGCTTTCTTCGTTTTCA
TGGAGGAGTTCAGGAAGCAGTTCAAAGAAGCTCATCCTAACAATAAATCT
GTTGCTACTGTTGGCAAAGCTGCTGGAGAAAAATGGAAGTCAATGTCAGA
TGATGAGAAAGCGCCATTTGTTGAAAAGGCTGAGAAAAGAAAGTCTGATT
ACAACAAGAACATGCAGGATTACAACAAGCAGTTGGCTGATGGAGTAAAT
GCTGCTGAGGAAAATGAATCTGACAAGTCCAAGTCTGAAGTGAATGATGA
GGATGATGAAGAAGGCAGTGGAGAGGAGGAAGATGATGATTAGAGAATGG
CAGCGAAGGATTCAAAAAGTTGAAGTTTTAGCAATCTAGTAGAATTGCTT
ATAACATGATAACCCTTAGCCTTTTAGATTAGATTAGGAAAGAAATCAAG
TGTTGTTCAGGATTTACTGAAGCACCATATCGATGGATACGTACCTAAAT
GTTCTCTTAAGTCTTTAATCATCTAGTTTCAACATTTATATGTATTATTT
ATTTGTCTATCTTGTTGCTTTTATCAGTTATTTTTCATGTTGGTGCACAT
TGGCCACTGCTTGTTGGTTGCTT
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