CK935354
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CK935354 vs. ExPASy Swiss-Prot
Match: SSRP1_MOUSE (FACT complex subunit SSRP1 OS=Mus musculus GN=Ssrp1 PE=1 SV=2) HSP 1 Score: 72.4034 bits (176), Expect = 3.759e-12 Identity = 35/113 (30.97%), Postives = 64/113 (56.64%), Query Frame = 3 Query: 204 SKGARAGKRTAKPEAAKDPNKPKRPPSAFFVFMEEFRKQFKEAHPNNKSVATVGKAAGEKWKSMSDDEKAPFVEKAEKRKSDYNKNMQDYNKQLADGVNAAEENESDKSKSEV 542 +K ++ +++++ + KDPN PKRP SA+ +++ R++ K HP S+ + K AGE WK MS ++K + KAE + +Y K M++Y D + + K K+++ Sbjct: 526 AKDRKSRRKSSEAKKGKDPNAPKRPMSAYMLWLNASREKIKSDHPGI-SITDLSKKAGEIWKGMSKEKKEEWDRKAEDARREYEKAMKEYEGGRGDSSKRDKSKKKKKVKAKM 637
BLAST of CK935354 vs. ExPASy Swiss-Prot
Match: SSRP1_VICFA (FACT complex subunit SSRP1 OS=Vicia faba GN=SSRP1 PE=2 SV=1) HSP 1 Score: 71.2478 bits (173), Expect = 8.375e-12 Identity = 40/112 (35.71%), Postives = 57/112 (50.89%), Query Frame = 3 Query: 186 TDSKLKSKGARAGKRTAKPEAAKDPNKPKRPPSAFFVFMEEFRKQFKEAHPNNKSVATVGKAAGEKWKSMSDDEKAPFVEKAEKRKSDYNKNMQDYNKQLADGVNAAEENES 521 + SK KSK A K + KDPN PKR S F F + R+ K+ +P S VG+ GEKWK++S +EK P+ KA+ K Y + Y V++ E++S Sbjct: 531 SSSKKKSKDADVDGVKKKQKKKKDPNAPKRALSGFMFFSQMERENLKKTNPGI-SFTDVGRVLGEKWKNLSAEEKEPYEAKAQADKKRYKDEISGYKNPQPMNVDSGNESDS 641
BLAST of CK935354 vs. ExPASy Swiss-Prot
Match: NHP6_NEUCR (Non-histone chromosomal protein 6 OS=Neurospora crassa GN=nhp-6 PE=3 SV=1) HSP 1 Score: 71.2478 bits (173), Expect = 8.375e-12 Identity = 44/108 (40.74%), Postives = 56/108 (51.85%), Query Frame = 3 Query: 207 KGARAGKRTAKPE---AAKDPNKPKRPPSAFFVFMEEFRKQFKEAHPNNKSVATVGKAAGEKWKSMSDDEKAPFVEKAEKRKSDYNKNMQDYNKQLADGVNAAEENES 521 K A K T K E A KDPN PKR SA+ F E R+ +E +P S VGK GE+WK++SD ++AP+ KA K Y Q YN + A+E ES Sbjct: 3 KAAAKSKTTGKVEKRRAKKDPNAPKRGLSAYMFFANEQRENVREENPG-VSFGQVGKILGERWKALSDKQRAPYEAKAAADKKRYEDEKQAYNAE-------ADEEES 102
BLAST of CK935354 vs. ExPASy Swiss-Prot
Match: NHP6_CRYNE (Non-histone chromosomal protein 6 OS=Cryptococcus neoformans GN=NHP6 PE=3 SV=1) HSP 1 Score: 70.4774 bits (171), Expect = 1.429e-11 Identity = 42/119 (35.29%), Postives = 63/119 (52.94%), Query Frame = 3 Query: 180 VGTDSKLKSKGARAGKRTAKPEAAKDPNKPKRPPSAFFVFMEEFRKQFKEAHPNNKSVATVGKAAGEKWKSMSDDEKAPFVEKAEKRKSDYNKNMQDY---NKQLADGVNAAEENESDK 527 V T KS + A KRT K DPNKPKR SA+ F++++R++ K +P + VGK G KW+ M+++EK P+ KA+ K ++ DY K A EE++ D+ Sbjct: 4 VSTKDSKKSTASDAKKRTKK-----DPNKPKRALSAYMFFVQDYRERIKTENP-EATFGDVGKLLGIKWREMNENEKKPYEAKAKADKERADRENADYKAEGKASKKAAKADEESDDDE 116
BLAST of CK935354 vs. ExPASy Swiss-Prot
Match: SSP1B_CAEEL (FACT complex subunit ssrp1-B OS=Caenorhabditis elegans GN=hmg-3 PE=2 SV=1) HSP 1 Score: 69.3218 bits (168), Expect = 3.182e-11 Identity = 40/117 (34.19%), Postives = 61/117 (52.14%), Query Frame = 3 Query: 189 DSKLKSKGARAGKRTAKPEAAKDPNKPKRPPSAFFVFMEEFRKQFKEAHPNNKSVATVGKAAGEKWKSMSDDEKAPFVEKAEKRKSDYNKNMQDYNKQLADGVNAAEENESDKSKSE 539 + +K K + GK+T KDPN+PKR +A+ ++ R KE + ++ V K AG KWKSMS D+K + +KA + K+ Y M++Y K GV A + KS + Sbjct: 541 EKPVKEKAVKKGKKT------KDPNEPKRATTAYIIWFNANRNSMKE---DGDTLGDVAKKAGAKWKSMSADDKKEWNDKAAQDKARYEAEMKEYKKN-GGGVEKASGPSTKKSSDQ 647
BLAST of CK935354 vs. ExPASy Swiss-Prot
Match: NHP6_SCHPO (Non-histone chromosomal protein 6 OS=Schizosaccharomyces pombe GN=nhp6 PE=2 SV=1) HSP 1 Score: 67.781 bits (164), Expect = 9.260e-11 Identity = 33/89 (37.08%), Postives = 52/89 (58.43%), Query Frame = 3 Query: 228 RTAKPEAAKDPNKPKRPPSAFFVFMEEFRKQFKEAHPNNKSVATVGKAAGEKWKSMSDDEKAPFVEKAEKRKSDYNKNMQDYNKQLADG 494 R AK KDPN PKR SAF F E R++ K +P+ + +G G++WK ++ E+ P+ EKA + K Y + ++Y+ +LA+G Sbjct: 3 RAAKSSRKKDPNTPKRNMSAFMFFSIENREKMKTDNPD-ATFGQLGSLLGKRWKELTSTEREPYEEKARQDKERYERERKEYDTKLANG 90 The following BLAST results are available for this feature:
BLAST of CK935354 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 46
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Sequences
The
following sequences are available for this feature:
EST sequence >CK935354 ID=CK935354; Name=CK935354; organism=Citrus sinensis; type=EST; length=873bpback to top |