CK935354

Overview
NameCK935354
Unique NameCK935354
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length873
Libraries
Library NameType
Developing fruit 24 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CK935354 vs. ExPASy Swiss-Prot
Match: SSRP1_MOUSE (FACT complex subunit SSRP1 OS=Mus musculus GN=Ssrp1 PE=1 SV=2)

HSP 1 Score: 72.4034 bits (176), Expect = 3.759e-12
Identity = 35/113 (30.97%), Postives = 64/113 (56.64%), Query Frame = 3
Query:  204 SKGARAGKRTAKPEAAKDPNKPKRPPSAFFVFMEEFRKQFKEAHPNNKSVATVGKAAGEKWKSMSDDEKAPFVEKAEKRKSDYNKNMQDYNKQLADGVNAAEENESDKSKSEV 542
            +K  ++ +++++ +  KDPN PKRP SA+ +++   R++ K  HP   S+  + K AGE WK MS ++K  +  KAE  + +Y K M++Y     D     +  +  K K+++
Sbjct:  526 AKDRKSRRKSSEAKKGKDPNAPKRPMSAYMLWLNASREKIKSDHPGI-SITDLSKKAGEIWKGMSKEKKEEWDRKAEDARREYEKAMKEYEGGRGDSSKRDKSKKKKKVKAKM 637          
BLAST of CK935354 vs. ExPASy Swiss-Prot
Match: SSRP1_VICFA (FACT complex subunit SSRP1 OS=Vicia faba GN=SSRP1 PE=2 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 8.375e-12
Identity = 40/112 (35.71%), Postives = 57/112 (50.89%), Query Frame = 3
Query:  186 TDSKLKSKGARAGKRTAKPEAAKDPNKPKRPPSAFFVFMEEFRKQFKEAHPNNKSVATVGKAAGEKWKSMSDDEKAPFVEKAEKRKSDYNKNMQDYNKQLADGVNAAEENES 521
            + SK KSK A       K +  KDPN PKR  S F  F +  R+  K+ +P   S   VG+  GEKWK++S +EK P+  KA+  K  Y   +  Y       V++  E++S
Sbjct:  531 SSSKKKSKDADVDGVKKKQKKKKDPNAPKRALSGFMFFSQMERENLKKTNPGI-SFTDVGRVLGEKWKNLSAEEKEPYEAKAQADKKRYKDEISGYKNPQPMNVDSGNESDS 641          
BLAST of CK935354 vs. ExPASy Swiss-Prot
Match: NHP6_NEUCR (Non-histone chromosomal protein 6 OS=Neurospora crassa GN=nhp-6 PE=3 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 8.375e-12
Identity = 44/108 (40.74%), Postives = 56/108 (51.85%), Query Frame = 3
Query:  207 KGARAGKRTAKPE---AAKDPNKPKRPPSAFFVFMEEFRKQFKEAHPNNKSVATVGKAAGEKWKSMSDDEKAPFVEKAEKRKSDYNKNMQDYNKQLADGVNAAEENES 521
            K A   K T K E   A KDPN PKR  SA+  F  E R+  +E +P   S   VGK  GE+WK++SD ++AP+  KA   K  Y    Q YN +       A+E ES
Sbjct:    3 KAAAKSKTTGKVEKRRAKKDPNAPKRGLSAYMFFANEQRENVREENPG-VSFGQVGKILGERWKALSDKQRAPYEAKAAADKKRYEDEKQAYNAE-------ADEEES 102          
BLAST of CK935354 vs. ExPASy Swiss-Prot
Match: NHP6_CRYNE (Non-histone chromosomal protein 6 OS=Cryptococcus neoformans GN=NHP6 PE=3 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 1.429e-11
Identity = 42/119 (35.29%), Postives = 63/119 (52.94%), Query Frame = 3
Query:  180 VGTDSKLKSKGARAGKRTAKPEAAKDPNKPKRPPSAFFVFMEEFRKQFKEAHPNNKSVATVGKAAGEKWKSMSDDEKAPFVEKAEKRKSDYNKNMQDY---NKQLADGVNAAEENESDK 527
            V T    KS  + A KRT K     DPNKPKR  SA+  F++++R++ K  +P   +   VGK  G KW+ M+++EK P+  KA+  K   ++   DY    K       A EE++ D+
Sbjct:    4 VSTKDSKKSTASDAKKRTKK-----DPNKPKRALSAYMFFVQDYRERIKTENP-EATFGDVGKLLGIKWREMNENEKKPYEAKAKADKERADRENADYKAEGKASKKAAKADEESDDDE 116          
BLAST of CK935354 vs. ExPASy Swiss-Prot
Match: SSP1B_CAEEL (FACT complex subunit ssrp1-B OS=Caenorhabditis elegans GN=hmg-3 PE=2 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 3.182e-11
Identity = 40/117 (34.19%), Postives = 61/117 (52.14%), Query Frame = 3
Query:  189 DSKLKSKGARAGKRTAKPEAAKDPNKPKRPPSAFFVFMEEFRKQFKEAHPNNKSVATVGKAAGEKWKSMSDDEKAPFVEKAEKRKSDYNKNMQDYNKQLADGVNAAEENESDKSKSE 539
            +  +K K  + GK+T      KDPN+PKR  +A+ ++    R   KE   +  ++  V K AG KWKSMS D+K  + +KA + K+ Y   M++Y K    GV  A    + KS  +
Sbjct:  541 EKPVKEKAVKKGKKT------KDPNEPKRATTAYIIWFNANRNSMKE---DGDTLGDVAKKAGAKWKSMSADDKKEWNDKAAQDKARYEAEMKEYKKN-GGGVEKASGPSTKKSSDQ 647          
BLAST of CK935354 vs. ExPASy Swiss-Prot
Match: NHP6_SCHPO (Non-histone chromosomal protein 6 OS=Schizosaccharomyces pombe GN=nhp6 PE=2 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 9.260e-11
Identity = 33/89 (37.08%), Postives = 52/89 (58.43%), Query Frame = 3
Query:  228 RTAKPEAAKDPNKPKRPPSAFFVFMEEFRKQFKEAHPNNKSVATVGKAAGEKWKSMSDDEKAPFVEKAEKRKSDYNKNMQDYNKQLADG 494
            R AK    KDPN PKR  SAF  F  E R++ K  +P+  +   +G   G++WK ++  E+ P+ EKA + K  Y +  ++Y+ +LA+G
Sbjct:    3 RAAKSSRKKDPNTPKRNMSAFMFFSIENREKMKTDNPD-ATFGQLGSLLGKRWKELTSTEREPYEEKARQDKERYERERKEYDTKLANG 90          
The following BLAST results are available for this feature:
BLAST of CK935354 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 46
Match NameE-valueIdentityDescription
SSRP1_MOUSE3.759e-1230.97FACT complex subunit SSRP1 OS=Mus musculus GN=Ssrp... [more]
SSRP1_VICFA8.375e-1235.71FACT complex subunit SSRP1 OS=Vicia faba GN=SSRP1 ... [more]
NHP6_NEUCR8.375e-1240.74Non-histone chromosomal protein 6 OS=Neurospora cr... [more]
NHP6_CRYNE1.429e-1135.29Non-histone chromosomal protein 6 OS=Cryptococcus ... [more]
SSP1B_CAEEL3.182e-1134.19FACT complex subunit ssrp1-B OS=Caenorhabditis ele... [more]
NHP6_SCHPO9.260e-1137.08Non-histone chromosomal protein 6 OS=Schizosacchar... [more]

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Properties
Property NameValue
Genbank descriptionCGF1004562_F07 Developing fruit 24 DAFB Citrus sinensis cDNA clone T24DAB0001_IF_F07 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK935354 ID=CK935354; Name=CK935354; organism=Citrus sinensis; type=EST; length=873bp
GCGGGGAAAACAAAGCATATCCTTTTGTCTTCNNNAAACCCTAACCTCAC
CAGGTAACTCGCTGAGTCTCTCCGGCGCTGACTCATCCGAGTCACCCCGA
TTTTCACCGATTCTCACCGGTTTGCGTCATTTTTAGTGCAGGATTCATCA
TGAAAGGAGGCAGATCGAAAGCTGACGCGGTAGGAACTGATAGCAAGCTG
AAGAGCAAAGGGGCGAGAGCCGGCAAGCGAACAGCGAAGCCCGAGGCTGC
GAAAGATCCAAACAAGCCGAAGAGGCCTCCTAGTGCTTTCTTCGTTTTCA
TGGAGGAGTTCAGGAAGCAGTTCAAAGAAGCTCATCCTAACAATAAATCT
GTTGCTACTGTTGGCAAAGCTGCTGGAGAAAAATGGAAGTCAATGTCAGA
TGATGAGAAAGCGCCATTTGTTGAAAAGGCTGAGAAAAGAAAGTCTGATT
ACAACAAGAACATGCAGGATTACAACAAGCAGTTGGCTGATGGAGTAAAT
GCTGCTGAGGAAAATGAATCTGACAAGTCCAAGTCTGAAGTGAATGATGA
GGATGATGAAGAAGGCAGTGGAGAGGAGGAAGATGATGATTAGAGAATGG
CAGCGAAGGATTCAAAAAGTTGAAGTTTTAGCAATCTAGTAGAATTGCTT
ATAACATGATAACCCTTAGCCTTTTAGATTAGATTAGGAAAGAAATCAAG
TGTTGTTCAGGATTTACTGAAGCACCATATCGATGGATACGTACCTAAAT
GTTCTCTTAAGTCTTTAATCATCTAGTTTCAACATTTATATGTATTATTT
ATTTGTCTATCTTGTTGCTTTTATCAGTTATTTTTCATGTTGGTGCACAT
TGGCCACTGCTTGTTGGTTGCTT
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