CK935488

Overview
NameCK935488
Unique NameCK935488
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length673
Libraries
Library NameType
Developing fruit 24 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CK935488_ssr10 microsatellite CK935488_ssr10:10..21. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig1978 contig Csv1_Contig1978:554..1226. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CK935488 vs. ExPASy Swiss-Prot
Match: SUI1_ANOGA (Protein translation factor SUI1 homolog OS=Anopheles gambiae GN=AGAP006459 PE=3 SV=1)

HSP 1 Score: 105.916 bits (263), Expect = 1.964e-22
Identity = 50/103 (48.54%), Postives = 72/103 (69.90%), Query Frame = 3
Query:  159 SYDPFAD-IKDSLAPGDKGYVHLRVQQRNGKKCLTTVQGLKEDFGYQKILKDLKKEFCCNGNVVNDKVLGKVIQLQGDHRKNVMIFLVKSKIVDKDRIKIHGF 464
            ++DPFAD IK +      G VH+R+QQRNG+K LTTVQGL  ++  +KI++  KKEF CNG V+     G+V+QLQGD R+N+  +L KS +   +++K+HGF
Sbjct:    8 TFDPFADAIKGADYDVQDGLVHIRIQQRNGRKTLTTVQGLSAEYDLKKIVRACKKEFACNGTVIEHPEYGEVLQLQGDQRENICQWLTKSGLAKPEQLKVHGF 110          
BLAST of CK935488 vs. ExPASy Swiss-Prot
Match: SUI1_DROME (Protein translation factor SUI1 homolog OS=Drosophila melanogaster GN=CG17737 PE=1 SV=1)

HSP 1 Score: 103.99 bits (258), Expect = 7.465e-22
Identity = 50/101 (49.50%), Postives = 69/101 (68.32%), Query Frame = 3
Query:  165 DPFAD-IKDSLAPGDKGYVHLRVQQRNGKKCLTTVQGLKEDFGYQKILKDLKKEFCCNGNVVNDKVLGKVIQLQGDHRKNVMIFLVKSKIVDKDRIKIHGF 464
            DPFAD IK +      G VH+R+QQRNG+K LTTVQGL  ++  +KI++  KKEF CNG V+     G+V+QLQGD R+N+  +L K  +   D++K+HGF
Sbjct:   10 DPFADAIKGNDDDIQDGLVHIRIQQRNGRKTLTTVQGLSAEYDLKKIVRSCKKEFACNGTVIEHPEYGEVLQLQGDQRENICQWLTKVGLAKPDQLKVHGF 110          
BLAST of CK935488 vs. ExPASy Swiss-Prot
Match: EIF1_CHICK (Eukaryotic translation initiation factor 1 (Fragment) OS=Gallus gallus GN=EIF1 PE=3 SV=1)

HSP 1 Score: 93.2041 bits (230), Expect = 1.318e-18
Identity = 41/79 (51.90%), Postives = 58/79 (73.42%), Query Frame = 3
Query:  228 VQQRNGKKCLTTVQGLKEDFGYQKILKDLKKEFCCNGNVVNDKVLGKVIQLQGDHRKNVMIFLVKSKIVDKDRIKIHGF 464
            +QQRNG+K LTTVQG+ +D+  +K++K  KK+F CNG V+     G+VIQLQGD RKN+  FLV+  +   D++K+HGF
Sbjct:    1 IQQRNGRKTLTTVQGIADDYDKKKLVKAFKKKFACNGTVIEHPEYGEVIQLQGDQRKNICQFLVEIGLAKDDQLKVHGF 79          
The following BLAST results are available for this feature:
BLAST of CK935488 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 23
Match NameE-valueIdentityDescription
SUI1_ANOGA1.964e-2248.54Protein translation factor SUI1 homolog OS=Anophel... [more]
SUI1_DROME7.465e-2249.50Protein translation factor SUI1 homolog OS=Drosoph... [more]
EIF1_CHICK1.318e-1851.90Eukaryotic translation initiation factor 1 (Fragme... [more]

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Properties
Property NameValue
Genbank descriptionCGF1004555_B10 Developing fruit 24 DAFB Citrus sinensis cDNA clone T24DAB0004_IVF_B10 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK935488 ID=CK935488; Name=CK935488; organism=Citrus sinensis; type=EST; length=673bp
GGGGATAATACAAACAAACAATTAGCTCTCGAAGTCTCTTTACTTCTCAC
ACTTTCATTTCAGTACTTTTGCACAGGAAACTTCTAAGCTGACCTTCGAA
GGTTTTAGGTCTTCTATAAGCAAAGTACATGGTTGACATAGACAGCCAGA
TTCCAACTTCCTATGATCCCTTTGCTGATATAAAGGACTCCCTTGCCCCA
GGTGACAAAGGGTACGTGCATCTCCGCGTACAGCAGAGGAATGGAAAGAA
GTGCTTAACAACTGTTCAAGGACTTAAAGAGGATTTTGGCTACCAGAAGA
TCCTCAAGGACCTCAAAAAGGAGTTCTGTTGTAACGGGAATGTTGTCAAT
GACAAAGTTCTCGGGAAGGTGATTCAGCTTCAAGGTGATCATCGGAAGAA
TGTTATGATCTTTCTCGTTAAGAGTAAGATTGTGGACAAGGATCGTATCA
AGATTCATGGTTTCTAAACAAATGTGGTGATTAATACATATGGTTATGGT
ATAATATATGTGGTCTTATGTGATCTGCAGAGCATATCTGTAGTCTGTTC
TTGTTGAGGTTTTCTGTATTTCTCTGGACTTGGATTTAAGATTTTCTGTT
CTCAAGTTATGGATAATGATAATAAAAGTTATGGATATTTTTATAAAAAA
AAAAAAAAAAAAAAAAAAAAAAA
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