CK935606

Overview
NameCK935606
Unique NameCK935606
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length919
Libraries
Library NameType
Developing fruit 24 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CK935606 vs. ExPASy Swiss-Prot
Match: PSB5_CHICK (Proteasome subunit beta type-5 (Fragment) OS=Gallus gallus GN=PSMB5 PE=2 SV=2)

HSP 1 Score: 153.68 bits (387), Expect = 1.267e-50
Identity = 73/107 (68.22%), Postives = 88/107 (82.24%), Query Frame = 1
Query:  226 GTTTLAFIFKEGVMVAADSRASMGGYISSQSVKKIIEINPYMLGTMAGGAADCQFWHRNLGIKCRLHELANKRRISVTGASKLLANILYSYRGMGLSVGTMIAGWDE 546
            GTTTLAF F  GV+VA DSRA+ G YI+SQ+V+K+IEINP +LGTMAGGAADC FW R L  +CR++EL NK  ISV  ASKLLAN++Y Y+GMGLS+GTMI GWD+
Sbjct:   55 GTTTLAFKFAHGVVVAVDSRATAGSYIASQTVQKVIEINPSLLGTMAGGAADCSFWERLLARQCRVYELRNKEPISVAAASKLLANMVYQYKGMGLSMGTMICGWDK 161          

HSP 2 Score: 68.1662 bits (165), Expect = 1.267e-50
Identity = 34/62 (54.84%), Postives = 40/62 (64.52%), Query Frame = 3
Query:  633 QGPGLYYVDSEGGRLKGTRFSVGSGSPYAYGVLDSGYKFDMSIXXXXXXXXXXIYHATFRDA 818
            +GPGLYYVDSEG R+ G  F+VGSGS YAYGVLD G + DM+           I+ A  RDA
Sbjct:  162 RGPGLYYVDSEGTRIPGEAFAVGSGSSYAYGVLDGGRRPDMATDEALELARRAIFQAARRDA 223          
BLAST of CK935606 vs. ExPASy Swiss-Prot
Match: PSB5_YEAST (Proteasome component PRE2 OS=Saccharomyces cerevisiae GN=PRE2 PE=1 SV=3)

HSP 1 Score: 152.91 bits (385), Expect = 2.802e-50
Identity = 71/110 (64.55%), Postives = 91/110 (82.73%), Query Frame = 1
Query:  211 LKHAKGTTTLAFIFKEGVMVAADSRASMGGYISSQSVKKIIEINPYMLGTMAGGAADCQFWHRNLGIKCRLHELANKRRISVTGASKLLANILYSYRGMGLSVGTMIAGW 540
            +K A GTTTLAF F+ G++VA DSRA+ G +++SQ+VKK+IEINP++LGTMAGGAADCQFW   LG +CRLHEL  K RISV  ASK+L+N++Y Y+G GLS+GTMI G+
Sbjct:   70 IKIAHGTTTLAFRFQGGIIVAVDSRATAGNWVASQTVKKVIEINPFLLGTMAGGAADCQFWETWLGSQCRLHELREKERISVAAASKILSNLVYQYKGAGLSMGTMICGY 179          

HSP 2 Score: 67.781 bits (164), Expect = 2.802e-50
Identity = 33/62 (53.23%), Postives = 40/62 (64.52%), Query Frame = 3
Query:  633 QGPGLYYVDSEGGRLKGTRFSVGSGSPYAYGVLDSGYKFDMSIXXXXXXXXXXIYHATFRDA 818
            +GP +YYVDS+G RLKG  F VGSG  +AYGVLDS YK+D+S+          I  A  RDA
Sbjct:  183 EGPTIYYVDSDGTRLKGDIFCVGSGQTFAYGVLDSNYKWDLSVEDALYLGKRSILAAAHRDA 244          
BLAST of CK935606 vs. ExPASy Swiss-Prot
Match: PSB8_BOVIN (Proteasome subunit beta type-8 OS=Bos taurus GN=PSMB8 PE=1 SV=2)

HSP 1 Score: 146.362 bits (368), Expect = 1.375e-49
Identity = 70/117 (59.83%), Postives = 91/117 (77.78%), Query Frame = 1
Query:  196 DTKATLKHAKGTTTLAFIFKEGVMVAADSRASMGGYISSQSVKKIIEINPYMLGTMAGGAADCQFWHRNLGIKCRLHELANKRRISVTGASKLLANILYSYRGMGLSVGTMIAGWDE 546
            ++K  ++ A GTTTLAF F+ GV+VA DSRAS G YI++  V K+IEINPY+LGTM+G AADC +W R L  +CRL+ L N  RISV+ ASKLL+N++  YRGMGLS+G+MI GWD+
Sbjct:   62 ESKVQIEMAHGTTTLAFKFQHGVIVAVDSRASAGNYIATLKVNKVIEINPYLLGTMSGCAADCLYWERLLAKECRLYYLRNGERISVSAASKLLSNMMCQYRGMGLSMGSMICGWDK 178          

HSP 2 Score: 72.0182 bits (175), Expect = 1.375e-49
Identity = 34/62 (54.84%), Postives = 41/62 (66.13%), Query Frame = 3
Query:  633 QGPGLYYVDSEGGRLKGTRFSVGSGSPYAYGVLDSGYKFDMSIXXXXXXXXXXIYHATFRDA 818
            +GPGLYYVD  G RL G  FS GSG+ +AYGV+DSGY+ D+SI          I HAT RD+
Sbjct:  179 KGPGLYYVDENGTRLSGNMFSTGSGNSHAYGVMDSGYRPDLSIEEAYDLGRRAIVHATHRDS 240          
BLAST of CK935606 vs. ExPASy Swiss-Prot
Match: PSB8_RAT (Proteasome subunit beta type-8 OS=Rattus norvegicus GN=Psmb8 PE=1 SV=3)

HSP 1 Score: 148.288 bits (373), Expect = 3.045e-49
Identity = 71/118 (60.17%), Postives = 92/118 (77.97%), Query Frame = 1
Query:  193 KDTKATLKHAKGTTTLAFIFKEGVMVAADSRASMGGYISSQSVKKIIEINPYMLGTMAGGAADCQFWHRNLGIKCRLHELANKRRISVTGASKLLANILYSYRGMGLSVGTMIAGWDE 546
            ++ K  ++ A GTTTLAF F+ GV+VA DSRAS G YI++  V K+IEINPY+LGTM+G AADCQ+W R L  +CRL+ L N  RISV+ ASKLL+N++  YRGMGLS+G+MI GWD+
Sbjct:   61 QERKVQIEMAHGTTTLAFKFQHGVIVAVDSRASAGSYIATIRVNKVIEINPYLLGTMSGCAADCQYWERLLAKECRLYYLRNGERISVSAASKLLSNMMLQYRGMGLSMGSMICGWDK 178          

HSP 2 Score: 68.9366 bits (167), Expect = 3.045e-49
Identity = 33/62 (53.23%), Postives = 40/62 (64.52%), Query Frame = 3
Query:  633 QGPGLYYVDSEGGRLKGTRFSVGSGSPYAYGVLDSGYKFDMSIXXXXXXXXXXIYHATFRDA 818
            +GPGLYYVD  G RL G  FS GSG+ YAYGV+DSGY+ D+S           I +AT RD+
Sbjct:  179 KGPGLYYVDDNGTRLSGQMFSTGSGNTYAYGVMDSGYRQDLSPEEAYDLARRAIVYATHRDS 240          
BLAST of CK935606 vs. ExPASy Swiss-Prot
Match: PSB8_MOUSE (Proteasome subunit beta type-8 OS=Mus musculus GN=Psmb8 PE=1 SV=2)

HSP 1 Score: 146.747 bits (369), Expect = 1.493e-48
Identity = 70/118 (59.32%), Postives = 91/118 (77.12%), Query Frame = 1
Query:  193 KDTKATLKHAKGTTTLAFIFKEGVMVAADSRASMGGYISSQSVKKIIEINPYMLGTMAGGAADCQFWHRNLGIKCRLHELANKRRISVTGASKLLANILYSYRGMGLSVGTMIAGWDE 546
            ++    ++ A GTTTLAF F+ GV+VA DSRA+ G YISS  + K+IEINPY+LGTM+G AADCQ+W R L  +CRL+ L N  RISV+ ASKLL+N++  YRGMGLS+G+MI GWD+
Sbjct:   61 QERNVQIEMAHGTTTLAFKFQHGVIVAVDSRATAGSYISSLRMNKVIEINPYLLGTMSGCAADCQYWERLLAKECRLYYLRNGERISVSAASKLLSNMMLQYRGMGLSMGSMICGWDK 178          

HSP 2 Score: 68.1662 bits (165), Expect = 1.493e-48
Identity = 33/61 (54.10%), Postives = 39/61 (63.93%), Query Frame = 3
Query:  633 QGPGLYYVDSEGGRLKGTRFSVGSGSPYAYGVLDSGYKFDMSIXXXXXXXXXXIYHATFRD 815
            +GPGLYYVD  G RL G  FS GSG+ YAYGV+DSGY+ D+S           I +AT RD
Sbjct:  179 KGPGLYYVDDNGTRLSGQMFSTGSGNTYAYGVMDSGYRQDLSPEEAYDLGRRAIAYATHRD 239          
BLAST of CK935606 vs. ExPASy Swiss-Prot
Match: PSB8_HUMAN (Proteasome subunit beta type-8 OS=Homo sapiens GN=PSMB8 PE=1 SV=2)

HSP 1 Score: 145.591 bits (366), Expect = 9.538e-48
Identity = 70/112 (62.50%), Postives = 88/112 (78.57%), Query Frame = 1
Query:  211 LKHAKGTTTLAFIFKEGVMVAADSRASMGGYISSQSVKKIIEINPYMLGTMAGGAADCQFWHRNLGIKCRLHELANKRRISVTGASKLLANILYSYRGMGLSVGTMIAGWDE 546
            ++ A GTTTLAF F+ GV+ A DSRAS G YIS+  V K+IEINPY+LGTM+G AADCQ+W R L  +CRL+ L N  RISV+ ASKLL+N++  YRGMGLS+G+MI GWD+
Sbjct:   67 IEMAHGTTTLAFKFQHGVIAAVDSRASAGSYISALRVNKVIEINPYLLGTMSGCAADCQYWERLLAKECRLYYLRNGERISVSAASKLLSNMMCQYRGMGLSMGSMICGWDK 178          

HSP 2 Score: 66.6254 bits (161), Expect = 9.538e-48
Identity = 32/62 (51.61%), Postives = 40/62 (64.52%), Query Frame = 3
Query:  633 QGPGLYYVDSEGGRLKGTRFSVGSGSPYAYGVLDSGYKFDMSIXXXXXXXXXXIYHATFRDA 818
            +GPGLYYVD  G RL G  FS GSG+ YAYGV+DSGY+ ++S           I +AT RD+
Sbjct:  179 KGPGLYYVDEHGTRLSGNMFSTGSGNTYAYGVMDSGYRPNLSPEEAYDLGRRAIAYATHRDS 240          
BLAST of CK935606 vs. ExPASy Swiss-Prot
Match: PSB8_CANFA (Proteasome subunit beta type-8 OS=Canis familiaris GN=PSMB8 PE=1 SV=1)

HSP 1 Score: 144.05 bits (362), Expect = 2.112e-47
Identity = 71/119 (59.66%), Postives = 91/119 (76.47%), Query Frame = 1
Query:  190 QKDTKATLKHAKGTTTLAFIFKEGVMVAADSRASMGGYISSQSVKKIIEINPYMLGTMAGGAADCQFWHRNLGIKCRLHELANKRRISVTGASKLLANILYSYRGMGLSVGTMIAGWDE 546
            +K+ +  + H  GTTTLAF F+ GV+VA DSRA+ G YISS  V K+IEINP +LGTM+G AADCQ+W R L  +CRL+ L N  RISV+ ASKLL+N++Y YRGM LS+G+MI GWD+
Sbjct:   62 EKNIRKEMVH--GTTTLAFKFQHGVIVAVDSRATAGNYISSSRVNKVIEINPSLLGTMSGCAADCQYWERLLAKECRLYYLRNGERISVSAASKLLSNMVYQYRGMDLSMGSMICGWDK 178          

HSP 2 Score: 67.0106 bits (162), Expect = 2.112e-47
Identity = 33/62 (53.23%), Postives = 39/62 (62.90%), Query Frame = 3
Query:  633 QGPGLYYVDSEGGRLKGTRFSVGSGSPYAYGVLDSGYKFDMSIXXXXXXXXXXIYHATFRDA 818
            +GPGLYYVD  G RL G  FS GSGS YAYGV+DSGY+  +S           I +AT RD+
Sbjct:  179 KGPGLYYVDQNGTRLSGNMFSTGSGSTYAYGVMDSGYQPSLSPEEAYELGRRAITYATHRDS 240          
BLAST of CK935606 vs. ExPASy Swiss-Prot
Match: PSB8_PIG (Proteasome subunit beta type-8 (Fragment) OS=Sus scrofa GN=PSMB8 PE=1 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 1.552e-24
Identity = 34/61 (55.74%), Postives = 41/61 (67.21%), Query Frame = 3
Query:  633 QGPGLYYVDSEGGRLKGTRFSVGSGSPYAYGVLDSGYKFDMSIXXXXXXXXXXIYHATFRD 815
            +GPGLYYVD  G RL G  FS GSG+ YAYGV+DSG+++D+SI          I HAT RD
Sbjct:   44 KGPGLYYVDENGTRLSGNMFSTGSGNTYAYGVMDSGHRYDLSIEEAYDLGRRAIVHATHRD 104          

HSP 2 Score: 60.077 bits (144), Expect = 1.552e-24
Identity = 27/43 (62.79%), Postives = 35/43 (81.40%), Query Frame = 1
Query:  418 RLHELANKRRISVTGASKLLANILYSYRGMGLSVGTMIAGWDE 546
            RL+ L N  RISV+ ASKL +N++Y YRGMGLS+G+MI GWD+
Sbjct:    1 RLYYLRNGARISVSAASKLXSNMMYQYRGMGLSMGSMICGWDK 43          
BLAST of CK935606 vs. ExPASy Swiss-Prot
Match: PSMB_METTE (Proteasome subunit beta OS=Methanosarcina thermophila GN=psmB PE=3 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 2.364e-21
Identity = 33/111 (29.73%), Postives = 67/111 (60.36%), Query Frame = 1
Query:  214 KHAKGTTTLAFIFKEGVMVAADSRASMGGYISSQSVKKIIEINPYMLGTMAGGAADCQFWHRNLGIKCRLHELANKRRISVTGASKLLANILYSYRGMGLSVGTMIAGWDE 546
            K+ KGTTT+  +  +G+++A++ RA+MG +I+S++ KK+ +I+  +  T AG   D Q   R + ++ +L+++     +++ G + L++N L   R   + V  +I G D+
Sbjct:    5 KYLKGTTTVGVVCTDGIVLASEQRATMGHFIASKTAKKVYQIDDLVGMTTAGSVGDAQQLVRLVSVESQLYKMRRDESMTIKGITTLMSNFLSRNRYYPMMVQLLIGGVDK 115          

HSP 2 Score: 55.8398 bits (133), Expect = 2.364e-21
Identity = 30/73 (41.10%), Postives = 46/73 (63.01%), Query Frame = 3
Query:  612 ELFVRGLQ--GPGLYYVDSEGGRLKGTRFSV-GSGSPYAYGVLDSGYKFDMSIXXXXXXXXXXIYHATFRDAA 821
            +L + G+   GPG+Y +D+ GG ++ TR S  GSGSP AYGVL+  Y+ +M++          I++AT RD+A
Sbjct:  107 QLLIGGVDKNGPGIYSLDAMGGSIEETRISATGSGSPMAYGVLEDQYRENMTVKEGLDLAIRAIHNATKRDSA 179          
BLAST of CK935606 vs. ExPASy Swiss-Prot
Match: PSB11_MOUSE (Proteasome subunit beta type-11 OS=Mus musculus GN=Psmb11 PE=1 SV=1)

HSP 1 Score: 102.834 bits (255), Expect = 2.809e-21
Identity = 50/110 (45.45%), Postives = 73/110 (66.36%), Query Frame = 1
Query:  220 AKGTTTLAFIFKEGVMVAADSRASMGGYISSQSVKKIIEINPYMLGTMAGGAADCQFWHRNLGIKCRLHELANKRRISVTGASKLLANILYSYRGMGLSVGTMIAGWDET 549
            A GTTTLAF F+ GV+ AAD+R+S G Y++  + +K+I ++  +LGT +G +ADC  W+R L  + RL EL   +  SV G +KLLA ++  YRG+ L V T + GWD +
Sbjct:   47 AHGTTTLAFRFRHGVIAAADTRSSCGSYVACPASRKVIPVHQRLLGTTSGTSADCATWYRVLRRELRLRELREGQLPSVAGTAKLLAAMMSCYRGLDLCVATALCGWDHS 156          

HSP 2 Score: 72.4034 bits (176), Expect = 4.083e-12
Identity = 38/73 (52.05%), Postives = 45/73 (61.64%), Query Frame = 3
Query:  600 CVSFELFVRGLQGPGLYYVDSEGGRLKGTRFSVGSGSPYAYGVLDSGYKFDMSIXXXXXXXXXXIYHATFRDA 818
            CV+  L      GP L+YV S+G  L+G  FSVGSGSPYAYGVLD GY +DM+I          + HAT RDA
Sbjct:  145 CVATALCGWDHSGPALFYVYSDGTCLQGDIFSVGSGSPYAYGVLDRGYHYDMTIQEAYTLARCAVAHATHRDA 217          
The following BLAST results are available for this feature:
BLAST of CK935606 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 31
Match NameE-valueIdentityDescription
PSB5_CHICK1.267e-5068.22Proteasome subunit beta type-5 (Fragment) OS=Gallu... [more]
PSB5_YEAST2.802e-5064.55Proteasome component PRE2 OS=Saccharomyces cerevis... [more]
PSB8_BOVIN1.375e-4959.83Proteasome subunit beta type-8 OS=Bos taurus GN=PS... [more]
PSB8_RAT3.045e-4960.17Proteasome subunit beta type-8 OS=Rattus norvegicu... [more]
PSB8_MOUSE1.493e-4859.32Proteasome subunit beta type-8 OS=Mus musculus GN=... [more]
PSB8_HUMAN9.538e-4862.50Proteasome subunit beta type-8 OS=Homo sapiens GN=... [more]
PSB8_CANFA2.112e-4759.66Proteasome subunit beta type-8 OS=Canis familiaris... [more]
PSB8_PIG1.552e-2455.74Proteasome subunit beta type-8 (Fragment) OS=Sus s... [more]
PSMB_METTE2.364e-2129.73Proteasome subunit beta OS=Methanosarcina thermoph... [more]
PSB11_MOUSE2.809e-2145.45Proteasome subunit beta type-11 OS=Mus musculus GN... [more]

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Properties
Property NameValue
Genbank descriptionCGF1004553_F08 Developing fruit 24 DAFB Citrus sinensis cDNA clone T24DAB0004_IIF_F08 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK935606 ID=CK935606; Name=CK935606; organism=Citrus sinensis; type=EST; length=919bp
GGGGGATTTCTGCTTGCAACTCTCAGTTACATTGTCGTTTAATCTTATAT
TCAGTGCGTAGACATGAAGCTCGACACTAGCGGTCTTGAGTCCACTTCTC
CTTTTTTCGGGTCAGGCGACGAGCTCTGTCCTGAGTTATCAGCTGCACCA
TCATTTTCTCTACCTCTTTCTACTGATTTTGATGAATTTCAAAAGGACAC
TAAAGCTACACTGAAGCATGCCAAGGGGACAACCACACTTGCTTTTATCT
TTAAAGAGGGTGTTATGGTGGCTGCTGATTCTCGAGCTAGCATGGGAGGC
TATATCTCATCACAGTCTGTGAAGAAAATTATAGAAATCAATCCTTACAT
GCTTGGCACAATGGCTGGAGGAGCAGCCGATTGCCAGTTTTGGCACAGAA
ATCTGGGCATTAAGTGCCGACTACATGAATTGGCCAACAAGCGTAGAATT
TCAGTTACAGGGGCATCAAAGCTGCTGGCCAACATTCTCTACTCTTATCG
TGGAATGGGGTTGTCTGTTGGGACTATGATTGCTGGATGGGATGAGACTG
TAAGGGAATTCATGTTTCAGGTTTTTTGTTTTGCTTTTGCATCTCTGATT
GCGTCTCTTTTGAGCTGTTTGTCCGTGGGTTGCAGGGTCCTGGGCTGTAT
TATGTGGACAGTGAAGGAGGGAGGCTCAAAGGAACACGGTTCTCTGTGGG
ATCAGGTTCGCCATATGCTTATGGTGTATTGGACAGCGGGTACAAGTTTG
ACATGTCTATTGAAGAAGCTGCGGAGTTGGCTAGAAGAGCTATTTATCAT
GCGACATTCAGAGATGCAGCCAGNTGGTGGTGTTGCAAGCGTTTATTATG
TGGGACNNNNNGGATGGAAGAAGCTGTCTGGTGATGATGTTGGAGAGCTT
CACTACCATTATTATCCAG
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