CK935606

Overview
NameCK935606
Unique NameCK935606
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length919
Libraries
Library NameType
Developing fruit 24 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CK935606 vs. ExPASy Swiss-Prot
Match: PSB11_HUMAN (Proteasome subunit beta type-11 OS=Homo sapiens GN=PSMB11 PE=2 SV=1)

HSP 1 Score: 102.064 bits (253), Expect = 4.792e-21
Identity = 50/116 (43.10%), Postives = 75/116 (64.66%), Query Frame = 1
Query:  220 AKGTTTLAFIFKEGVMVAADSRASMGGYISSQSVKKIIEINPYMLGTMAGGAADCQFWHRNLGIKCRLHELANKRRISVTGASKLLANILYSYRGMGLSVGTMIAGWDETVREFMF 567
            A GTTTLAF F+ GV+ AAD+R+S G Y++  +  K+I ++ ++LGT +G +ADC  W+R L  + RL EL   +  SV  A+KLL+ ++  YRG+ L V T + GWD +  E  +
Sbjct:   47 AHGTTTLAFRFRHGVIAAADTRSSCGSYVACPASCKVIPVHQHLLGTTSGTSADCATWYRVLQRELRLRELREGQLPSVASAAKLLSAMMSQYRGLDLCVATALCGWDRSGPELFY 162          

HSP 2 Score: 75.485 bits (184), Expect = 4.824e-13
Identity = 39/73 (53.42%), Postives = 46/73 (63.01%), Query Frame = 3
Query:  600 CVSFELFVRGLQGPGLYYVDSEGGRLKGTRFSVGSGSPYAYGVLDSGYKFDMSIXXXXXXXXXXIYHATFRDA 818
            CV+  L      GP L+YV S+G RL+G  FSVGSGSPYAYGVLD GY++DMS           + HAT RDA
Sbjct:  145 CVATALCGWDRSGPELFYVYSDGTRLQGDIFSVGSGSPYAYGVLDRGYRYDMSTQEAYALARCAVAHATHRDA 217          
BLAST of CK935606 vs. ExPASy Swiss-Prot
Match: PSMB_METTH (Proteasome subunit beta OS=Methanobacterium thermoautotrophicum GN=psmB PE=3 SV=1)

HSP 1 Score: 78.5666 bits (192), Expect = 2.066e-19
Identity = 42/108 (38.89%), Postives = 64/108 (59.26%), Query Frame = 1
Query:  223 KGTTTLAFIFKEGVMVAADSRASMGGYISSQSVKKIIEINPYMLGTMAGGAADCQFWHRNLGIKCRLHELANKRRISVTGASKLLANILYSYRGMGLSVGTMIAGWDE 546
            KGTTT+    K+GV+ A + RASMG  I+ ++  KI +I+ ++  T+AG  AD Q   + L  +  L+ + N  +IS+  A+ L ANIL+S R     V T++ G DE
Sbjct:    8 KGTTTVGITCKDGVVFATERRASMGNLIAHKATDKIFKIDEHIAATIAGSVADAQSLMKYLKAEAALYRMRNSEKISIEAAAALAANILHSSRFYPFIVQTLLGGVDE 115          

HSP 2 Score: 38.5058 bits (88), Expect = 2.066e-19
Identity = 21/60 (35.00%), Postives = 28/60 (46.67%), Query Frame = 3
Query:  636 GPGLYYVDSEGGRLKGTRFSVGSGSPYAYGVLDSGYKFDMSIXXXXXXXXXXIYHATFRD 815
            G  +Y +D  GG +     S GSGSP AYGVL+  Y  ++ +          I  A  RD
Sbjct:  117 GAKIYSLDPSGGMIPDKFVSTGSGSPVAYGVLEDRYSDELYVDEAVDVAIRAIKSAMERD 176          
BLAST of CK935606 vs. ExPASy Swiss-Prot
Match: PSMB_ARCFU (Proteasome subunit beta OS=Archaeoglobus fulgidus GN=psmB PE=1 SV=1)

HSP 1 Score: 79.7221 bits (195), Expect = 9.994e-19
Identity = 42/107 (39.25%), Postives = 65/107 (60.75%), Query Frame = 1
Query:  223 KGTTTLAFIFKEGVMVAADSRASMGGYISSQSVKKIIEINPYMLGTMAGGAADCQFWHRNLGIKCRLHELANKRRISVTGASKLLANILYSYRGMGLSVGTMIAGWD 543
            KGTTT+  + K+GV++A + RA+MG +I+S++ KKI +I   M  T AG   D QF  R + I+  L+E+  +R+ +V   + L +N+L SYR     V  +I G D
Sbjct:   10 KGTTTVGLVCKDGVVMATEKRATMGNFIASKAAKKIYQIADRMAMTTAGSVGDAQFLARIIKIEANLYEIRRERKPTVRAIATLTSNLLNSYRYFPYLVQLLIGGID 116          

HSP 2 Score: 35.039 bits (79), Expect = 9.994e-19
Identity = 22/73 (30.14%), Postives = 37/73 (50.68%), Query Frame = 3
Query:  612 ELFVRGL--QGPGLYYVDSEGGRLKGTRF-SVGSGSPYAYGVLDSGYKFDMSIXXXXXXXXXXIYHATFRDAA 821
            +L + G+  +G  +Y +D  GG ++     + GSGS  AYGVL+  +  ++ +          IY A  RD+A
Sbjct:  109 QLLIGGIDSEGKSIYSIDPIGGAIEEKDIVATGSGSLTAYGVLEDRFTPEIGVDEAVELAVRAIYSAMKRDSA 181          
BLAST of CK935606 vs. ExPASy Swiss-Prot
Match: PSMB_METJA (Proteasome subunit beta OS=Methanocaldococcus jannaschii GN=psmB PE=1 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 1.379e-17
Identity = 37/107 (34.58%), Postives = 60/107 (56.07%), Query Frame = 1
Query:  223 KGTTTLAFIFKEGVMVAADSRASMGGYISSQSVKKIIEINPYMLGTMAGGAADCQFWHRNLGIKCRLHELANKRRISVTGASKLLANILYSYRGMGLSVGTMIAGWD 543
            KGTTT+  I  + V++A D RAS+G  ++ +  KK+ +I+ Y+  T+AG   D Q   R L  + +L+++   R I     + LL+NIL+S R        +I G+D
Sbjct:    5 KGTTTVGLICDDAVILATDKRASLGNLVADKEAKKLYKIDDYIAMTIAGSVGDAQAIVRLLIAEAKLYKMRTGRNIPPLACATLLSNILHSSRMFPFLTQIIIGGYD 111          

HSP 2 Score: 42.3578 bits (98), Expect = 1.379e-17
Identity = 22/45 (48.89%), Postives = 30/45 (66.67%), Query Frame = 3
Query:  630 LQGPGLYYVDSEGGRLKGTRFSV-GSGSPYAYGVLDSGYKFDMSI 761
            L+G  L+ +D  GG  +   F+  GSGSP AYGVL++GY  DMS+
Sbjct:  113 LEGAKLFSLDPLGGMNEEKTFTATGSGSPIAYGVLEAGYDRDMSV 157          
BLAST of CK935606 vs. ExPASy Swiss-Prot
Match: PSMB_PYRAB (Proteasome subunit beta OS=Pyrococcus abyssi GN=psmB PE=3 SV=1)

HSP 1 Score: 63.5438 bits (153), Expect = 4.436e-15
Identity = 37/111 (33.33%), Postives = 63/111 (56.76%), Query Frame = 1
Query:  223 KGTTTLAFIFKEGVMVAADSRASMGGYISSQSVKKIIEINPYMLGTMAGGAADCQFWHRNLGIKCRLHELANKRRISVTGASKLLANILYSYRGMGLSVGTMIAGWDETVR 555
            KGTTT+  +  +GV++AAD RAS+G  + +++V KI +I+ ++    AG   D     R L  + +L+   + +R+SV   + LLAN+L   R +      ++ G+DE  R
Sbjct:    9 KGTTTVGIVCSDGVVLAADRRASLGNIVYAKNVTKIHKIDEHLAIAGAGDVGDILNLVRLLRAEAKLYYAQSGKRMSVKALATLLANMLNGARMLPYLAWFLVGGFDEKPR 119          

HSP 2 Score: 38.891 bits (89), Expect = 4.436e-15
Identity = 22/59 (37.29%), Postives = 28/59 (47.46%), Query Frame = 3
Query:  639 PGLYYVDSEGGRLKGTRFSVGSGSPYAYGVLDSGYKFDMSIXXXXXXXXXXIYHATFRD 815
            P LY VD  GG  +    + GSG  +AY VLDS Y+ D+ +          I  A  RD
Sbjct:  118 PRLYSVDMMGGITEDKYVAAGSGMEFAYSVLDSEYREDLKVREGIKIAVEAINSAIKRD 176          
BLAST of CK935606 vs. ExPASy Swiss-Prot
Match: PSMB_PYRFU (Proteasome subunit beta OS=Pyrococcus furiosus GN=psmB PE=3 SV=1)

HSP 1 Score: 64.3142 bits (155), Expect = 7.492e-15
Identity = 40/113 (35.40%), Postives = 63/113 (55.75%), Query Frame = 1
Query:  223 KGTTTLAFIFKEGVMVAADSRASMGGYISSQSVKKIIEINPYMLGTMAGGAADCQFWHRNLGIKCRLHELANKRRISVTGASKLLANILYSYRGMGLSVGTMIAGWDETVREF 561
            KGTTT+  + KEGV++AAD+RAS+G  I +++V KI +I+ ++    AG   D     R L  +  L++    + +SV   + LLANIL   +        ++ G+DE  R F
Sbjct:    9 KGTTTVGLVCKEGVVLAADTRASLGNIIYAKNVTKIHKIDEHLAIAGAGDVGDILNLVRLLKAEANLYKSTVGKEMSVKALATLLANILNGSKYFPYLGWFLVGGYDEKPRLF 121          

HSP 2 Score: 37.3502 bits (85), Expect = 7.492e-15
Identity = 17/41 (41.46%), Postives = 25/41 (60.98%), Query Frame = 3
Query:  639 PGLYYVDSEGGRLKGTRFSVGSGSPYAYGVLDSGYKFDMSI 761
            P L+ VD  GG  +    + GSG  +AY +LDS Y+ +MS+
Sbjct:  118 PRLFSVDMVGGITEDNYAAAGSGMEFAYSILDSEYREEMSV 158          
BLAST of CK935606 vs. ExPASy Swiss-Prot
Match: PSMB_PYRHO (Proteasome subunit beta OS=Pyrococcus horikoshii GN=psmB PE=3 SV=1)

HSP 1 Score: 63.5438 bits (153), Expect = 1.644e-14
Identity = 37/108 (34.26%), Postives = 62/108 (57.41%), Query Frame = 1
Query:  223 KGTTTLAFIFKEGVMVAADSRASMGGYISSQSVKKIIEINPYMLGTMAGGAADCQFWHRNLGIKCRLHELANKRRISVTGASKLLANILYSYRGMGLSVGTMIAGWDE 546
            KGTTT+  + K+GV++AAD RAS+G  I +++V KI +I+ ++    AG   D     R L  + +L+   + +R+SV   + LLANI+   +        ++ G+DE
Sbjct:    9 KGTTTVGIVCKDGVVLAADRRASLGNIIYARNVTKIHKIDEHLAIAGAGDVGDILNLVRLLRAEAKLYYSQSGKRMSVKALATLLANIMNGAKYFPYLAWFLVGGYDE 116          

HSP 2 Score: 36.965 bits (84), Expect = 1.644e-14
Identity = 21/59 (35.59%), Postives = 29/59 (49.15%), Query Frame = 3
Query:  639 PGLYYVDSEGGRLKGTRFSVGSGSPYAYGVLDSGYKFDMSIXXXXXXXXXXIYHATFRD 815
            P LY VD  GG  +    + GSG  +AY +LDS YK ++++          I  A  RD
Sbjct:  118 PKLYSVDMVGGITEDKYATAGSGMEFAYSILDSEYKDNLTLEEGIKLAVKAINTAIKRD 176          
BLAST of CK935606 vs. ExPASy Swiss-Prot
Match: PB6LB_SALSA (Proteasome subunit beta type-6-B like protein OS=Salmo salar GN=psmb6l-b PE=3 SV=1)

HSP 1 Score: 63.1586 bits (152), Expect = 6.077e-14
Identity = 36/107 (33.64%), Postives = 60/107 (56.07%), Query Frame = 1
Query:  226 GTTTLAFIFKEGVMVAADSRASMGG-YISSQSVKKIIEINPYMLGTMAGGAADCQFWHRNLGIKCRLHELANKRRISVTGASKLLANILYSYRGMGLSVGTMIAGWD 543
            GTT LA  F  GV++ +DSRAS+GG Y+SS+++ K+I+++  +   +AG  AD Q   +    +   H +  +    V  A+ +L  + Y+ +   L  G + AGWD
Sbjct:   16 GTTILAVTFNGGVIIGSDSRASIGGSYVSSKTINKLIQVHDRIFCCIAGSLADAQAVTKAAKFQISFHSIQMESPPLVKAAASVLKELCYNNK-EELQAGFITAGWD 121          

HSP 2 Score: 35.4242 bits (80), Expect = 6.077e-14
Identity = 21/43 (48.84%), Postives = 27/43 (62.79%), Query Frame = 3
Query:  633 QGPGLYYVDSEGGRLKGTRFSVG-SGSPYAYGVLDSGYKFDMS 758
            +GP +Y V + GG L    F++G SGS Y YG  D+ YK DMS
Sbjct:  124 KGPQVYTV-ALGGMLLSQPFTIGGSGSTYIYGYADAKYKPDMS 165          
BLAST of CK935606 vs. ExPASy Swiss-Prot
Match: PB6LA_SALSA (Proteasome subunit beta type-6-A like protein OS=Salmo salar GN=psmb6l-a PE=3 SV=1)

HSP 1 Score: 63.1586 bits (152), Expect = 6.077e-14
Identity = 36/107 (33.64%), Postives = 60/107 (56.07%), Query Frame = 1
Query:  226 GTTTLAFIFKEGVMVAADSRASMGG-YISSQSVKKIIEINPYMLGTMAGGAADCQFWHRNLGIKCRLHELANKRRISVTGASKLLANILYSYRGMGLSVGTMIAGWD 543
            GTT LA  F  GV++ +DSRAS+GG Y+SS+++ K+I+++  +   +AG  AD Q   +    +   H +  +    V  A+ +L  + Y+ +   L  G + AGWD
Sbjct:   16 GTTILAVTFNGGVIIGSDSRASIGGSYVSSKTINKLIQVHDRIFCCIAGSLADAQAVTKAAKFQISFHSIQMESPPLVKAAASVLKELCYNNK-EELQAGFITAGWD 121          

HSP 2 Score: 35.4242 bits (80), Expect = 6.077e-14
Identity = 21/43 (48.84%), Postives = 27/43 (62.79%), Query Frame = 3
Query:  633 QGPGLYYVDSEGGRLKGTRFSVG-SGSPYAYGVLDSGYKFDMS 758
            +GP +Y V + GG L    F++G SGS Y YG  D+ YK DMS
Sbjct:  124 KGPQVYTV-ALGGMLLSQPFTIGGSGSTYIYGYADAKYKPDMS 165          
BLAST of CK935606 vs. ExPASy Swiss-Prot
Match: PSMB_SULSO (Proteasome subunit beta OS=Sulfolobus solfataricus GN=psmB PE=3 SV=2)

HSP 1 Score: 63.5438 bits (153), Expect = 6.416e-13
Identity = 39/116 (33.62%), Postives = 63/116 (54.31%), Query Frame = 1
Query:  214 KHAKGTTTLAFIFKEGVMVAADSRASMGGYISSQSVKKIIEINPYMLGTMAGGAADCQFWHRNLGIKCRLHELANKRRISVTGASKLLANILYSYRGMGLSVGTMIAGWDETVREF 561
            K  KGTTT+     +GV++AAD RAS G +++++ V+K++ I   +  T AG  AD QF +  L      + +     IS+ G +  LAN+L + +     V  +I G+D+  R F
Sbjct:   10 KILKGTTTVGIRVNDGVILAADRRASAGFFVANKMVRKVLYITDKIGITTAGSVADLQFIYDVLKNIYHYNSITKYGPISIKGIATRLANVLSATKYFPYIVQILIGGYDDQPRLF 125          

HSP 2 Score: 31.5722 bits (70), Expect = 6.416e-13
Identity = 18/60 (30.00%), Postives = 28/60 (46.67%), Query Frame = 3
Query:  639 PGLYYVDSEGGRLKGTRFSVGSGSPYAYGVLDSGYKFDMSIXXXXXXXXXXIYHATFRDA 818
            P L+ +D  G   +    + GSGSP A GVL+  Y   M++          ++ A  RD+
Sbjct:  122 PRLFNLDYLGDITEENYVATGSGSPVAMGVLEDEYNPKMTLDEAADLAKRAVFSAIKRDS 181          
The following BLAST results are available for this feature:
BLAST of CK935606 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 31
Match NameE-valueIdentityDescription
PSB11_HUMAN4.792e-2143.10Proteasome subunit beta type-11 OS=Homo sapiens GN... [more]
PSMB_METTH2.066e-1938.89Proteasome subunit beta OS=Methanobacterium thermo... [more]
PSMB_ARCFU9.994e-1939.25Proteasome subunit beta OS=Archaeoglobus fulgidus ... [more]
PSMB_METJA1.379e-1734.58Proteasome subunit beta OS=Methanocaldococcus jann... [more]
PSMB_PYRAB4.436e-1533.33Proteasome subunit beta OS=Pyrococcus abyssi GN=ps... [more]
PSMB_PYRFU7.492e-1535.40Proteasome subunit beta OS=Pyrococcus furiosus GN=... [more]
PSMB_PYRHO1.644e-1434.26Proteasome subunit beta OS=Pyrococcus horikoshii G... [more]
PB6LB_SALSA6.077e-1433.64Proteasome subunit beta type-6-B like protein OS=S... [more]
PB6LA_SALSA6.077e-1433.64Proteasome subunit beta type-6-A like protein OS=S... [more]
PSMB_SULSO6.416e-1333.62Proteasome subunit beta OS=Sulfolobus solfataricus... [more]

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Properties
Property NameValue
Genbank descriptionCGF1004553_F08 Developing fruit 24 DAFB Citrus sinensis cDNA clone T24DAB0004_IIF_F08 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK935606 ID=CK935606; Name=CK935606; organism=Citrus sinensis; type=EST; length=919bp
GGGGGATTTCTGCTTGCAACTCTCAGTTACATTGTCGTTTAATCTTATAT
TCAGTGCGTAGACATGAAGCTCGACACTAGCGGTCTTGAGTCCACTTCTC
CTTTTTTCGGGTCAGGCGACGAGCTCTGTCCTGAGTTATCAGCTGCACCA
TCATTTTCTCTACCTCTTTCTACTGATTTTGATGAATTTCAAAAGGACAC
TAAAGCTACACTGAAGCATGCCAAGGGGACAACCACACTTGCTTTTATCT
TTAAAGAGGGTGTTATGGTGGCTGCTGATTCTCGAGCTAGCATGGGAGGC
TATATCTCATCACAGTCTGTGAAGAAAATTATAGAAATCAATCCTTACAT
GCTTGGCACAATGGCTGGAGGAGCAGCCGATTGCCAGTTTTGGCACAGAA
ATCTGGGCATTAAGTGCCGACTACATGAATTGGCCAACAAGCGTAGAATT
TCAGTTACAGGGGCATCAAAGCTGCTGGCCAACATTCTCTACTCTTATCG
TGGAATGGGGTTGTCTGTTGGGACTATGATTGCTGGATGGGATGAGACTG
TAAGGGAATTCATGTTTCAGGTTTTTTGTTTTGCTTTTGCATCTCTGATT
GCGTCTCTTTTGAGCTGTTTGTCCGTGGGTTGCAGGGTCCTGGGCTGTAT
TATGTGGACAGTGAAGGAGGGAGGCTCAAAGGAACACGGTTCTCTGTGGG
ATCAGGTTCGCCATATGCTTATGGTGTATTGGACAGCGGGTACAAGTTTG
ACATGTCTATTGAAGAAGCTGCGGAGTTGGCTAGAAGAGCTATTTATCAT
GCGACATTCAGAGATGCAGCCAGNTGGTGGTGTTGCAAGCGTTTATTATG
TGGGACNNNNNGGATGGAAGAAGCTGTCTGGTGATGATGTTGGAGAGCTT
CACTACCATTATTATCCAG
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