CK935606
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CK935606 vs. ExPASy Swiss-Prot
Match: PSB11_HUMAN (Proteasome subunit beta type-11 OS=Homo sapiens GN=PSMB11 PE=2 SV=1) HSP 1 Score: 102.064 bits (253), Expect = 4.792e-21 Identity = 50/116 (43.10%), Postives = 75/116 (64.66%), Query Frame = 1 Query: 220 AKGTTTLAFIFKEGVMVAADSRASMGGYISSQSVKKIIEINPYMLGTMAGGAADCQFWHRNLGIKCRLHELANKRRISVTGASKLLANILYSYRGMGLSVGTMIAGWDETVREFMF 567 A GTTTLAF F+ GV+ AAD+R+S G Y++ + K+I ++ ++LGT +G +ADC W+R L + RL EL + SV A+KLL+ ++ YRG+ L V T + GWD + E + Sbjct: 47 AHGTTTLAFRFRHGVIAAADTRSSCGSYVACPASCKVIPVHQHLLGTTSGTSADCATWYRVLQRELRLRELREGQLPSVASAAKLLSAMMSQYRGLDLCVATALCGWDRSGPELFY 162 HSP 2 Score: 75.485 bits (184), Expect = 4.824e-13 Identity = 39/73 (53.42%), Postives = 46/73 (63.01%), Query Frame = 3 Query: 600 CVSFELFVRGLQGPGLYYVDSEGGRLKGTRFSVGSGSPYAYGVLDSGYKFDMSIXXXXXXXXXXIYHATFRDA 818 CV+ L GP L+YV S+G RL+G FSVGSGSPYAYGVLD GY++DMS + HAT RDA Sbjct: 145 CVATALCGWDRSGPELFYVYSDGTRLQGDIFSVGSGSPYAYGVLDRGYRYDMSTQEAYALARCAVAHATHRDA 217
BLAST of CK935606 vs. ExPASy Swiss-Prot
Match: PSMB_METTH (Proteasome subunit beta OS=Methanobacterium thermoautotrophicum GN=psmB PE=3 SV=1) HSP 1 Score: 78.5666 bits (192), Expect = 2.066e-19 Identity = 42/108 (38.89%), Postives = 64/108 (59.26%), Query Frame = 1 Query: 223 KGTTTLAFIFKEGVMVAADSRASMGGYISSQSVKKIIEINPYMLGTMAGGAADCQFWHRNLGIKCRLHELANKRRISVTGASKLLANILYSYRGMGLSVGTMIAGWDE 546 KGTTT+ K+GV+ A + RASMG I+ ++ KI +I+ ++ T+AG AD Q + L + L+ + N +IS+ A+ L ANIL+S R V T++ G DE Sbjct: 8 KGTTTVGITCKDGVVFATERRASMGNLIAHKATDKIFKIDEHIAATIAGSVADAQSLMKYLKAEAALYRMRNSEKISIEAAAALAANILHSSRFYPFIVQTLLGGVDE 115 HSP 2 Score: 38.5058 bits (88), Expect = 2.066e-19 Identity = 21/60 (35.00%), Postives = 28/60 (46.67%), Query Frame = 3 Query: 636 GPGLYYVDSEGGRLKGTRFSVGSGSPYAYGVLDSGYKFDMSIXXXXXXXXXXIYHATFRD 815 G +Y +D GG + S GSGSP AYGVL+ Y ++ + I A RD Sbjct: 117 GAKIYSLDPSGGMIPDKFVSTGSGSPVAYGVLEDRYSDELYVDEAVDVAIRAIKSAMERD 176
BLAST of CK935606 vs. ExPASy Swiss-Prot
Match: PSMB_ARCFU (Proteasome subunit beta OS=Archaeoglobus fulgidus GN=psmB PE=1 SV=1) HSP 1 Score: 79.7221 bits (195), Expect = 9.994e-19 Identity = 42/107 (39.25%), Postives = 65/107 (60.75%), Query Frame = 1 Query: 223 KGTTTLAFIFKEGVMVAADSRASMGGYISSQSVKKIIEINPYMLGTMAGGAADCQFWHRNLGIKCRLHELANKRRISVTGASKLLANILYSYRGMGLSVGTMIAGWD 543 KGTTT+ + K+GV++A + RA+MG +I+S++ KKI +I M T AG D QF R + I+ L+E+ +R+ +V + L +N+L SYR V +I G D Sbjct: 10 KGTTTVGLVCKDGVVMATEKRATMGNFIASKAAKKIYQIADRMAMTTAGSVGDAQFLARIIKIEANLYEIRRERKPTVRAIATLTSNLLNSYRYFPYLVQLLIGGID 116 HSP 2 Score: 35.039 bits (79), Expect = 9.994e-19 Identity = 22/73 (30.14%), Postives = 37/73 (50.68%), Query Frame = 3 Query: 612 ELFVRGL--QGPGLYYVDSEGGRLKGTRF-SVGSGSPYAYGVLDSGYKFDMSIXXXXXXXXXXIYHATFRDAA 821 +L + G+ +G +Y +D GG ++ + GSGS AYGVL+ + ++ + IY A RD+A Sbjct: 109 QLLIGGIDSEGKSIYSIDPIGGAIEEKDIVATGSGSLTAYGVLEDRFTPEIGVDEAVELAVRAIYSAMKRDSA 181
BLAST of CK935606 vs. ExPASy Swiss-Prot
Match: PSMB_METJA (Proteasome subunit beta OS=Methanocaldococcus jannaschii GN=psmB PE=1 SV=1) HSP 1 Score: 68.5514 bits (166), Expect = 1.379e-17 Identity = 37/107 (34.58%), Postives = 60/107 (56.07%), Query Frame = 1 Query: 223 KGTTTLAFIFKEGVMVAADSRASMGGYISSQSVKKIIEINPYMLGTMAGGAADCQFWHRNLGIKCRLHELANKRRISVTGASKLLANILYSYRGMGLSVGTMIAGWD 543 KGTTT+ I + V++A D RAS+G ++ + KK+ +I+ Y+ T+AG D Q R L + +L+++ R I + LL+NIL+S R +I G+D Sbjct: 5 KGTTTVGLICDDAVILATDKRASLGNLVADKEAKKLYKIDDYIAMTIAGSVGDAQAIVRLLIAEAKLYKMRTGRNIPPLACATLLSNILHSSRMFPFLTQIIIGGYD 111 HSP 2 Score: 42.3578 bits (98), Expect = 1.379e-17 Identity = 22/45 (48.89%), Postives = 30/45 (66.67%), Query Frame = 3 Query: 630 LQGPGLYYVDSEGGRLKGTRFSV-GSGSPYAYGVLDSGYKFDMSI 761 L+G L+ +D GG + F+ GSGSP AYGVL++GY DMS+ Sbjct: 113 LEGAKLFSLDPLGGMNEEKTFTATGSGSPIAYGVLEAGYDRDMSV 157
BLAST of CK935606 vs. ExPASy Swiss-Prot
Match: PSMB_PYRAB (Proteasome subunit beta OS=Pyrococcus abyssi GN=psmB PE=3 SV=1) HSP 1 Score: 63.5438 bits (153), Expect = 4.436e-15 Identity = 37/111 (33.33%), Postives = 63/111 (56.76%), Query Frame = 1 Query: 223 KGTTTLAFIFKEGVMVAADSRASMGGYISSQSVKKIIEINPYMLGTMAGGAADCQFWHRNLGIKCRLHELANKRRISVTGASKLLANILYSYRGMGLSVGTMIAGWDETVR 555 KGTTT+ + +GV++AAD RAS+G + +++V KI +I+ ++ AG D R L + +L+ + +R+SV + LLAN+L R + ++ G+DE R Sbjct: 9 KGTTTVGIVCSDGVVLAADRRASLGNIVYAKNVTKIHKIDEHLAIAGAGDVGDILNLVRLLRAEAKLYYAQSGKRMSVKALATLLANMLNGARMLPYLAWFLVGGFDEKPR 119 HSP 2 Score: 38.891 bits (89), Expect = 4.436e-15 Identity = 22/59 (37.29%), Postives = 28/59 (47.46%), Query Frame = 3 Query: 639 PGLYYVDSEGGRLKGTRFSVGSGSPYAYGVLDSGYKFDMSIXXXXXXXXXXIYHATFRD 815 P LY VD GG + + GSG +AY VLDS Y+ D+ + I A RD Sbjct: 118 PRLYSVDMMGGITEDKYVAAGSGMEFAYSVLDSEYREDLKVREGIKIAVEAINSAIKRD 176
BLAST of CK935606 vs. ExPASy Swiss-Prot
Match: PSMB_PYRFU (Proteasome subunit beta OS=Pyrococcus furiosus GN=psmB PE=3 SV=1) HSP 1 Score: 64.3142 bits (155), Expect = 7.492e-15 Identity = 40/113 (35.40%), Postives = 63/113 (55.75%), Query Frame = 1 Query: 223 KGTTTLAFIFKEGVMVAADSRASMGGYISSQSVKKIIEINPYMLGTMAGGAADCQFWHRNLGIKCRLHELANKRRISVTGASKLLANILYSYRGMGLSVGTMIAGWDETVREF 561 KGTTT+ + KEGV++AAD+RAS+G I +++V KI +I+ ++ AG D R L + L++ + +SV + LLANIL + ++ G+DE R F Sbjct: 9 KGTTTVGLVCKEGVVLAADTRASLGNIIYAKNVTKIHKIDEHLAIAGAGDVGDILNLVRLLKAEANLYKSTVGKEMSVKALATLLANILNGSKYFPYLGWFLVGGYDEKPRLF 121 HSP 2 Score: 37.3502 bits (85), Expect = 7.492e-15 Identity = 17/41 (41.46%), Postives = 25/41 (60.98%), Query Frame = 3 Query: 639 PGLYYVDSEGGRLKGTRFSVGSGSPYAYGVLDSGYKFDMSI 761 P L+ VD GG + + GSG +AY +LDS Y+ +MS+ Sbjct: 118 PRLFSVDMVGGITEDNYAAAGSGMEFAYSILDSEYREEMSV 158
BLAST of CK935606 vs. ExPASy Swiss-Prot
Match: PSMB_PYRHO (Proteasome subunit beta OS=Pyrococcus horikoshii GN=psmB PE=3 SV=1) HSP 1 Score: 63.5438 bits (153), Expect = 1.644e-14 Identity = 37/108 (34.26%), Postives = 62/108 (57.41%), Query Frame = 1 Query: 223 KGTTTLAFIFKEGVMVAADSRASMGGYISSQSVKKIIEINPYMLGTMAGGAADCQFWHRNLGIKCRLHELANKRRISVTGASKLLANILYSYRGMGLSVGTMIAGWDE 546 KGTTT+ + K+GV++AAD RAS+G I +++V KI +I+ ++ AG D R L + +L+ + +R+SV + LLANI+ + ++ G+DE Sbjct: 9 KGTTTVGIVCKDGVVLAADRRASLGNIIYARNVTKIHKIDEHLAIAGAGDVGDILNLVRLLRAEAKLYYSQSGKRMSVKALATLLANIMNGAKYFPYLAWFLVGGYDE 116 HSP 2 Score: 36.965 bits (84), Expect = 1.644e-14 Identity = 21/59 (35.59%), Postives = 29/59 (49.15%), Query Frame = 3 Query: 639 PGLYYVDSEGGRLKGTRFSVGSGSPYAYGVLDSGYKFDMSIXXXXXXXXXXIYHATFRD 815 P LY VD GG + + GSG +AY +LDS YK ++++ I A RD Sbjct: 118 PKLYSVDMVGGITEDKYATAGSGMEFAYSILDSEYKDNLTLEEGIKLAVKAINTAIKRD 176
BLAST of CK935606 vs. ExPASy Swiss-Prot
Match: PB6LB_SALSA (Proteasome subunit beta type-6-B like protein OS=Salmo salar GN=psmb6l-b PE=3 SV=1) HSP 1 Score: 63.1586 bits (152), Expect = 6.077e-14 Identity = 36/107 (33.64%), Postives = 60/107 (56.07%), Query Frame = 1 Query: 226 GTTTLAFIFKEGVMVAADSRASMGG-YISSQSVKKIIEINPYMLGTMAGGAADCQFWHRNLGIKCRLHELANKRRISVTGASKLLANILYSYRGMGLSVGTMIAGWD 543 GTT LA F GV++ +DSRAS+GG Y+SS+++ K+I+++ + +AG AD Q + + H + + V A+ +L + Y+ + L G + AGWD Sbjct: 16 GTTILAVTFNGGVIIGSDSRASIGGSYVSSKTINKLIQVHDRIFCCIAGSLADAQAVTKAAKFQISFHSIQMESPPLVKAAASVLKELCYNNK-EELQAGFITAGWD 121 HSP 2 Score: 35.4242 bits (80), Expect = 6.077e-14 Identity = 21/43 (48.84%), Postives = 27/43 (62.79%), Query Frame = 3 Query: 633 QGPGLYYVDSEGGRLKGTRFSVG-SGSPYAYGVLDSGYKFDMS 758 +GP +Y V + GG L F++G SGS Y YG D+ YK DMS Sbjct: 124 KGPQVYTV-ALGGMLLSQPFTIGGSGSTYIYGYADAKYKPDMS 165
BLAST of CK935606 vs. ExPASy Swiss-Prot
Match: PB6LA_SALSA (Proteasome subunit beta type-6-A like protein OS=Salmo salar GN=psmb6l-a PE=3 SV=1) HSP 1 Score: 63.1586 bits (152), Expect = 6.077e-14 Identity = 36/107 (33.64%), Postives = 60/107 (56.07%), Query Frame = 1 Query: 226 GTTTLAFIFKEGVMVAADSRASMGG-YISSQSVKKIIEINPYMLGTMAGGAADCQFWHRNLGIKCRLHELANKRRISVTGASKLLANILYSYRGMGLSVGTMIAGWD 543 GTT LA F GV++ +DSRAS+GG Y+SS+++ K+I+++ + +AG AD Q + + H + + V A+ +L + Y+ + L G + AGWD Sbjct: 16 GTTILAVTFNGGVIIGSDSRASIGGSYVSSKTINKLIQVHDRIFCCIAGSLADAQAVTKAAKFQISFHSIQMESPPLVKAAASVLKELCYNNK-EELQAGFITAGWD 121 HSP 2 Score: 35.4242 bits (80), Expect = 6.077e-14 Identity = 21/43 (48.84%), Postives = 27/43 (62.79%), Query Frame = 3 Query: 633 QGPGLYYVDSEGGRLKGTRFSVG-SGSPYAYGVLDSGYKFDMS 758 +GP +Y V + GG L F++G SGS Y YG D+ YK DMS Sbjct: 124 KGPQVYTV-ALGGMLLSQPFTIGGSGSTYIYGYADAKYKPDMS 165
BLAST of CK935606 vs. ExPASy Swiss-Prot
Match: PSMB_SULSO (Proteasome subunit beta OS=Sulfolobus solfataricus GN=psmB PE=3 SV=2) HSP 1 Score: 63.5438 bits (153), Expect = 6.416e-13 Identity = 39/116 (33.62%), Postives = 63/116 (54.31%), Query Frame = 1 Query: 214 KHAKGTTTLAFIFKEGVMVAADSRASMGGYISSQSVKKIIEINPYMLGTMAGGAADCQFWHRNLGIKCRLHELANKRRISVTGASKLLANILYSYRGMGLSVGTMIAGWDETVREF 561 K KGTTT+ +GV++AAD RAS G +++++ V+K++ I + T AG AD QF + L + + IS+ G + LAN+L + + V +I G+D+ R F Sbjct: 10 KILKGTTTVGIRVNDGVILAADRRASAGFFVANKMVRKVLYITDKIGITTAGSVADLQFIYDVLKNIYHYNSITKYGPISIKGIATRLANVLSATKYFPYIVQILIGGYDDQPRLF 125 HSP 2 Score: 31.5722 bits (70), Expect = 6.416e-13 Identity = 18/60 (30.00%), Postives = 28/60 (46.67%), Query Frame = 3 Query: 639 PGLYYVDSEGGRLKGTRFSVGSGSPYAYGVLDSGYKFDMSIXXXXXXXXXXIYHATFRDA 818 P L+ +D G + + GSGSP A GVL+ Y M++ ++ A RD+ Sbjct: 122 PRLFNLDYLGDITEENYVATGSGSPVAMGVLEDEYNPKMTLDEAADLAKRAVFSAIKRDS 181 The following BLAST results are available for this feature:
BLAST of CK935606 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 31
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Sequences
The
following sequences are available for this feature:
EST sequence >CK935606 ID=CK935606; Name=CK935606; organism=Citrus sinensis; type=EST; length=919bpback to top |