CK935606

Overview
NameCK935606
Unique NameCK935606
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length919
Libraries
Library NameType
Developing fruit 24 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
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BLAST of CK935606 vs. ExPASy Swiss-Prot
Match: PSB9_BOVIN (Proteasome subunit beta type-9 OS=Bos taurus GN=PSMB9 PE=1 SV=1)

HSP 1 Score: 58.9214 bits (141), Expect = 3.223e-11
Identity = 35/107 (32.71%), Postives = 56/107 (52.34%), Query Frame = 1 
Query:  226 GTTTLAFIFKEGVMVAADSRASMGGYISSQSVKKIIEINPYMLGTMAGGAADCQFWHRNLGIKCRLHELANKRRISVTGASKLLANILYSYRGMGLSVGTMIAGWDE 546
            GTT +A  F  GV+V +DSR S G  + ++   K+  ++ ++   ++G AAD Q        +  LH +  +    V  A+ ++ NI Y YR   LS   M+AGWD+
Sbjct:   20 GTTIMAVEFDGGVVVGSDSRVSAGEAVVNRVFDKLSPLHQHIYCALSGSAADAQAIADMAAYQLELHGMELEEPPLVLAAANVVRNITYKYR-EDLSAHLMVAGWDQ 125

HSP 2 Score: 30.4166 bits (67), Expect = 3.223e-11
Identity = 17/41 (41.46%), Postives = 22/41 (53.66%), Query Frame = 3 
Query:  663 EGGRLKGTRFSV---------GSGSPYAYGVLDSGYKFDMS 758
            EGG++ GT   +         GSGS Y YG +D+ YK  MS
Sbjct:  127 EGGQVYGTMSGMLIRQPFAIGGSGSTYIYGYVDAAYKPGMS 167
The following BLAST results are available for this feature:
BLAST of CK935606 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 31
Match NameE-valueIdentityDescription
PSB9_BOVIN3.223e-1132.71Proteasome subunit beta type-9 OS=Bos taurus GN=PS... [more]

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Properties
Property NameValue
Genbank descriptionCGF1004553_F08 Developing fruit 24 DAFB Citrus sinensis cDNA clone T24DAB0004_IIF_F08 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK935606 ID=CK935606; Name=CK935606; organism=Citrus sinensis; type=EST; length=919bp
GGGGGATTTCTGCTTGCAACTCTCAGTTACATTGTCGTTTAATCTTATAT
TCAGTGCGTAGACATGAAGCTCGACACTAGCGGTCTTGAGTCCACTTCTC
CTTTTTTCGGGTCAGGCGACGAGCTCTGTCCTGAGTTATCAGCTGCACCA
TCATTTTCTCTACCTCTTTCTACTGATTTTGATGAATTTCAAAAGGACAC
TAAAGCTACACTGAAGCATGCCAAGGGGACAACCACACTTGCTTTTATCT
TTAAAGAGGGTGTTATGGTGGCTGCTGATTCTCGAGCTAGCATGGGAGGC
TATATCTCATCACAGTCTGTGAAGAAAATTATAGAAATCAATCCTTACAT
GCTTGGCACAATGGCTGGAGGAGCAGCCGATTGCCAGTTTTGGCACAGAA
ATCTGGGCATTAAGTGCCGACTACATGAATTGGCCAACAAGCGTAGAATT
TCAGTTACAGGGGCATCAAAGCTGCTGGCCAACATTCTCTACTCTTATCG
TGGAATGGGGTTGTCTGTTGGGACTATGATTGCTGGATGGGATGAGACTG
TAAGGGAATTCATGTTTCAGGTTTTTTGTTTTGCTTTTGCATCTCTGATT
GCGTCTCTTTTGAGCTGTTTGTCCGTGGGTTGCAGGGTCCTGGGCTGTAT
TATGTGGACAGTGAAGGAGGGAGGCTCAAAGGAACACGGTTCTCTGTGGG
ATCAGGTTCGCCATATGCTTATGGTGTATTGGACAGCGGGTACAAGTTTG
ACATGTCTATTGAAGAAGCTGCGGAGTTGGCTAGAAGAGCTATTTATCAT
GCGACATTCAGAGATGCAGCCAGNTGGTGGTGTTGCAAGCGTTTATTATG
TGGGACNNNNNGGATGGAAGAAGCTGTCTGGTGATGATGTTGGAGAGCTT
CACTACCATTATTATCCAG
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