CK935660

Overview
NameCK935660
Unique NameCK935660
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length869
Libraries
Library NameType
Developing fruit 24 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CK935660 vs. ExPASy Swiss-Prot
Match: SODCP_PINSY (Superoxide dismutase [Cu-Zn], chloroplastic (Fragment) OS=Pinus sylvestris GN=SODCP PE=2 SV=1)

HSP 1 Score: 253.062 bits (645), Expect = 1.545e-66
Identity = 117/140 (83.57%), Postives = 130/140 (92.86%), Query Frame = 1
Query:  376 VEGVVTLTQEDGGPTTVNVRVTGLTPGPHGLHLHEYGDTTNGCMSTGAHFNPNNMTHGAPKDEVRHAGDLGNIVANANGVAEATIVDNQISLDGPNTVVGRAFVVHELEDDLGKGGHELSLTTGNAGGRLACGVVGLTPV 795
            VEGVVTL+QED GPTTV VR+TGLTPG HG HLHE+GDTTNGCMSTG+HFNP  +THGAP+D+VRHAGDLGNIVA ++GVAEATIVDNQI L GP++V+GRA VVHELEDDLGKGGHELSLTTGNAGGRLACGVVGLTP+
Sbjct:    2 VEGVVTLSQEDNGPTTVKVRLTGLTPGKHGFHLHEFGDTTNGCMSTGSHFNPKKLTHGAPEDDVRHAGDLGNIVAGSDGVAEATIVDNQIPLSGPDSVIGRALVVHELEDDLGKGGHELSLTTGNAGGRLACGVVGLTPI 141          
BLAST of CK935660 vs. ExPASy Swiss-Prot
Match: SODC1_BRAJU (Superoxide dismutase [Cu-Zn] 1 OS=Brassica juncea GN=SODCC1 PE=2 SV=3)

HSP 1 Score: 198.749 bits (504), Expect = 3.458e-50
Identity = 93/143 (65.03%), Postives = 106/143 (74.13%), Query Frame = 1
Query:  358 LKGTSNVEGVVTLTQEDGGPTTVNVRVTGLTPGPHGLHLHEYGDTTNGCMSTGAHFNPNNMTHGAPKDEVRHAGDLGNIVANANGVAEATIVDNQISLDGPNTVVGRAFVVHELEDDLGKGGHELSLTTGNAGGRLACGVVGL 786
            L  +  V+G +  TQE  G TTV   V+GL PG HG H+H  GDTTNGCMSTG HFNP   THGAP+D  RHAGDLGNI    +G A  TI D+QI LDGPN++VGRA VVH   DDLGKGGHELSLTTGNAGGR+ACG++GL
Sbjct:    8 LNSSEGVKGTIFFTQEGNGTTTVTGTVSGLKPGLHGFHVHALGDTTNGCMSTGPHFNPEGKTHGAPEDANRHAGDLGNITVGDDGTATFTITDSQIPLDGPNSIVGRAVVVHAEPDDLGKGGHELSLTTGNAGGRVACGIIGL 150          
BLAST of CK935660 vs. ExPASy Swiss-Prot
Match: SODC_SPIOL (Superoxide dismutase [Cu-Zn] OS=Spinacia oleracea GN=SODCC PE=2 SV=1)

HSP 1 Score: 197.978 bits (502), Expect = 5.899e-50
Identity = 91/143 (63.64%), Postives = 106/143 (74.13%), Query Frame = 1
Query:  358 LKGTSNVEGVVTLTQEDGGPTTVNVRVTGLTPGPHGLHLHEYGDTTNGCMSTGAHFNPNNMTHGAPKDEVRHAGDLGNIVANANGVAEATIVDNQISLDGPNTVVGRAFVVHELEDDLGKGGHELSLTTGNAGGRLACGVVGL 786
            L  +  V G V   QE  GPTTV   V+GL PG HG H+H  GDTTNGCMSTG H+NPN   HGAP+D+VRHAGDLGNI    +G A  TI+D+QI L GPN++VGRA VVH   DDLG+GGHELS TTGNAGGR+ACG++GL
Sbjct:    8 LSSSEGVSGTVYFAQEGDGPTTVTGNVSGLKPGLHGFHVHALGDTTNGCMSTGPHYNPNGKEHGAPEDDVRHAGDLGNITVGDDGTATFTIIDSQIPLSGPNSIVGRAVVVHAEPDDLGRGGHELSKTTGNAGGRVACGIIGL 150          
BLAST of CK935660 vs. ExPASy Swiss-Prot
Match: SODC_PINSY (Superoxide dismutase [Cu-Zn] OS=Pinus sylvestris GN=SODCC PE=2 SV=1)

HSP 1 Score: 197.978 bits (502), Expect = 5.899e-50
Identity = 92/143 (64.34%), Postives = 109/143 (76.22%), Query Frame = 1
Query:  358 LKGTSNVEGVVTLTQEDGGPTTVNVRVTGLTPGPHGLHLHEYGDTTNGCMSTGAHFNPNNMTHGAPKDEVRHAGDLGNIVANANGVAEATIVDNQISLDGPNTVVGRAFVVHELEDDLGKGGHELSLTTGNAGGRLACGVVGL 786
            L G ++V+GVV  TQE  GPTTV  +++GL+PG HG H+H  GDTTNGCMSTG HFNP    HGAP D+ RHAGDLGN+    +G  E +I D+QI L GP+++VGRA VVH   DDLGKGGHELS +TGNAGGRLACGVVGL
Sbjct:   10 LNGAADVKGVVQFTQEGDGPTTVTGKISGLSPGLHGFHVHALGDTTNGCMSTGPHFNPLGKEHGAPTDDNRHAGDLGNVTVGTDGTVEFSITDSQIPLSGPHSIVGRAVVVHADPDDLGKGGHELSKSTGNAGGRLACGVVGL 152          
BLAST of CK935660 vs. ExPASy Swiss-Prot
Match: SODC_PANGI (Superoxide dismutase [Cu-Zn] OS=Panax ginseng GN=SODCC PE=2 SV=1)

HSP 1 Score: 196.438 bits (498), Expect = 1.716e-49
Identity = 90/143 (62.94%), Postives = 107/143 (74.83%), Query Frame = 1
Query:  358 LKGTSNVEGVVTLTQEDGGPTTVNVRVTGLTPGPHGLHLHEYGDTTNGCMSTGAHFNPNNMTHGAPKDEVRHAGDLGNIVANANGVAEATIVDNQISLDGPNTVVGRAFVVHELEDDLGKGGHELSLTTGNAGGRLACGVVGL 786
            L G+  V GV+  TQE+ GPTTV  +++GL PG HG H+H  GDTTNGC+STG H+NP N  HGAP+DE RHAGDLGN+    +G AE TIVD QI L G  +++GRA VVH   DDLGKGGHELS +TGNAGGRLACG +GL
Sbjct:    8 LSGSGGVSGVIHFTQEEDGPTTVTGKLSGLAPGLHGFHVHALGDTTNGCLSTGPHYNPANKEHGAPEDETRHAGDLGNVTVGEDGTAEFTIVDKQIPLIGSGSIIGRAVVVHADPDDLGKGGHELSKSTGNAGGRLACGFIGL 150          
BLAST of CK935660 vs. ExPASy Swiss-Prot
Match: SODC1_MESCR (Superoxide dismutase [Cu-Zn] 1 OS=Mesembryanthemum crystallinum GN=SODCC.1 PE=2 SV=1)

HSP 1 Score: 196.052 bits (497), Expect = 2.241e-49
Identity = 92/143 (64.34%), Postives = 104/143 (72.73%), Query Frame = 1
Query:  358 LKGTSNVEGVVTLTQEDGGPTTVNVRVTGLTPGPHGLHLHEYGDTTNGCMSTGAHFNPNNMTHGAPKDEVRHAGDLGNIVANANGVAEATIVDNQISLDGPNTVVGRAFVVHELEDDLGKGGHELSLTTGNAGGRLACGVVGL 786
            L  +  V G V  TQE  GPTTV   V+GL PG HG H+H  GDTTNGCMSTG HFNP    HGAP+DE RHAGDLGNI    +G A  TI+D+QI L GPN++VGRA VVH   DDLG+GGHELS  TGNAGGR+ACGV+GL
Sbjct:    8 LSSSEGVSGTVQFTQEGSGPTTVTGNVSGLRPGLHGFHVHALGDTTNGCMSTGPHFNPAGKEHGAPEDETRHAGDLGNITVGDDGTATFTIIDSQIPLTGPNSIVGRAVVVHADPDDLGRGGHELSKATGNAGGRVACGVIGL 150          
BLAST of CK935660 vs. ExPASy Swiss-Prot
Match: SODC4_MAIZE (Superoxide dismutase [Cu-Zn] 4A OS=Zea mays GN=SODCC.3 PE=2 SV=2)

HSP 1 Score: 195.282 bits (495), Expect = 3.823e-49
Identity = 89/143 (62.24%), Postives = 108/143 (75.52%), Query Frame = 1
Query:  358 LKGTSNVEGVVTLTQEDGGPTTVNVRVTGLTPGPHGLHLHEYGDTTNGCMSTGAHFNPNNMTHGAPKDEVRHAGDLGNIVANANGVAEATIVDNQISLDGPNTVVGRAFVVHELEDDLGKGGHELSLTTGNAGGRLACGVVGL 786
            L  +  V+G +  TQE  GPTTV   V+GL PG HG H+H  GDTTNGCMSTG H+NP +  HGAP+DE RHAGDLGN+ A A+GVA   + D+QI L GPN+++GRA VVH   DDLGKGGHELS +TGNAGGR+ACG++GL
Sbjct:    8 LGSSEGVKGTIFFTQEGDGPTTVTGSVSGLKPGLHGFHVHALGDTTNGCMSTGPHYNPASKEHGAPEDENRHAGDLGNVTAGADGVANINVTDSQIPLTGPNSIIGRAVVVHADPDDLGKGGHELSKSTGNAGGRVACGIIGL 150          
BLAST of CK935660 vs. ExPASy Swiss-Prot
Match: SODC_PAUKA (Superoxide dismutase [Cu-Zn] OS=Paulownia kawakamii GN=SODCC PE=2 SV=1)

HSP 1 Score: 194.897 bits (494), Expect = 4.994e-49
Identity = 90/143 (62.94%), Postives = 103/143 (72.03%), Query Frame = 1
Query:  358 LKGTSNVEGVVTLTQEDGGPTTVNVRVTGLTPGPHGLHLHEYGDTTNGCMSTGAHFNPNNMTHGAPKDEVRHAGDLGNIVANANGVAEATIVDNQISLDGPNTVVGRAFVVHELEDDLGKGGHELSLTTGNAGGRLACGVVGL 786
            L  +  V G +  TQE  GPTTV   V+GL PGPHG H+H  GDTTNGC+STG HFNP    HGAP DEVRHAGDLGN+    +G A  TIVD QI L GP++++GRA VVH   DDLGKGGHELS TTGN GGR+ACG+ GL
Sbjct:    8 LSSSEGVSGTIYFTQEGDGPTTVTGNVSGLKPGPHGFHVHALGDTTNGCLSTGPHFNPAGKEHGAPDDEVRHAGDLGNVTVGEDGTAAFTIVDKQIPLTGPHSIIGRAVVVHADPDDLGKGGHELSKTTGNTGGRVACGINGL 150          
BLAST of CK935660 vs. ExPASy Swiss-Prot
Match: SODC_SOYBN (Superoxide dismutase [Cu-Zn] OS=Glycine max GN=SOD1 PE=3 SV=1)

HSP 1 Score: 194.126 bits (492), Expect = 8.518e-49
Identity = 89/143 (62.24%), Postives = 105/143 (73.43%), Query Frame = 1
Query:  358 LKGTSNVEGVVTLTQEDGGPTTVNVRVTGLTPGPHGLHLHEYGDTTNGCMSTGAHFNPNNMTHGAPKDEVRHAGDLGNIVANANGVAEATIVDNQISLDGPNTVVGRAFVVHELEDDLGKGGHELSLTTGNAGGRLACGVVGL 786
            L  +  V G +  TQE  GPTTV   + GL PG HG H+H  GDTTNGC+STGAHFNPNN  HGAP+DE RHAGDLGN+    +G    +I D+QI L GPN+++GRA VVH   DDLGKGGHELS TTGNAGGR+ACG++GL
Sbjct:    8 LGSSEGVTGTIFFTQEGNGPTTVTGSLAGLKPGLHGFHVHALGDTTNGCLSTGAHFNPNNNEHGAPEDENRHAGDLGNVNVGDDGTVSFSITDSQIPLTGPNSIIGRAVVVHADSDDLGKGGHELSKTTGNAGGRVACGIIGL 150          
BLAST of CK935660 vs. ExPASy Swiss-Prot
Match: SODC1_ORYSJ (Superoxide dismutase [Cu-Zn] 1 OS=Oryza sativa subsp. japonica GN=SODCC1 PE=1 SV=1)

HSP 1 Score: 193.741 bits (491), Expect = 1.112e-48
Identity = 88/137 (64.23%), Postives = 104/137 (75.91%), Query Frame = 1
Query:  376 VEGVVTLTQEDGGPTTVNVRVTGLTPGPHGLHLHEYGDTTNGCMSTGAHFNPNNMTHGAPKDEVRHAGDLGNIVANANGVAEATIVDNQISLDGPNTVVGRAFVVHELEDDLGKGGHELSLTTGNAGGRLACGVVGL 786
            V+G +   QE  GPTTV   V+GL PG HG H+H  GDTTNGCMSTG H+NP    HGAP+DE RHAGDLGN+ A  +GVA   +VD+QI L GPN+++GRA VVH   DDLGKGGHELS TTGNAGGR+ACG++GL
Sbjct:   14 VKGTIHFVQEGDGPTTVTGSVSGLKPGLHGFHIHALGDTTNGCMSTGPHYNPAGKEHGAPEDETRHAGDLGNVTAGEDGVANIHVVDSQIPLTGPNSIIGRAVVVHADPDDLGKGGHELSKTTGNAGGRVACGIIGL 150          
The following BLAST results are available for this feature:
BLAST of CK935660 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 144
Match NameE-valueIdentityDescription
SODCP_PINSY1.545e-6683.57Superoxide dismutase [Cu-Zn], chloroplastic (Fragm... [more]
SODC1_BRAJU3.458e-5065.03Superoxide dismutase [Cu-Zn] 1 OS=Brassica juncea ... [more]
SODC_SPIOL5.899e-5063.64Superoxide dismutase [Cu-Zn] OS=Spinacia oleracea ... [more]
SODC_PINSY5.899e-5064.34Superoxide dismutase [Cu-Zn] OS=Pinus sylvestris G... [more]
SODC_PANGI1.716e-4962.94Superoxide dismutase [Cu-Zn] OS=Panax ginseng GN=S... [more]
SODC1_MESCR2.241e-4964.34Superoxide dismutase [Cu-Zn] 1 OS=Mesembryanthemum... [more]
SODC4_MAIZE3.823e-4962.24Superoxide dismutase [Cu-Zn] 4A OS=Zea mays GN=SOD... [more]
SODC_PAUKA4.994e-4962.94Superoxide dismutase [Cu-Zn] OS=Paulownia kawakami... [more]
SODC_SOYBN8.518e-4962.24Superoxide dismutase [Cu-Zn] OS=Glycine max GN=SOD... [more]
SODC1_ORYSJ1.112e-4864.23Superoxide dismutase [Cu-Zn] 1 OS=Oryza sativa sub... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionCGF1004553_A09 Developing fruit 24 DAFB Citrus sinensis cDNA clone T24DAB0004_IIF_A09 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK935660 ID=CK935660; Name=CK935660; organism=Citrus sinensis; type=EST; length=869bp
GCGGGGAGCAATCACCAGAAACACAAAATCGNNNTATCAATTAACATCAT
CCGTCCGTCCGTCCATCCGTCCATCCACTCACCCTCACGCTCAATGCAAG
CCGCAATAGCAGCCATGGCTCACGTTCTCCTCGTAGCAGCACCGCCCTCT
TCATCTCACACACTCCTTGCCACATTGCCAAATCCTAGCAGTATCACGCG
CTCTTCCTCTTCTTCTTCTTCTCATTCTCCCTCGCTTCACTCTGCATTCC
ACGGCGTCTCCCTCAAATTCCCCTCTCGTCTCAACTTATCTCTCGCCGCC
GTGGCCTCCAAGAAGCCGTTGACTGTCGTTGCTGCCGCCAAGAAAGCGGT
GGCTGTTCTTAAAGGCACTTCCAATGTTGAAGGAGTTGTTACGTTGACCC
AAGAAGATGGCGGTCCTACGACTGTCAATGTTCGTGTTACTGGTCTTACT
CCTGGGCCTCACGGGTTACACCTACACGAATATGGTGATACGACAAATGG
GTGTATGTCAACAGGAGCACATTTCAATCCTAATAACATGACACACGGTG
CTCCTAAAGATGAAGTGCGACACGCGGGTGACCTGGGAAACATAGTTGCT
AACGCCAATGGTGTGGCAGAAGCAACAATTGTGGACAACCAGATATCACT
GGATGGTCCAAACACAGTAGTTGGAAGAGCCTTTGTGGTTCATGAGCTTG
AGGATGACCTTGGAAAAGGTGGGCATGAACTTAGTCTAACCACTGGCAAT
GCAGGTGGAAGACTGGCATGCGGTGTCGTTGGCTTGACTCCGGTATGAGA
TCAGCAAAACCAGTGTGGTTGCACTATATGCTGCATGCTTTTTCCAGATT
ATCAATCGGAGCCAAGTAC
back to top