CK935660

Overview
NameCK935660
Unique NameCK935660
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length869
Libraries
Library NameType
Developing fruit 24 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CK935660 vs. ExPASy Swiss-Prot
Match: SODC_BOTFU (Superoxide dismutase [Cu-Zn] OS=Botryotinia fuckeliana GN=sod1 PE=3 SV=3)

HSP 1 Score: 154.451 bits (389), Expect = 7.479e-37
Identity = 75/145 (51.72%), Postives = 95/145 (65.52%), Query Frame = 1
Query:  358 LKGTSNVEGVVTLTQ-EDGGPTTVNVRVTGLTPGPH-GLHLHEYGDTTNGCMSTGAHFNPNNMTHGAPKDEVRHAGDLGNIVANANGVAEATIVDNQISLDGPNTVVGRAFVVHELEDDLGKGGHELSLTTGNAGGRLACGVVGL 786
            ++G S + G VT  Q E+  PTT+   +TG       G+H+H++GD TNGC S G HFNP+  THGAP DEVRH GDLGN   +A G A  ++ D+ I L GP +V+GR  VVH   DDLGKG +E S  TGNAG R ACGV+G+
Sbjct:    8 VRGDSKISGTVTFEQSEENSPTTITWNITGNDANAERGMHVHQFGDNTNGCTSAGPHFNPHGQTHGAPTDEVRHVGDLGNFKTDAQGNATGSVQDSHIKLIGPLSVIGRTVVVHSGTDDLGKGENEESKKTGNAGTRPACGVIGI 152          
BLAST of CK935660 vs. ExPASy Swiss-Prot
Match: SODC_COLGL (Superoxide dismutase [Cu-Zn] OS=Colletotrichum gloeosporioides GN=SOD1 PE=3 SV=3)

HSP 1 Score: 153.295 bits (386), Expect = 1.666e-36
Identity = 73/146 (50.00%), Postives = 97/146 (66.44%), Query Frame = 1
Query:  358 LKGTSNVEGVVTLTQE-DGGPTTVNVRVTGLTPGP-HGLHLHEYGDTTNGCMSTGAHFNPNNMTHGAPKDEVRHAGDLGNIVANANGVAEATIVDNQISLDGPNTVVGRAFVVHELEDDLGKGGHELSLTTGNAGGRLACGVVGLT 789
            ++G S V G +   QE +  PT +   ++G       G+H+H +GD TNGC S G HFNP+N THGAP+D  RH GDLGNI  +ANG ++ T+ D+ + L GP +V+GR  VVH   DDLGKG +E SL TGNAG R ACGV+G++
Sbjct:    8 VRGDSKVTGSIVFEQESESAPTKITWDISGNDANAKRGMHIHTFGDNTNGCTSAGPHFNPHNKTHGAPEDSNRHVGDLGNIETDANGNSKGTVTDSHVKLIGPESVIGRTIVVHGGTDDLGKGDNEESLKTGNAGPRPACGVIGIS 153          
BLAST of CK935660 vs. ExPASy Swiss-Prot
Match: SODC_KLULA (Superoxide dismutase [Cu-Zn] OS=Kluyveromyces lactis GN=SOD1 PE=3 SV=1)

HSP 1 Score: 152.91 bits (385), Expect = 2.176e-36
Identity = 75/146 (51.37%), Postives = 96/146 (65.75%), Query Frame = 1
Query:  358 LKGTSNVEGVVTLTQE-DGGPTTVNVRVTGLTPGP-HGLHLHEYGDTTNGCMSTGAHFNPNNMTHGAPKDEVRHAGDLGNIVANANGVAEATIVDNQISLDGPNTVVGRAFVVHELEDDLGKGGHELSLTTGNAGGRLACGVVGLT 789
            LKG S+V G+V   QE +   T ++  +TG       G H+H +GD TNGC S G HFNP N  HGAP+DE RH GDLGNI  +A G+++ ++ D  I L GP ++VGR  VVH  +DDLGKGG   SL TGNAG R ACGV+G++
Sbjct:    8 LKGDSSVSGIVRFEQESEDQQTKISWEITGNDANALRGFHIHTFGDNTNGCTSAGPHFNPFNKNHGAPEDEERHVGDLGNIPTDAQGISKGSLTDKHIKLLGPLSIVGRTVVVHAGQDDLGKGGDAESLKTGNAGARHACGVIGIS 153          
BLAST of CK935660 vs. ExPASy Swiss-Prot
Match: SODC_PODAN (Superoxide dismutase [Cu-Zn] OS=Podospora anserina GN=SOD1 PE=3 SV=3)

HSP 1 Score: 152.14 bits (383), Expect = 3.712e-36
Identity = 76/146 (52.05%), Postives = 94/146 (64.38%), Query Frame = 1
Query:  358 LKGTSNVEGVVTLTQE-DGGPTTVNVRVTGLTPGP-HGLHLHEYGDTTNGCMSTGAHFNPNNMTHGAPKDEVRHAGDLGNIVANANGVAEATIVDNQISLDGPNTVVGRAFVVHELEDDLGKGGHELSLTTGNAGGRLACGVVGLT 789
            ++G S V G V   QE + GPTT+   +TG       G+H+H +GD TNGC S G HFNP+  THG   DE RH GDLGNI  +A G ++ T+ DN I L GP +V+GR  VVH   DDLGKG  E SL TGNAG R ACGV+G++
Sbjct:    8 VRGDSKVSGSVVFEQETENGPTTITWDITGHDANAKRGMHIHTFGDNTNGCTSAGPHFNPHGKTHGNRTDENRHVGDLGNIETDAQGNSKGTVTDNLIKLIGPESVIGRTVVVHAGTDDLGKGDTEESLKTGNAGARPACGVIGIS 153          
BLAST of CK935660 vs. ExPASy Swiss-Prot
Match: SODC_HUMLT (Superoxide dismutase [Cu-Zn] OS=Humicola lutea PE=1 SV=2)

HSP 1 Score: 152.14 bits (383), Expect = 3.712e-36
Identity = 74/145 (51.03%), Postives = 95/145 (65.52%), Query Frame = 1
Query:  358 LKGTSNVEGVVTLTQ-EDGGPTTVNVRVTGLTPGPH-GLHLHEYGDTTNGCMSTGAHFNPNNMTHGAPKDEVRHAGDLGNIVANANGVAEATIVDNQISLDGPNTVVGRAFVVHELEDDLGKGGHELSLTTGNAGGRLACGVVGL 786
            L+G S + G VT  Q  +  PTTV+  +TG  P    G+H+H++GD TNGC S G H+NP   THGAP DEVRH GDLGNI  +A G A  ++ D  I + G  +++GR  VVH   DDLG+GG+E S  TGNAG R ACGV+G+
Sbjct:    8 LRGDSKITGTVTFEQANESAPTTVSWNITGHDPNAERGMHIHQFGDNTNGCTSAGPHYNPFKKTHGAPTDEVRHVGDLGNIKTDAEGNAVGSVQDKLIKVIGAESILGRTIVVHAGTDDLGRGGNEESKKTGNAGPRPACGVIGI 152          
BLAST of CK935660 vs. ExPASy Swiss-Prot
Match: SODC_CLAPU (Superoxide dismutase [Cu-Zn] OS=Claviceps purpurea GN=SOD1 PE=3 SV=3)

HSP 1 Score: 150.984 bits (380), Expect = 8.269e-36
Identity = 72/146 (49.32%), Postives = 94/146 (64.38%), Query Frame = 1
Query:  358 LKGTSNVEGVVTLTQE-DGGPTTVNVRVTGLTPGP-HGLHLHEYGDTTNGCMSTGAHFNPNNMTHGAPKDEVRHAGDLGNIVANANGVAEATIVDNQISLDGPNTVVGRAFVVHELEDDLGKGGHELSLTTGNAGGRLACGVVGLT 789
            L+G + V G V   QE +  PTT+   +TG       G H+H +GD TNGC S G HFNP+  THGAP DE RH GDLGN+  +  G A+ ++ D  + L GP++V+GR  V+H   DDLGKG +E SL TGNAG R ACGV+G++
Sbjct:    8 LRGDAKVGGTVVFEQESESAPTTITWDITGNDANAKRGFHIHTFGDNTNGCTSAGPHFNPHGKTHGAPTDEARHVGDLGNLETDGQGNAKGSVKDEHVKLIGPHSVIGRTVVIHAGTDDLGKGDNEESLKTGNAGPRPACGVIGIS 153          
BLAST of CK935660 vs. ExPASy Swiss-Prot
Match: SODC_CANAL (Superoxide dismutase [Cu-Zn] OS=Candida albicans GN=SOD1 PE=3 SV=3)

HSP 1 Score: 150.599 bits (379), Expect = 1.080e-35
Identity = 75/146 (51.37%), Postives = 95/146 (65.07%), Query Frame = 1
Query:  358 LKGTSNVEGVVTLTQE-DGGPTTVNVRVTGLTPGP-HGLHLHEYGDTTNGCMSTGAHFNPNNMTHGAPKDEVRHAGDLGNIVANANGVAEATIVDNQISLDGPNTVVGRAFVVHELEDDLGKGGHELSLTTGNAGGRLACGVVGLT 789
            ++G S V+G V   QE +  PTT++  + G  P    G H+H++GD TNGC S G HFNP    HGAP+D+ RH GDLGNI  + NGVA+ T  D  I L G ++++GR  VVH   DD GKGG E S TTG+AG R ACGV+GLT
Sbjct:    8 VRGDSKVQGTVHFEQESESAPTTISWEIEGNDPNALRGFHIHQFGDNTNGCTSAGPHFNPFGKQHGAPEDDERHVGDLGNISTDGNGVAKGTKQDLLIKLIGKDSILGRTIVVHAGTDDYGKGGFEDSKTTGHAGARPACGVIGLT 153          
BLAST of CK935660 vs. ExPASy Swiss-Prot
Match: SODE_HAECO (Extracellular superoxide dismutase [Cu-Zn] OS=Haemonchus contortus GN=SOD PE=2 SV=1)

HSP 1 Score: 149.828 bits (377), Expect = 1.842e-35
Identity = 73/135 (54.07%), Postives = 90/135 (66.67%), Query Frame = 1
Query:  382 GVVTLTQEDGGPTTVNVRVTGLTPGPHGLHLHEYGDTTNGCMSTGAHFNPNNMTHGAPKDEVRHAGDLGNIVANANGVAEATIVDNQISLDGPNTVVGRAFVVHELEDDLGKGGHELSLTTGNAGGRLACGVVGL 786
            G++ L Q  G    +N  V+GL PG HG H+HE GD  NGC++ GAHFNP+ M HGAP+D  RH GDLGNI     G     I D+ ISL G + V+GRA V+H   DDLG+G  ELS TTGNAG R+ACGV+G+
Sbjct:   49 GIIDLVQT-GTLVKMNGSVSGLQPGLHGFHIHEKGDLGNGCLAAGAHFNPHKMMHGAPEDSNRHVGDLGNIETPKTGDTPILISDSVISLTGQHNVIGRAIVIHADMDDLGRGTSELSKTTGNAGARVACGVIGI 182          
BLAST of CK935660 vs. ExPASy Swiss-Prot
Match: SODC4_DICDI (Superoxide dismutase [Cu-Zn] 4 OS=Dictyostelium discoideum GN=sodD PE=2 SV=1)

HSP 1 Score: 149.828 bits (377), Expect = 1.842e-35
Identity = 73/137 (53.28%), Postives = 97/137 (70.80%), Query Frame = 1
Query:  376 VEGVVTLTQE-DGGPTTVNVRVTGLTPGPHGLHLHEYGDTTNGCMSTGAHFNPNNMTHGAPKDEVRHAGDLGNIVA-NANGVAEATIVDNQISLDGPNTVVGRAFVVHELEDDLGKGGHELSLTTGNAGGRLACGVV 780
            V G +  +QE +G P  VN  ++GL+ G HG H+HE+GDT+NGC+S GAHFNP ++ HG P   +RH GDLGNI +  ++ VA   I DN ISL G  +++GR  VVHE +DDLG GG+ LS TTGNAG R+ACG++
Sbjct:   13 VNGTIIFSQENEGSPVYVNGTISGLSGGLHGFHIHEFGDTSNGCLSAGAHFNPFHVEHGGPNSAIRHVGDLGNITSCPSSKVANVLIQDNVISLFGDLSIIGRTLVVHENQDDLGLGGN-LSKTTGNAGARVACGIL 148          
BLAST of CK935660 vs. ExPASy Swiss-Prot
Match: SODC6_DICDI (Probable superoxide dismutase [Cu-Zn] 6 OS=Dictyostelium discoideum GN=sodF PE=3 SV=1)

HSP 1 Score: 148.288 bits (373), Expect = 5.360e-35
Identity = 71/136 (52.21%), Postives = 95/136 (69.85%), Query Frame = 1
Query:  376 VEGVVTLTQE-DGGPTTVNVRVTGLTPGPHGLHLHEYGDTTNGCMSTGAHFNPNNMTHGAPKDEVRHAGDLGNIVANANGVAEATIVDNQISLDGPNTVVGRAFVVHELEDDLGKGGHELSLTTGNAGGRLACGVV 780
            VEG VTL+QE +G P  +N  V+GLTPG HG+H+HE+GDT+NGC+S G H+NP +  HG+P D  RH GDLGNI A +NGVA  +I D  +SL G  +V+GR  V+H   DD G+G    S T G++G R+ CG++
Sbjct:   13 VEGKVTLSQECEGSPIYINGTVSGLTPGQHGMHVHEFGDTSNGCISAGDHYNPLHREHGSPLDVERHIGDLGNIKALSNGVATISIRDTIMSLFGDISVMGRTMVIHSDRDDYGRGNFPDSKTAGHSGKRVGCGII 148          
The following BLAST results are available for this feature:
BLAST of CK935660 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 144
Match NameE-valueIdentityDescription
SODC_BOTFU7.479e-3751.72Superoxide dismutase [Cu-Zn] OS=Botryotinia fuckel... [more]
SODC_COLGL1.666e-3650.00Superoxide dismutase [Cu-Zn] OS=Colletotrichum glo... [more]
SODC_KLULA2.176e-3651.37Superoxide dismutase [Cu-Zn] OS=Kluyveromyces lact... [more]
SODC_PODAN3.712e-3652.05Superoxide dismutase [Cu-Zn] OS=Podospora anserina... [more]
SODC_HUMLT3.712e-3651.03Superoxide dismutase [Cu-Zn] OS=Humicola lutea PE=... [more]
SODC_CLAPU8.269e-3649.32Superoxide dismutase [Cu-Zn] OS=Claviceps purpurea... [more]
SODC_CANAL1.080e-3551.37Superoxide dismutase [Cu-Zn] OS=Candida albicans G... [more]
SODE_HAECO1.842e-3554.07Extracellular superoxide dismutase [Cu-Zn] OS=Haem... [more]
SODC4_DICDI1.842e-3553.28Superoxide dismutase [Cu-Zn] 4 OS=Dictyostelium di... [more]
SODC6_DICDI5.360e-3552.21Probable superoxide dismutase [Cu-Zn] 6 OS=Dictyos... [more]

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Properties
Property NameValue
Genbank descriptionCGF1004553_A09 Developing fruit 24 DAFB Citrus sinensis cDNA clone T24DAB0004_IIF_A09 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK935660 ID=CK935660; Name=CK935660; organism=Citrus sinensis; type=EST; length=869bp
GCGGGGAGCAATCACCAGAAACACAAAATCGNNNTATCAATTAACATCAT
CCGTCCGTCCGTCCATCCGTCCATCCACTCACCCTCACGCTCAATGCAAG
CCGCAATAGCAGCCATGGCTCACGTTCTCCTCGTAGCAGCACCGCCCTCT
TCATCTCACACACTCCTTGCCACATTGCCAAATCCTAGCAGTATCACGCG
CTCTTCCTCTTCTTCTTCTTCTCATTCTCCCTCGCTTCACTCTGCATTCC
ACGGCGTCTCCCTCAAATTCCCCTCTCGTCTCAACTTATCTCTCGCCGCC
GTGGCCTCCAAGAAGCCGTTGACTGTCGTTGCTGCCGCCAAGAAAGCGGT
GGCTGTTCTTAAAGGCACTTCCAATGTTGAAGGAGTTGTTACGTTGACCC
AAGAAGATGGCGGTCCTACGACTGTCAATGTTCGTGTTACTGGTCTTACT
CCTGGGCCTCACGGGTTACACCTACACGAATATGGTGATACGACAAATGG
GTGTATGTCAACAGGAGCACATTTCAATCCTAATAACATGACACACGGTG
CTCCTAAAGATGAAGTGCGACACGCGGGTGACCTGGGAAACATAGTTGCT
AACGCCAATGGTGTGGCAGAAGCAACAATTGTGGACAACCAGATATCACT
GGATGGTCCAAACACAGTAGTTGGAAGAGCCTTTGTGGTTCATGAGCTTG
AGGATGACCTTGGAAAAGGTGGGCATGAACTTAGTCTAACCACTGGCAAT
GCAGGTGGAAGACTGGCATGCGGTGTCGTTGGCTTGACTCCGGTATGAGA
TCAGCAAAACCAGTGTGGTTGCACTATATGCTGCATGCTTTTTCCAGATT
ATCAATCGGAGCCAAGTAC
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