CK935660

Overview
NameCK935660
Unique NameCK935660
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length869
Libraries
Library NameType
Developing fruit 24 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CK935660 vs. ExPASy Swiss-Prot
Match: SODC_EMENI (Superoxide dismutase [Cu-Zn] OS=Emericella nidulans GN=sodA PE=1 SV=3)

HSP 1 Score: 147.517 bits (371), Expect = 9.143e-35
Identity = 75/145 (51.72%), Postives = 91/145 (62.76%), Query Frame = 1
Query:  358 LKGTSNVEGVVTLTQED-GGPTTVNVRVTGLTPGPH-GLHLHEYGDTTNGCMSTGAHFNPNNMTHGAPKDEVRHAGDLGNIVANANGVAEATIVDNQISLDGPNTVVGRAFVVHELEDDLGKGGHELSLTTGNAGGRLACGVVGL 786
            L+G S V G VT  Q D    TTV+  +TG  P    G H+H++GD TNGC S G HFNP   THGAP+DEVRH GDLGN   +A G ++ +  D  I L G  +V+GR  VVH   DDLG+G  E S  TGNAG R ACGV+G+
Sbjct:    8 LRGDSKVSGTVTFEQADENSNTTVSWNITGNDPNAERGFHIHQFGDNTNGCTSAGPHFNPFGKTHGAPEDEVRHVGDLGNFKTDAEGNSKGSKTDKLIKLIGAESVLGRTLVVHAGTDDLGRGDSEESKKTGNAGARPACGVIGI 152          
BLAST of CK935660 vs. ExPASy Swiss-Prot
Match: SODC_NPVAC (Putative superoxide dismutase [Cu-Zn] OS=Autographa californica nuclear polyhedrosis virus GN=SOD PE=3 SV=1)

HSP 1 Score: 147.132 bits (370), Expect = 1.194e-34
Identity = 70/142 (49.30%), Postives = 92/142 (64.79%), Query Frame = 1
Query:  367 TSNVEGVVTLTQEDGG-PTTVNVRVTGLTPGPHGLHLHEYGDTTNGCMSTGAHFNPNNMTHGAPKDEVRHAGDLGNI-VANANGVAEATIVDNQISLDGPNTVVGRAFVVHELEDDLGKGGHELSLTTGNAGGRLACGVVGL 786
            + +V G +   QE    P  ++  +  L  G HG H+HEYGDT+NGC S G HFNP N  HGAP  E+RH GDLGNI  A  N + E  ++DN +SL GP+ ++GR+ VVH  +DDLG   H LS TTGN+GGRL CG++ +
Sbjct:    8 SGDVHGKIYFQQESANQPLKISGYLLNLPRGLHGFHVHEYGDTSNGCTSAGEHFNPTNEDHGAPDAEIRHVGDLGNIKSAGYNSLTEVNMMDNVMSLYGPHNIIGRSLVVHTDKDDLGLTDHPLSKTTGNSGGRLGCGIIAI 149          
BLAST of CK935660 vs. ExPASy Swiss-Prot
Match: SODE_DIRIM (Extracellular superoxide dismutase [Cu-Zn] OS=Dirofilaria immitis PE=2 SV=1)

HSP 1 Score: 146.747 bits (369), Expect = 1.559e-34
Identity = 69/146 (47.26%), Postives = 90/146 (61.64%), Query Frame = 1
Query:  367 TSNVEGVVTLTQED-GGPTTVNVRVTGLTPGPHGLHLHEYGDTTNGCMSTGAHFNPNNMTHGAPKDEVRHAGDLGNIVANANGVAEATIVDNQISLDGPNTVVGRAFVVHELEDDLGKG---GHELSLTTGNAGGRLACGVVGLTP 792
            +  V G++   Q +    TT+   + GLTPG HG H+H+YG   NGC S  AH+NP   THG P + ++H GDL NI A A+GVA   I+ N I L GP +V+GR+ VVH   DDLGKG     E SL TGNAG R+ C ++G+ P
Sbjct:   48 SDTVNGIIYFQQNNRASATTIYGTINGLTPGLHGFHIHQYGIKANGCTSAAAHYNPFEKTHGRPTNNIKHIGDLRNIKAGADGVANVNIISNHIQLSGPLSVIGRSLVVHANPDDLGKGNGDAREESLKTGNAGSRIVCSIIGIAP 193          
BLAST of CK935660 vs. ExPASy Swiss-Prot
Match: SODC_ASPFU (Superoxide dismutase [Cu-Zn] OS=Aspergillus fumigatus GN=sodC PE=2 SV=3)

HSP 1 Score: 146.362 bits (368), Expect = 2.037e-34
Identity = 74/145 (51.03%), Postives = 90/145 (62.07%), Query Frame = 1
Query:  358 LKGTSNVEGVVTLTQED-GGPTTVNVRVTGLTPGP-HGLHLHEYGDTTNGCMSTGAHFNPNNMTHGAPKDEVRHAGDLGNIVANANGVAEATIVDNQISLDGPNTVVGRAFVVHELEDDLGKGGHELSLTTGNAGGRLACGVVGL 786
            L+G S + G VT  Q D   PTTV+  + G  P    G H+H++GD TNGC S G HFNP   THGAP+D  RH GDLGN   +A G A  +  D  I L G  +V+GR  VVH   DDLG+GG+E S  TGNAG R ACGV+G+
Sbjct:    8 LRGDSKITGTVTFEQADENSPTTVSWNIKGNDPNAKRGFHVHQFGDNTNGCTSAGPHFNPYGKTHGAPEDSERHVGDLGNFETDAEGNAVGSKQDKLIKLIGAESVLGRTLVVHAGTDDLGRGGNEESKKTGNAGARPACGVIGI 152          
BLAST of CK935660 vs. ExPASy Swiss-Prot
Match: SODC_ASPJA (Superoxide dismutase [Cu-Zn] (Fragment) OS=Aspergillus japonicus GN=sodC PE=3 SV=1)

HSP 1 Score: 144.05 bits (362), Expect = 1.011e-33
Identity = 68/112 (60.71%), Postives = 81/112 (72.32%), Query Frame = 1
Query:  460 HGLHLHEYGDTTNGCMSTGAHFNPNNMTHGAPKDEVRHAGDLGNIVANANGVAEATIVDNQISLDGPNTVVGRAFVVHELEDDLGKGGHELSLTTGNAGGRL---ACGVVGL 786
            HG H+H  GDTTNGCMSTG HFNP    HGAP+DE RHAGDLGNI A A+GVA   + D+QI L G ++++GRA VVH   DDLGKGGHELS TTGN+   +   A G+ G+
Sbjct:    8 HGFHVHALGDTTNGCMSTGPHFNPTGKEHGAPQDENRHAGDLGNITAGADGVANVNVSDSQIPLTGAHSIIGRAVVVHADPDDLGKGGHELSKTTGNSNSSMDSCAHGIQGI 119          
BLAST of CK935660 vs. ExPASy Swiss-Prot
Match: SODC_ASPNG (Superoxide dismutase [Cu-Zn] OS=Aspergillus niger GN=sodC PE=1 SV=2)

HSP 1 Score: 142.895 bits (359), Expect = 2.252e-33
Identity = 71/145 (48.97%), Postives = 91/145 (62.76%), Query Frame = 1
Query:  358 LKGTSNVEGVVTLTQ-EDGGPTTVNVRVTGLTPGPH-GLHLHEYGDTTNGCMSTGAHFNPNNMTHGAPKDEVRHAGDLGNIVANANGVAEATIVDNQISLDGPNTVVGRAFVVHELEDDLGKGGHELSLTTGNAGGRLACGVVGL 786
            ++G S V G VT  Q  +  PTT++  +TG       G H+H++GD TNGC S G HFNP   THGAP+D+ RH GDLGN   +A G A  +  D  + L G  +V+GR  VVH   DDLG+GG+E S  TGNAG R ACGV+G+
Sbjct:    8 IRGDSKVSGTVTFEQANENTPTTISWNITGHDANAERGFHVHQFGDNTNGCTSAGPHFNPYGKTHGAPEDDERHVGDLGNFKTDAEGNAVGSKQDKLVKLIGAESVLGRTLVVHAGTDDLGRGGNEESKKTGNAGPRPACGVIGI 152          
BLAST of CK935660 vs. ExPASy Swiss-Prot
Match: SODC_ASPNC (Superoxide dismutase [Cu-Zn] OS=Aspergillus niger (strain CBS 513.88 / FGSC A1513) GN=sodC PE=3 SV=1)

HSP 1 Score: 142.51 bits (358), Expect = 2.941e-33
Identity = 71/145 (48.97%), Postives = 91/145 (62.76%), Query Frame = 1
Query:  358 LKGTSNVEGVVTLTQ-EDGGPTTVNVRVTGLTPGPH-GLHLHEYGDTTNGCMSTGAHFNPNNMTHGAPKDEVRHAGDLGNIVANANGVAEATIVDNQISLDGPNTVVGRAFVVHELEDDLGKGGHELSLTTGNAGGRLACGVVGL 786
            ++G S V G VT  Q  +  PTT++  +TG       G H+H++GD TNGC S G HFNP   THGAP+D+ RH GDLGN   +A G A  +  D  + L G  +V+GR  VVH   DDLG+GG+E S  TGNAG R ACGV+G+
Sbjct:    8 IRGDSKVSGTVTFEQANENTPTTISWNITGHDANAERGFHVHQFGDNTNGCTSAGPHFNPFGKTHGAPEDDERHVGDLGNFKTDAEGNAVGSKQDKLVKLIGAESVLGRTLVVHAGTDDLGRGGNEESKKTGNAGPRPACGVIGI 152          
BLAST of CK935660 vs. ExPASy Swiss-Prot
Match: SODC1_DEBHA (Superoxide dismutase [Cu-Zn] 1 OS=Debaryomyces hansenii GN=SOD1 PE=1 SV=4)

HSP 1 Score: 142.51 bits (358), Expect = 2.941e-33
Identity = 70/146 (47.95%), Postives = 92/146 (63.01%), Query Frame = 1
Query:  358 LKGTSNVEGVVTLTQE-DGGPTTVNVRVTGLTPGP-HGLHLHEYGDTTNGCMSTGAHFNPNNMTHGAPKDEVRHAGDLGNIVANANGVAEATIVDNQISLDGPNTVVGRAFVVHELEDDLGKGGHELSLTTGNAGGRLACGVVGLT 789
            L+G S V GVV   Q  +  PTT+   ++G       G H+H +GD TNGC S G HFNP    HGAP+D+ RH GDLGN+  + +GVA+ +  D  + L G N+++GR  V+H   DDLGKGG+  S  TGNAG R ACGV+GL+
Sbjct:    8 LRGDSKVSGVVNFEQSSESDPTTITWEISGNDANALRGFHVHTFGDNTNGCTSAGPHFNPFTKEHGAPEDDNRHVGDLGNVTTDTSGVAKGSKQDLFVKLIGQNSILGRTVVIHAGTDDLGKGGNAESKKTGNAGARPACGVIGLS 153          
BLAST of CK935660 vs. ExPASy Swiss-Prot
Match: SODE_CAEEL (Extracellular superoxide dismutase [Cu-Zn] OS=Caenorhabditis elegans GN=sod-4 PE=1 SV=2)

HSP 1 Score: 142.124 bits (357), Expect = 3.841e-33
Identity = 64/127 (50.39%), Postives = 86/127 (67.72%), Query Frame = 1
Query:  403 EDGGPTTVNVRVTGLTPGPHGLHLHEYGDTTNGCMSTGAHFNPNNMTHGAPKDEVRHAGDLGNIVANANGVAEATIVDNQISLDGPNTVVGRAFVVHELEDDLGKGGHELSLTTGNAGGRLACGVVG 783
            + G    +N  V+GL  G HG H+HE GDT NGC+S G H+NP+ ++HGAP D  RH GDLGNI + A+G    ++ D+  SL G  +++GR+ V+HE  DDLG+G  + S TTGNAG RLACG +G
Sbjct:   48 QSGSFLKLNGSVSGLAAGKHGFHIHEKGDTGNGCLSAGGHYNPHKLSHGAPDDSNRHIGDLGNIESPASGDTLISVSDSLASLSGQYSIIGRSVVIHEKTDDLGRGTSDQSKTTGNAGSRLACGTIG 174          
BLAST of CK935660 vs. ExPASy Swiss-Prot
Match: SODC_PAESI (Superoxide dismutase [Cu-Zn] OS=Paecilomyces sinensis GN=SOD1 PE=3 SV=3)

HSP 1 Score: 141.739 bits (356), Expect = 5.017e-33
Identity = 69/145 (47.59%), Postives = 93/145 (64.14%), Query Frame = 1
Query:  358 LKGTSNVEGVVTLTQE-DGGPTTVNVRVTGL-TPGPHGLHLHEYGDTTNGCMSTGAHFNPNNMTHGAPKDEVRHAGDLGNIVANANGVAEATIVDNQISLDGPNTVVGRAFVVHELEDDLGKGGHELSLTTGNAGGRLACGVVGL 786
            L+G S + G+V   QE D  PTT++  ++        G H+  +GD TNGC S G HFNP+  THG   DE RH GD+GNI  + +G ++ +I D  I L GP++V+GR  V+H   DDLGKGG++ SL TGNAG R ACGV+G+
Sbjct:    8 LRGDSKITGIVNFEQESDSSPTTISWEISNHDADAKRGFHITPFGDNTNGCTSAGPHFNPHGKTHGNVTDENRHVGDMGNIETDCDGNSKGSIKDKLIKLIGPHSVIGRTVVIHAGTDDLGKGGNDESLKTGNAGPRPACGVIGV 152          
The following BLAST results are available for this feature:
BLAST of CK935660 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 144
Match NameE-valueIdentityDescription
SODC_EMENI9.143e-3551.72Superoxide dismutase [Cu-Zn] OS=Emericella nidulan... [more]
SODC_NPVAC1.194e-3449.30Putative superoxide dismutase [Cu-Zn] OS=Autograph... [more]
SODE_DIRIM1.559e-3447.26Extracellular superoxide dismutase [Cu-Zn] OS=Diro... [more]
SODC_ASPFU2.037e-3451.03Superoxide dismutase [Cu-Zn] OS=Aspergillus fumiga... [more]
SODC_ASPJA1.011e-3360.71Superoxide dismutase [Cu-Zn] (Fragment) OS=Aspergi... [more]
SODC_ASPNG2.252e-3348.97Superoxide dismutase [Cu-Zn] OS=Aspergillus niger ... [more]
SODC_ASPNC2.941e-3348.97Superoxide dismutase [Cu-Zn] OS=Aspergillus niger ... [more]
SODC1_DEBHA2.941e-3347.95Superoxide dismutase [Cu-Zn] 1 OS=Debaryomyces han... [more]
SODE_CAEEL3.841e-3350.39Extracellular superoxide dismutase [Cu-Zn] OS=Caen... [more]
SODC_PAESI5.017e-3347.59Superoxide dismutase [Cu-Zn] OS=Paecilomyces sinen... [more]

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Properties
Property NameValue
Genbank descriptionCGF1004553_A09 Developing fruit 24 DAFB Citrus sinensis cDNA clone T24DAB0004_IIF_A09 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK935660 ID=CK935660; Name=CK935660; organism=Citrus sinensis; type=EST; length=869bp
GCGGGGAGCAATCACCAGAAACACAAAATCGNNNTATCAATTAACATCAT
CCGTCCGTCCGTCCATCCGTCCATCCACTCACCCTCACGCTCAATGCAAG
CCGCAATAGCAGCCATGGCTCACGTTCTCCTCGTAGCAGCACCGCCCTCT
TCATCTCACACACTCCTTGCCACATTGCCAAATCCTAGCAGTATCACGCG
CTCTTCCTCTTCTTCTTCTTCTCATTCTCCCTCGCTTCACTCTGCATTCC
ACGGCGTCTCCCTCAAATTCCCCTCTCGTCTCAACTTATCTCTCGCCGCC
GTGGCCTCCAAGAAGCCGTTGACTGTCGTTGCTGCCGCCAAGAAAGCGGT
GGCTGTTCTTAAAGGCACTTCCAATGTTGAAGGAGTTGTTACGTTGACCC
AAGAAGATGGCGGTCCTACGACTGTCAATGTTCGTGTTACTGGTCTTACT
CCTGGGCCTCACGGGTTACACCTACACGAATATGGTGATACGACAAATGG
GTGTATGTCAACAGGAGCACATTTCAATCCTAATAACATGACACACGGTG
CTCCTAAAGATGAAGTGCGACACGCGGGTGACCTGGGAAACATAGTTGCT
AACGCCAATGGTGTGGCAGAAGCAACAATTGTGGACAACCAGATATCACT
GGATGGTCCAAACACAGTAGTTGGAAGAGCCTTTGTGGTTCATGAGCTTG
AGGATGACCTTGGAAAAGGTGGGCATGAACTTAGTCTAACCACTGGCAAT
GCAGGTGGAAGACTGGCATGCGGTGTCGTTGGCTTGACTCCGGTATGAGA
TCAGCAAAACCAGTGTGGTTGCACTATATGCTGCATGCTTTTTCCAGATT
ATCAATCGGAGCCAAGTAC
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