CK935660

Overview
NameCK935660
Unique NameCK935660
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length869
Libraries
Library NameType
Developing fruit 24 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CK935660_ssr208 microsatellite CK935660_ssr208:208..222. BLAST: Citrus ESTs to Prunus persica proteins V1
CK935660_ssr50 microsatellite CK935660_ssr50:50..61. BLAST: Citrus ESTs to Prunus persica proteins V1
Homology
BLAST of CK935660 vs. ExPASy Swiss-Prot
Match: SODE_HUMAN (Extracellular superoxide dismutase [Cu-Zn] OS=Homo sapiens GN=SOD3 PE=1 SV=2)

HSP 1 Score: 94.7449 bits (234), Expect = 7.033e-19
Identity = 49/107 (45.79%), Postives = 66/107 (61.68%), Query Frame = 1
Query:  466 LHLHEYGDTTNGCMSTGAHFNPNNMTHGAPKDEVRHAGDLGNIVANANGVAEATIVDNQISLDGPNTVVGRAFVVHELEDDLGKGGHELSLTTGNAGGRLACGVVGL 786
            +H+H++GD + GC STG H+NP  + H       +H GD GN     +G           SL GP+++VGRA VVH  EDDLG+GG++ S+  GNAG RLAC VVG+
Sbjct:  113 IHVHQFGDLSQGCESTGPHYNPLAVPHP------QHPGDFGNFAVR-DGSLWRYRAGLAASLAGPHSIVGRAVVVHAGEDDLGRGGNQASVENGNAGRRLACCVVGV 212          
BLAST of CK935660 vs. ExPASy Swiss-Prot
Match: SODE_RABIT (Extracellular superoxide dismutase [Cu-Zn] OS=Oryctolagus cuniculus GN=SOD3 PE=2 SV=2)

HSP 1 Score: 93.5893 bits (231), Expect = 1.567e-18
Identity = 50/106 (47.17%), Postives = 65/106 (61.32%), Query Frame = 1
Query:  466 LHLHEYGDTTNGCMSTGAHFNPNNMTHGAPKDEVRHAGDLGNIVANANGVAEATIVDNQISLDGPNTVVGRAFVVHELEDDLGKGGHELSLTTGNAGGRLACGVVG 783
            +H+H++GD + GC STGAH+NP  + H       +H GD GN     +G           SL GP+++VGRA VVH  EDDLG+GG+  S+  GNAG RLAC VVG
Sbjct:  117 IHVHQFGDLSQGCDSTGAHYNPLAVQHP------QHPGDFGNFAVR-DGRLWKYRSGLAASLAGPHSIVGRAVVVHAGEDDLGRGGNAASVENGNAGPRLACCVVG 215          
BLAST of CK935660 vs. ExPASy Swiss-Prot
Match: SODC_DEIRA (Superoxide dismutase [Cu-Zn] OS=Deinococcus radiodurans GN=sodC PE=3 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 2.588e-13
Identity = 50/152 (32.89%), Postives = 70/152 (46.05%), Query Frame = 1
Query:  358 LKGTSNVEGVVTLTQEDGGPTTVNVRVTGLTPGPHGLHLHEYGDTTNG---------CMSTGAHFNPN-NMTHGAP--KDEVRHAGDLGNIVANANGVAEATIVDNQISLDGPNTVVGRAFVVHELEDDLGKGGHELSLTTGNAGGRLACGV 777
            L  T  V G  T +    G T V++ V+GL  GPHGLH+HE  +   G           + G HF+P  +  H  P  +++  H GDL  I    +G        N++ + GP  V+GR+ V+H   DD            GN+GGR  CGV
Sbjct:   33 LDQTGKVTGTATFSPSPIG-TRVSIEVSGLKAGPHGLHIHENPNCNPGPDAQGQTIPFGAAGGHFDPGASHNHDGPHARNDQGHGGDLPMITVGEDGKGRLNFDTNRLKMTGPTGVLGRSIVIHADADDYQTN------PAGNSGGRERCGV 177          
BLAST of CK935660 vs. ExPASy Swiss-Prot
Match: SODC_CAUCR (Superoxide dismutase [Cu-Zn] OS=Caulobacter crescentus GN=sodC PE=1 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 8.327e-12
Identity = 53/147 (36.05%), Postives = 67/147 (45.58%), Query Frame = 1
Query:  364 GTSNVEGVVTLTQEDGGPTTVNVRVTGLTPGPHGLHLHEYGDT-TNGCMSTGAHFNPNNMT-HGAPKDEVRHAGDLGNIVANANGVAEATIVDNQISLDGPN------TVVGRAFVVHELEDDLGKGGHELSLTTGNAGGRLACGVV 780
            G     G VT+T+   G   + + + GLTPG H  H HE GD  T    S GAH +    T HG    +   +GDL NI A A+G A A I    +SL G           G + VVH   DD        +   G AG R+ACGV+
Sbjct:   34 GDGKDAGAVTVTEAPHG-VLLKLELKGLTPGWHAAHFHEKGDCGTPDFKSAGAHVHTAATTVHGLLNPDANDSGDLPNIFAAADGAATAEIYSPLVSLKGAGGRPALLDADGSSIVVHANPDD------HKTQPIGGAGARVACGVI 173          
The following BLAST results are available for this feature:
BLAST of CK935660 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 144
Match NameE-valueIdentityDescription
SODE_HUMAN7.033e-1945.79Extracellular superoxide dismutase [Cu-Zn] OS=Homo... [more]
SODE_RABIT1.567e-1847.17Extracellular superoxide dismutase [Cu-Zn] OS=Oryc... [more]
SODC_DEIRA2.588e-1332.89Superoxide dismutase [Cu-Zn] OS=Deinococcus radiod... [more]
SODC_CAUCR8.327e-1236.05Superoxide dismutase [Cu-Zn] OS=Caulobacter cresce... [more]

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Properties
Property NameValue
Genbank descriptionCGF1004553_A09 Developing fruit 24 DAFB Citrus sinensis cDNA clone T24DAB0004_IIF_A09 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK935660 ID=CK935660; Name=CK935660; organism=Citrus sinensis; type=EST; length=869bp
GCGGGGAGCAATCACCAGAAACACAAAATCGNNNTATCAATTAACATCAT
CCGTCCGTCCGTCCATCCGTCCATCCACTCACCCTCACGCTCAATGCAAG
CCGCAATAGCAGCCATGGCTCACGTTCTCCTCGTAGCAGCACCGCCCTCT
TCATCTCACACACTCCTTGCCACATTGCCAAATCCTAGCAGTATCACGCG
CTCTTCCTCTTCTTCTTCTTCTCATTCTCCCTCGCTTCACTCTGCATTCC
ACGGCGTCTCCCTCAAATTCCCCTCTCGTCTCAACTTATCTCTCGCCGCC
GTGGCCTCCAAGAAGCCGTTGACTGTCGTTGCTGCCGCCAAGAAAGCGGT
GGCTGTTCTTAAAGGCACTTCCAATGTTGAAGGAGTTGTTACGTTGACCC
AAGAAGATGGCGGTCCTACGACTGTCAATGTTCGTGTTACTGGTCTTACT
CCTGGGCCTCACGGGTTACACCTACACGAATATGGTGATACGACAAATGG
GTGTATGTCAACAGGAGCACATTTCAATCCTAATAACATGACACACGGTG
CTCCTAAAGATGAAGTGCGACACGCGGGTGACCTGGGAAACATAGTTGCT
AACGCCAATGGTGTGGCAGAAGCAACAATTGTGGACAACCAGATATCACT
GGATGGTCCAAACACAGTAGTTGGAAGAGCCTTTGTGGTTCATGAGCTTG
AGGATGACCTTGGAAAAGGTGGGCATGAACTTAGTCTAACCACTGGCAAT
GCAGGTGGAAGACTGGCATGCGGTGTCGTTGGCTTGACTCCGGTATGAGA
TCAGCAAAACCAGTGTGGTTGCACTATATGCTGCATGCTTTTTCCAGATT
ATCAATCGGAGCCAAGTAC
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