CK935660

Overview
NameCK935660
Unique NameCK935660
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length869
Libraries
Library NameType
Developing fruit 24 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CK935660 vs. ExPASy Swiss-Prot
Match: SODC1_ORYSI (Superoxide dismutase [Cu-Zn] 1 OS=Oryza sativa subsp. indica GN=SODCC1 PE=2 SV=2)

HSP 1 Score: 193.741 bits (491), Expect = 1.112e-48
Identity = 88/137 (64.23%), Postives = 104/137 (75.91%), Query Frame = 1
Query:  376 VEGVVTLTQEDGGPTTVNVRVTGLTPGPHGLHLHEYGDTTNGCMSTGAHFNPNNMTHGAPKDEVRHAGDLGNIVANANGVAEATIVDNQISLDGPNTVVGRAFVVHELEDDLGKGGHELSLTTGNAGGRLACGVVGL 786
            V+G +   QE  GPTTV   V+GL PG HG H+H  GDTTNGCMSTG H+NP    HGAP+DE RHAGDLGN+ A  +GVA   +VD+QI L GPN+++GRA VVH   DDLGKGGHELS TTGNAGGR+ACG++GL
Sbjct:   14 VKGTIHFVQEGDGPTTVTGSVSGLKPGLHGFHIHALGDTTNGCMSTGPHYNPAGKEHGAPEDETRHAGDLGNVTAGEDGVANIHVVDSQIPLTGPNSIIGRAVVVHADPDDLGKGGHELSKTTGNAGGRVACGIIGL 150          
BLAST of CK935660 vs. ExPASy Swiss-Prot
Match: SODC5_MAIZE (Superoxide dismutase [Cu-Zn] 4AP OS=Zea mays GN=SODCC.2 PE=2 SV=2)

HSP 1 Score: 193.356 bits (490), Expect = 1.453e-48
Identity = 88/143 (61.54%), Postives = 107/143 (74.83%), Query Frame = 1
Query:  358 LKGTSNVEGVVTLTQEDGGPTTVNVRVTGLTPGPHGLHLHEYGDTTNGCMSTGAHFNPNNMTHGAPKDEVRHAGDLGNIVANANGVAEATIVDNQISLDGPNTVVGRAFVVHELEDDLGKGGHELSLTTGNAGGRLACGVVGL 786
            L  +  V+G +  TQE  GPT V   V+GL PG HG H+H  GDTTNGCMSTG H+NP +  HGAP+DE RHAGDLGN+ A A+GVA   + D+QI L GPN+++GRA VVH   DDLGKGGHELS +TGNAGGR+ACG++GL
Sbjct:    8 LGSSDGVKGTIFFTQEGDGPTAVTGSVSGLKPGLHGFHVHALGDTTNGCMSTGPHYNPASKEHGAPEDENRHAGDLGNVTAGADGVANINVTDSQIPLTGPNSIIGRAVVVHADPDDLGKGGHELSKSTGNAGGRVACGIIGL 150          
BLAST of CK935660 vs. ExPASy Swiss-Prot
Match: SODC_BRAOC (Superoxide dismutase [Cu-Zn] OS=Brassica oleracea var. capitata GN=SODCC PE=1 SV=2)

HSP 1 Score: 192.586 bits (488), Expect = 2.478e-48
Identity = 89/143 (62.24%), Postives = 105/143 (73.43%), Query Frame = 1
Query:  358 LKGTSNVEGVVTLTQEDGGPTTVNVRVTGLTPGPHGLHLHEYGDTTNGCMSTGAHFNPNNMTHGAPKDEVRHAGDLGNIVANANGVAEATIVDNQISLDGPNTVVGRAFVVHELEDDLGKGGHELSLTTGNAGGRLACGVVGL 786
            L  +  V+G +  T E  G TTV   V+GL PG HG H+H  GD TNGCMSTG HFNP+  THGAP+D  RHAGDLGNI+   +G A  TI D+QI L GPN++VGRA VVH   DDLGKGGHELSL+TGNAGGR+ACG++GL
Sbjct:    8 LNSSEGVKGTIFFTHEGNGATTVTGTVSGLRPGLHGFHVHALGDNTNGCMSTGPHFNPDGKTHGAPEDANRHAGDLGNIIVGDDGTATFTITDSQIPLSGPNSIVGRAIVVHADPDDLGKGGHELSLSTGNAGGRVACGIIGL 150          
BLAST of CK935660 vs. ExPASy Swiss-Prot
Match: SODC2_SOLLC (Superoxide dismutase [Cu-Zn] 2 OS=Solanum lycopersicum GN=SODCC.5 PE=3 SV=3)

HSP 1 Score: 192.586 bits (488), Expect = 2.478e-48
Identity = 87/143 (60.84%), Postives = 103/143 (72.03%), Query Frame = 1
Query:  358 LKGTSNVEGVVTLTQEDGGPTTVNVRVTGLTPGPHGLHLHEYGDTTNGCMSTGAHFNPNNMTHGAPKDEVRHAGDLGNIVANANGVAEATIVDNQISLDGPNTVVGRAFVVHELEDDLGKGGHELSLTTGNAGGRLACGVVGL 786
            L  +  V G +  TQ+   PTTVN  ++GL PG HG H+H  GDTTNGCMSTG H+NP    HGAP+DEVRHAGDLGNI    +G A  TI D QI L GP +++GRA VVH   DDLGKGGHELS +TGNAGGR+ACG++GL
Sbjct:    8 LNSSEGVSGTILFTQDGAAPTTVNGNISGLKPGLHGFHVHALGDTTNGCMSTGPHYNPAGKEHGAPEDEVRHAGDLGNITVGEDGTASFTITDKQIPLTGPQSIIGRAVVVHADPDDLGKGGHELSKSTGNAGGRIACGIIGL 150          
BLAST of CK935660 vs. ExPASy Swiss-Prot
Match: SODC_ARATH (Superoxide dismutase [Cu-Zn] OS=Arabidopsis thaliana GN=SODCC PE=1 SV=2)

HSP 1 Score: 191.43 bits (485), Expect = 5.521e-48
Identity = 91/143 (63.64%), Postives = 104/143 (72.73%), Query Frame = 1
Query:  358 LKGTSNVEGVVTLTQEDGGPTTVNVRVTGLTPGPHGLHLHEYGDTTNGCMSTGAHFNPNNMTHGAPKDEVRHAGDLGNIVANANGVAEATIVDNQISLDGPNTVVGRAFVVHELEDDLGKGGHELSLTTGNAGGRLACGVVGL 786
            L  +  V G +  TQE  G TTV+  V+GL PG HG H+H  GDTTNGCMSTG HFNP+  THGAP+D  RHAGDLGNI    +G A  TI D QI L GPN++VGRA VVH   DDLGKGGHELSL TGNAGGR+ACG++GL
Sbjct:    8 LNSSEGVTGTIFFTQEGDGVTTVSGTVSGLKPGLHGFHVHALGDTTNGCMSTGPHFNPDGKTHGAPEDANRHAGDLGNITVGDDGTATFTITDCQIPLTGPNSIVGRAVVVHADPDDLGKGGHELSLATGNAGGRVACGIIGL 150          
BLAST of CK935660 vs. ExPASy Swiss-Prot
Match: SODC_ANACO (Superoxide dismutase [Cu-Zn] OS=Ananas comosus GN=SOD1 PE=2 SV=1)

HSP 1 Score: 191.045 bits (484), Expect = 7.211e-48
Identity = 87/143 (60.84%), Postives = 103/143 (72.03%), Query Frame = 1
Query:  358 LKGTSNVEGVVTLTQEDGGPTTVNVRVTGLTPGPHGLHLHEYGDTTNGCMSTGAHFNPNNMTHGAPKDEVRHAGDLGNIVANANGVAEATIVDNQISLDGPNTVVGRAFVVHELEDDLGKGGHELSLTTGNAGGRLACGVVGL 786
            L  +  V+G +  TQE  GPTTV   ++GL PG HG H+H  GDTTNGCMSTG HFNP    HGAP+DE RHAGDLGN+    +G     IVD+QI L G N+++GRA VVH   DDLGKGGHELS TTGNAGGR+ACG++GL
Sbjct:    8 LGSSEGVKGTIYFTQEGDGPTTVTGSISGLKPGLHGFHVHALGDTTNGCMSTGPHFNPAGNEHGAPEDETRHAGDLGNVTVGEDGTVNVNIVDSQIPLSGSNSIIGRAVVVHADPDDLGKGGHELSKTTGNAGGRVACGIIGL 150          
BLAST of CK935660 vs. ExPASy Swiss-Prot
Match: SODC_PEA (Superoxide dismutase [Cu-Zn] OS=Pisum sativum GN=SODCC PE=2 SV=2)

HSP 1 Score: 190.66 bits (483), Expect = 9.417e-48
Identity = 87/143 (60.84%), Postives = 102/143 (71.33%), Query Frame = 1
Query:  358 LKGTSNVEGVVTLTQEDGGPTTVNVRVTGLTPGPHGLHLHEYGDTTNGCMSTGAHFNPNNMTHGAPKDEVRHAGDLGNIVANANGVAEATIVDNQISLDGPNTVVGRAFVVHELEDDLGKGGHELSLTTGNAGGRLACGVVGL 786
            L  ++ V G +  +QE  GPTTV   + GL PG HG H+H  GDTTNGC+STG HFNPN   HGAP+DE RHAGDLGNI    +G    TI DN I L G N+++GRA VVH   DDLGKGGHELS TTGNAGGR+ACG++GL
Sbjct:    8 LSNSNEVSGTINFSQEGNGPTTVTGTLAGLKPGLHGFHIHALGDTTNGCISTGPHFNPNGKEHGAPEDETRHAGDLGNINVGDDGTVSFTITDNHIPLTGTNSIIGRAVVVHADPDDLGKGGHELSKTTGNAGGRVACGIIGL 150          
BLAST of CK935660 vs. ExPASy Swiss-Prot
Match: SODC2_ORYSJ (Superoxide dismutase [Cu-Zn] 2 OS=Oryza sativa subsp. japonica GN=SODCC2 PE=1 SV=2)

HSP 1 Score: 190.66 bits (483), Expect = 9.417e-48
Identity = 88/143 (61.54%), Postives = 106/143 (74.13%), Query Frame = 1
Query:  358 LKGTSNVEGVVTLTQEDGGPTTVNVRVTGLTPGPHGLHLHEYGDTTNGCMSTGAHFNPNNMTHGAPKDEVRHAGDLGNIVANANGVAEATIVDNQISLDGPNTVVGRAFVVHELEDDLGKGGHELSLTTGNAGGRLACGVVGL 786
            L  +  V+G +  +QE  GPT+V   V+GL PG HG H+H  GDTTNGCMSTG HFNP    HGAP+DE RHAGDLGNI A A+GVA   + D+QI L G ++++GRA VVH   DDLGKGGHELS TTGNAGGR+ACG++GL
Sbjct:    8 LASSEGVKGTIFFSQEGDGPTSVTGSVSGLKPGLHGFHVHALGDTTNGCMSTGPHFNPTGKEHGAPQDENRHAGDLGNITAGADGVANVNVSDSQIPLTGAHSIIGRAVVVHADPDDLGKGGHELSKTTGNAGGRVACGIIGL 150          
BLAST of CK935660 vs. ExPASy Swiss-Prot
Match: SODC_CARPA (Superoxide dismutase [Cu-Zn] OS=Carica papaya GN=SODCC PE=2 SV=1)

HSP 1 Score: 190.274 bits (482), Expect = 1.230e-47
Identity = 87/143 (60.84%), Postives = 104/143 (72.73%), Query Frame = 1
Query:  358 LKGTSNVEGVVTLTQEDGGPTTVNVRVTGLTPGPHGLHLHEYGDTTNGCMSTGAHFNPNNMTHGAPKDEVRHAGDLGNIVANANGVAEATIVDNQISLDGPNTVVGRAFVVHELEDDLGKGGHELSLTTGNAGGRLACGVVGL 786
            L  +  V G +  TQ   GPTTV   ++GL PG HG H+H  GDTTNGCMSTG HFNP    HGAP+D++RHAGDLGN+    +G    +I+D+QI L GPN++VGRA VVH   DDLGKGGHELS TTGNAGGR+ACGV+GL
Sbjct:    8 LSSSEGVSGTIFFTQAADGPTTVTGEISGLKPGHHGFHVHALGDTTNGCMSTGPHFNPAGKEHGAPEDDIRHAGDLGNVNVGDDGKVSFSIIDSQIPLTGPNSIVGRAVVVHADPDDLGKGGHELSKTTGNAGGRVACGVIGL 150          
BLAST of CK935660 vs. ExPASy Swiss-Prot
Match: SODC_NICPL (Superoxide dismutase [Cu-Zn] OS=Nicotiana plumbaginifolia GN=SODCC PE=2 SV=2)

HSP 1 Score: 189.889 bits (481), Expect = 1.606e-47
Identity = 87/143 (60.84%), Postives = 102/143 (71.33%), Query Frame = 1
Query:  358 LKGTSNVEGVVTLTQEDGGPTTVNVRVTGLTPGPHGLHLHEYGDTTNGCMSTGAHFNPNNMTHGAPKDEVRHAGDLGNIVANANGVAEATIVDNQISLDGPNTVVGRAFVVHELEDDLGKGGHELSLTTGNAGGRLACGVVGL 786
            L  +  V G +  TQ+   PTTV   V+GL PG HG H+H  GDTTNGCMSTG H+NP    HGAP+DEVRHAGDLGNI    +G A  T+ D QI L GP +++GRA VVH   DDLGKGGHELS TTGNAGGR+ACG++GL
Sbjct:    8 LSSSEGVSGTIFFTQDGDAPTTVTGNVSGLKPGLHGFHVHALGDTTNGCMSTGPHYNPAGKEHGAPEDEVRHAGDLGNITVGEDGTASFTLTDKQIPLAGPQSIIGRAVVVHADPDDLGKGGHELSKTTGNAGGRVACGIIGL 150          
The following BLAST results are available for this feature:
BLAST of CK935660 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 144
Match NameE-valueIdentityDescription
SODC1_ORYSI1.112e-4864.23Superoxide dismutase [Cu-Zn] 1 OS=Oryza sativa sub... [more]
SODC5_MAIZE1.453e-4861.54Superoxide dismutase [Cu-Zn] 4AP OS=Zea mays GN=SO... [more]
SODC_BRAOC2.478e-4862.24Superoxide dismutase [Cu-Zn] OS=Brassica oleracea ... [more]
SODC2_SOLLC2.478e-4860.84Superoxide dismutase [Cu-Zn] 2 OS=Solanum lycopers... [more]
SODC_ARATH5.521e-4863.64Superoxide dismutase [Cu-Zn] OS=Arabidopsis thalia... [more]
SODC_ANACO7.211e-4860.84Superoxide dismutase [Cu-Zn] OS=Ananas comosus GN=... [more]
SODC_PEA9.417e-4860.84Superoxide dismutase [Cu-Zn] OS=Pisum sativum GN=S... [more]
SODC2_ORYSJ9.417e-4861.54Superoxide dismutase [Cu-Zn] 2 OS=Oryza sativa sub... [more]
SODC_CARPA1.230e-4760.84Superoxide dismutase [Cu-Zn] OS=Carica papaya GN=S... [more]
SODC_NICPL1.606e-4760.84Superoxide dismutase [Cu-Zn] OS=Nicotiana plumbagi... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionCGF1004553_A09 Developing fruit 24 DAFB Citrus sinensis cDNA clone T24DAB0004_IIF_A09 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK935660 ID=CK935660; Name=CK935660; organism=Citrus sinensis; type=EST; length=869bp
GCGGGGAGCAATCACCAGAAACACAAAATCGNNNTATCAATTAACATCAT
CCGTCCGTCCGTCCATCCGTCCATCCACTCACCCTCACGCTCAATGCAAG
CCGCAATAGCAGCCATGGCTCACGTTCTCCTCGTAGCAGCACCGCCCTCT
TCATCTCACACACTCCTTGCCACATTGCCAAATCCTAGCAGTATCACGCG
CTCTTCCTCTTCTTCTTCTTCTCATTCTCCCTCGCTTCACTCTGCATTCC
ACGGCGTCTCCCTCAAATTCCCCTCTCGTCTCAACTTATCTCTCGCCGCC
GTGGCCTCCAAGAAGCCGTTGACTGTCGTTGCTGCCGCCAAGAAAGCGGT
GGCTGTTCTTAAAGGCACTTCCAATGTTGAAGGAGTTGTTACGTTGACCC
AAGAAGATGGCGGTCCTACGACTGTCAATGTTCGTGTTACTGGTCTTACT
CCTGGGCCTCACGGGTTACACCTACACGAATATGGTGATACGACAAATGG
GTGTATGTCAACAGGAGCACATTTCAATCCTAATAACATGACACACGGTG
CTCCTAAAGATGAAGTGCGACACGCGGGTGACCTGGGAAACATAGTTGCT
AACGCCAATGGTGTGGCAGAAGCAACAATTGTGGACAACCAGATATCACT
GGATGGTCCAAACACAGTAGTTGGAAGAGCCTTTGTGGTTCATGAGCTTG
AGGATGACCTTGGAAAAGGTGGGCATGAACTTAGTCTAACCACTGGCAAT
GCAGGTGGAAGACTGGCATGCGGTGTCGTTGGCTTGACTCCGGTATGAGA
TCAGCAAAACCAGTGTGGTTGCACTATATGCTGCATGCTTTTTCCAGATT
ATCAATCGGAGCCAAGTAC
back to top