CK935660

Overview
NameCK935660
Unique NameCK935660
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length869
Libraries
Library NameType
Developing fruit 24 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CK935660_ssr208 microsatellite CK935660_ssr208:208..222. BLAST: Citrus ESTs to Prunus persica proteins V1
CK935660_ssr50 microsatellite CK935660_ssr50:50..61. BLAST: Citrus ESTs to Prunus persica proteins V1
Homology
BLAST of CK935660 vs. ExPASy Swiss-Prot
Match: SODC_SCHMA (Superoxide dismutase [Cu-Zn] OS=Schistosoma mansoni GN=SOD PE=1 SV=1)

HSP 1 Score: 189.504 bits (480), Expect = 2.098e-47
Identity = 87/144 (60.42%), Postives = 106/144 (73.61%), Query Frame = 1
Query:  358 LKGTSNVEGVVTLTQE-DGGPTTVNVRVTGLTPGPHGLHLHEYGDTTNGCMSTGAHFNPNNMTHGAPKDEVRHAGDLGNIVANANGVAEATIVDNQISLDGPNTVVGRAFVVHELEDDLGKGGHELSLTTGNAGGRLACGVVGL 786
            + GT+ V+GVV  TQE D GP  V+   +GL  G HG H+HE+GDTTNGC S GAHFNP    HGAP+D +RH GDLGN+VA A+G A     D  ISL+G ++++GR  V+HE EDDLG+GGHELS  TGNAGGRLACGV+GL
Sbjct:    7 MTGTAGVKGVVKFTQETDNGPVHVHAEFSGLKAGKHGFHVHEFGDTTNGCTSAGAHFNPTKQEHGAPEDSIRHVGDLGNVVAGADGNAVYNATDKLISLNGSHSIIGRTMVIHENEDDLGRGGHELSKVTGNAGGRLACGVIGL 150          
BLAST of CK935660 vs. ExPASy Swiss-Prot
Match: SODC2_MAIZE (Superoxide dismutase [Cu-Zn] 2 OS=Zea mays GN=SODCC.1 PE=2 SV=2)

HSP 1 Score: 188.734 bits (478), Expect = 3.579e-47
Identity = 88/143 (61.54%), Postives = 107/143 (74.83%), Query Frame = 1
Query:  358 LKGTSNVEGVVTLTQEDGGPTTVNVRVTGLTPGPHGLHLHEYGDTTNGCMSTGAHFNPNNMTHGAPKDEVRHAGDLGNIVANANGVAEATIVDNQISLDGPNTVVGRAFVVHELEDDLGKGGHELSLTTGNAGGRLACGVVGL 786
            L GT +V+G +  +QE  GPTTV   ++GL PG HG H+H  GDTTNGCMSTG HFNP    HGAP+DE RHAGDLGN+ A  +GV    I D+QI L GP++++GRA VVH   DDLGKGGHELS +TGNAGGR+ACG++GL
Sbjct:    8 LAGT-DVKGTIFFSQEGDGPTTVTGSISGLKPGLHGFHVHALGDTTNGCMSTGPHFNPVGKEHGAPEDEDRHAGDLGNVTAGEDGVVNVNITDSQIPLAGPHSIIGRAVVVHADPDDLGKGGHELSKSTGNAGGRVACGIIGL 149          
BLAST of CK935660 vs. ExPASy Swiss-Prot
Match: SODC_ZANAE (Superoxide dismutase [Cu-Zn] OS=Zantedeschia aethiopica GN=SODCC PE=2 SV=1)

HSP 1 Score: 188.348 bits (477), Expect = 4.674e-47
Identity = 89/143 (62.24%), Postives = 102/143 (71.33%), Query Frame = 1
Query:  358 LKGTSNVEGVVTLTQEDGGPTTVNVRVTGLTPGPHGLHLHEYGDTTNGCMSTGAHFNPNNMTHGAPKDEVRHAGDLGNIVANANGVAEATIVDNQISLDGPNTVVGRAFVVHELEDDLGKGGHELSLTTGNAGGRLACGVVGL 786
            L G+  V+G V   QE  GPTT+   ++GL PG HG H+H  GDTTNGCMSTG HFNP    HGAP+D  RHAGDLGN+    +G    T+ D+QI L G N+VVGRA VVH   DDLGKGGHELS TTGNAGGRLACGV+GL
Sbjct:    8 LTGSEGVQGTVFFAQEGEGPTTITGSLSGLKPGLHGFHVHALGDTTNGCMSTGPHFNPAGKEHGAPEDGNRHAGDLGNVTVGEDGTVNFTVTDSQIPLTGLNSVVGRAVVVHADSDDLGKGGHELSKTTGNAGGRLACGVIGL 150          
BLAST of CK935660 vs. ExPASy Swiss-Prot
Match: SODC1_SOLLC (Superoxide dismutase [Cu-Zn] 1 OS=Solanum lycopersicum GN=SODCC.1 PE=2 SV=2)

HSP 1 Score: 188.348 bits (477), Expect = 4.674e-47
Identity = 87/143 (60.84%), Postives = 101/143 (70.63%), Query Frame = 1
Query:  358 LKGTSNVEGVVTLTQEDGGPTTVNVRVTGLTPGPHGLHLHEYGDTTNGCMSTGAHFNPNNMTHGAPKDEVRHAGDLGNIVANANGVAEATIVDNQISLDGPNTVVGRAFVVHELEDDLGKGGHELSLTTGNAGGRLACGVVGL 786
            L  +  V G    TQ    PTTVN  ++GL PG HG H+H  GDTTNGCMSTG H+NP    HGAP+DEVRHAGDLGNI    +G A  TI D QI L GP +++GRA VVH   DDLGKGGHELS +TGNAGGR+ACG++GL
Sbjct:    8 LNSSEGVSGTYLFTQVGVAPTTVNGNISGLKPGLHGFHVHALGDTTNGCMSTGPHYNPAGKEHGAPEDEVRHAGDLGNITVGEDGTASFTITDKQIPLTGPQSIIGRAVVVHADPDDLGKGGHELSKSTGNAGGRIACGIIGL 150          
BLAST of CK935660 vs. ExPASy Swiss-Prot
Match: SODC_SOLCS (Superoxide dismutase [Cu-Zn] OS=Solidago canadensis var. scabra GN=SODCC PE=2 SV=3)

HSP 1 Score: 187.193 bits (474), Expect = 1.041e-46
Identity = 87/144 (60.42%), Postives = 105/144 (72.92%), Query Frame = 1
Query:  358 LKGTSNVEGVVTLTQE-DGGPTTVNVRVTGLTPGPHGLHLHEYGDTTNGCMSTGAHFNPNNMTHGAPKDEVRHAGDLGNIVANANGVAEATIVDNQISLDGPNTVVGRAFVVHELEDDLGKGGHELSLTTGNAGGRLACGVVGL 786
            L  +  V G +  +QE +G PTTV   ++GL PGPHG H+H  GDTTNGCMSTG H+NP+   HGAP DE RHAGDLGN+    +G A+ TIVD QI L G  +++GRA VVH   DDLGKGGHELS TTGNAGGR+ACG++GL
Sbjct:    8 LSSSEGVSGTIFFSQEAEGAPTTVTGDLSGLKPGPHGFHVHALGDTTNGCMSTGPHYNPHGKDHGAPDDEHRHAGDLGNVTVGEDGTAKFTIVDKQIPLIGAQSIIGRAVVVHADPDDLGKGGHELSKTTGNAGGRVACGIIGL 151          
BLAST of CK935660 vs. ExPASy Swiss-Prot
Match: SODC_IPOBA (Superoxide dismutase [Cu-Zn] OS=Ipomoea batatas GN=SODCC PE=2 SV=2)

HSP 1 Score: 186.808 bits (473), Expect = 1.360e-46
Identity = 88/143 (61.54%), Postives = 101/143 (70.63%), Query Frame = 1
Query:  358 LKGTSNVEGVVTLTQEDGGPTTVNVRVTGLTPGPHGLHLHEYGDTTNGCMSTGAHFNPNNMTHGAPKDEVRHAGDLGNIVANANGVAEATIVDNQISLDGPNTVVGRAFVVHELEDDLGKGGHELSLTTGNAGGRLACGVVGL 786
            L  +  V G +  +QE  GPTTV   V+GL PG HG H+H  GDTTNGCMSTG HFNP    HGAP D+ RHAGDLGNI    +G A  TI D QI L G N+V+GRA VVH   DDLGKGGHELS +TGNAGGR+ACG++GL
Sbjct:    8 LSSSEGVSGTIFFSQEGDGPTTVTGNVSGLKPGLHGFHVHALGDTTNGCMSTGPHFNPAGKEHGAPGDDNRHAGDLGNITVGEDGTASFTITDKQIPLTGANSVIGRAVVVHGDPDDLGKGGHELSKSTGNAGGRVACGIIGL 150          
BLAST of CK935660 vs. ExPASy Swiss-Prot
Match: SODC_DANRE (Superoxide dismutase [Cu-Zn] OS=Danio rerio GN=sod1 PE=2 SV=1)

HSP 1 Score: 185.652 bits (470), Expect = 3.029e-46
Identity = 85/145 (58.62%), Postives = 106/145 (73.10%), Query Frame = 1
Query:  358 LKGTSNVEGVVTLTQE-DGGPTTVNVRVTGLTPGPHGLHLHEYGDTTNGCMSTGAHFNPNNMTHGAPKDEVRHAGDLGNIVANANGVAEATIVDNQISLDGPNTVVGRAFVVHELEDDLGKGGHELSLTTGNAGGRLACGVVGLT 789
            LKGT  V G V   QE +  P  V   +TGLTPG HG H+H +GD TNGC+S G HFNP++ THG P D VRH GDLGN+ A+A+GVA+  I D  ++L G ++++GR  V+HE EDDLGKGG+E SL TGNAGGRLACGV+G+T
Sbjct:    9 LKGTGEVTGTVYFNQEGEKKPVKVTGEITGLTPGKHGFHVHAFGDNTNGCISAGPHFNPHDKTHGGPTDSVRHVGDLGNVTADASGVAKIEIEDAMLTLSGQHSIIGRTMVIHEKEDDLGKGGNEESLKTGNAGGRLACGVIGIT 153          
BLAST of CK935660 vs. ExPASy Swiss-Prot
Match: SODC_PRIGL (Superoxide dismutase [Cu-Zn] OS=Prionace glauca GN=sod1 PE=1 SV=1)

HSP 1 Score: 185.267 bits (469), Expect = 3.957e-46
Identity = 85/143 (59.44%), Postives = 99/143 (69.23%), Query Frame = 1
Query:  358 LKGTSNVEGVVTLTQEDGGPTTVNVRVTGLTPGPHGLHLHEYGDTTNGCMSTGAHFNPNNMTHGAPKDEVRHAGDLGNIVANANGVAEATIVDNQISLDGPNTVVGRAFVVHELEDDLGKGGHELSLTTGNAGGRLACGVVGL 786
            LKGT  V G V   Q   GP T+   +TGLTPG HG H+H +GD TNGC+S G H+NP +  HG P DE RH GDLGN+ AN NGVAE  I D Q+ L G  +++GR  VVHE EDDLGKGG E SL TGNAG RLACGV+G+
Sbjct:    7 LKGTGEVTGTVLFEQAADGPVTLKGSITGLTPGKHGFHVHAFGDNTNGCISAGPHYNPFSKNHGGPDDEERHVGDLGNVEANGNGVAEFEIKDRQLHLSGERSIIGRTLVVHEKEDDLGKGGDEESLRTGNAGSRLACGVIGI 149          
BLAST of CK935660 vs. ExPASy Swiss-Prot
Match: SODC2_BRAJU (Superoxide dismutase [Cu-Zn] 2 OS=Brassica juncea GN=SODCC2 PE=2 SV=3)

HSP 1 Score: 183.726 bits (465), Expect = 1.151e-45
Identity = 88/143 (61.54%), Postives = 102/143 (71.33%), Query Frame = 1
Query:  358 LKGTSNVEGVVTLTQEDGGPTTVNVRVTGLTPGPHGLHLHEYGDTTNGCMSTGAHFNPNNMTHGAPKDEVRHAGDLGNIVANANGVAEATIVDNQISLDGPNTVVGRAFVVHELEDDLGKGGHELSLTTGNAGGRLACGVVGL 786
            L  +  V+G +   QE  G TTV   V+GL PG HG H+H  GDTTNG MSTG HFNP+   HGAP+D  RHAGDLGNI+   +G A  TI D QI L GPN++VGRA VVH   D LGKGGHELSLTTGNAGGR+ACG++GL
Sbjct:    8 LNSSEGVKGTIFFAQEGEGKTTVTGTVSGLKPGLHGFHVHALGDTTNGSMSTGPHFNPDGKQHGAPEDANRHAGDLGNIIVGDDGTATFTITDCQIPLSGPNSIVGRAVVVHADPDVLGKGGHELSLTTGNAGGRVACGIIGL 150          
BLAST of CK935660 vs. ExPASy Swiss-Prot
Match: SODC_CAPAN (Superoxide dismutase [Cu-Zn] OS=Capsicum annuum GN=SODCC PE=2 SV=1)

HSP 1 Score: 183.341 bits (464), Expect = 1.504e-45
Identity = 84/143 (58.74%), Postives = 100/143 (69.93%), Query Frame = 1
Query:  358 LKGTSNVEGVVTLTQEDGGPTTVNVRVTGLTPGPHGLHLHEYGDTTNGCMSTGAHFNPNNMTHGAPKDEVRHAGDLGNIVANANGVAEATIVDNQISLDGPNTVVGRAFVVHELEDDLGKGGHELSLTTGNAGGRLACGVVGL 786
            L  +  V G +  +Q+   PTTV   V+GL PG HG H+H  GDTTNGCMSTG H+NP    HGAP+DE RHAGDLGNI    +G A  TI D QI L GP +++GR  VVH   DDLGKGGHEL+ TTGNAGGR+ACG++GL
Sbjct:    8 LSSSECVSGTILFSQDGDAPTTVTGNVSGLKPGLHGFHVHALGDTTNGCMSTGPHYNPAGKEHGAPEDENRHAGDLGNITVGEDGTASFTITDEQIPLTGPQSIIGRGVVVHADPDDLGKGGHELTKTTGNAGGRVACGIIGL 150          
The following BLAST results are available for this feature:
BLAST of CK935660 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 144
Match NameE-valueIdentityDescription
SODC_SCHMA2.098e-4760.42Superoxide dismutase [Cu-Zn] OS=Schistosoma manson... [more]
SODC2_MAIZE3.579e-4761.54Superoxide dismutase [Cu-Zn] 2 OS=Zea mays GN=SODC... [more]
SODC_ZANAE4.674e-4762.24Superoxide dismutase [Cu-Zn] OS=Zantedeschia aethi... [more]
SODC1_SOLLC4.674e-4760.84Superoxide dismutase [Cu-Zn] 1 OS=Solanum lycopers... [more]
SODC_SOLCS1.041e-4660.42Superoxide dismutase [Cu-Zn] OS=Solidago canadensi... [more]
SODC_IPOBA1.360e-4661.54Superoxide dismutase [Cu-Zn] OS=Ipomoea batatas GN... [more]
SODC_DANRE3.029e-4658.62Superoxide dismutase [Cu-Zn] OS=Danio rerio GN=sod... [more]
SODC_PRIGL3.957e-4659.44Superoxide dismutase [Cu-Zn] OS=Prionace glauca GN... [more]
SODC2_BRAJU1.151e-4561.54Superoxide dismutase [Cu-Zn] 2 OS=Brassica juncea ... [more]
SODC_CAPAN1.504e-4558.74Superoxide dismutase [Cu-Zn] OS=Capsicum annuum GN... [more]

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Properties
Property NameValue
Genbank descriptionCGF1004553_A09 Developing fruit 24 DAFB Citrus sinensis cDNA clone T24DAB0004_IIF_A09 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK935660 ID=CK935660; Name=CK935660; organism=Citrus sinensis; type=EST; length=869bp
GCGGGGAGCAATCACCAGAAACACAAAATCGNNNTATCAATTAACATCAT
CCGTCCGTCCGTCCATCCGTCCATCCACTCACCCTCACGCTCAATGCAAG
CCGCAATAGCAGCCATGGCTCACGTTCTCCTCGTAGCAGCACCGCCCTCT
TCATCTCACACACTCCTTGCCACATTGCCAAATCCTAGCAGTATCACGCG
CTCTTCCTCTTCTTCTTCTTCTCATTCTCCCTCGCTTCACTCTGCATTCC
ACGGCGTCTCCCTCAAATTCCCCTCTCGTCTCAACTTATCTCTCGCCGCC
GTGGCCTCCAAGAAGCCGTTGACTGTCGTTGCTGCCGCCAAGAAAGCGGT
GGCTGTTCTTAAAGGCACTTCCAATGTTGAAGGAGTTGTTACGTTGACCC
AAGAAGATGGCGGTCCTACGACTGTCAATGTTCGTGTTACTGGTCTTACT
CCTGGGCCTCACGGGTTACACCTACACGAATATGGTGATACGACAAATGG
GTGTATGTCAACAGGAGCACATTTCAATCCTAATAACATGACACACGGTG
CTCCTAAAGATGAAGTGCGACACGCGGGTGACCTGGGAAACATAGTTGCT
AACGCCAATGGTGTGGCAGAAGCAACAATTGTGGACAACCAGATATCACT
GGATGGTCCAAACACAGTAGTTGGAAGAGCCTTTGTGGTTCATGAGCTTG
AGGATGACCTTGGAAAAGGTGGGCATGAACTTAGTCTAACCACTGGCAAT
GCAGGTGGAAGACTGGCATGCGGTGTCGTTGGCTTGACTCCGGTATGAGA
TCAGCAAAACCAGTGTGGTTGCACTATATGCTGCATGCTTTTTCCAGATT
ATCAATCGGAGCCAAGTAC
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