CK935660

Overview
NameCK935660
Unique NameCK935660
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length869
Libraries
Library NameType
Developing fruit 24 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CK935660 vs. ExPASy Swiss-Prot
Match: SODC_RAT (Superoxide dismutase [Cu-Zn] OS=Rattus norvegicus GN=Sod1 PE=1 SV=2)

HSP 1 Score: 172.555 bits (436), Expect = 2.654e-42
Identity = 79/144 (54.86%), Postives = 101/144 (70.14%), Query Frame = 1
Query:  358 LKGTSNVEGVVTLTQEDGG-PTTVNVRVTGLTPGPHGLHLHEYGDTTNGCMSTGAHFNPNNMTHGAPKDEVRHAGDLGNIVANANGVAEATIVDNQISLDGPNTVVGRAFVVHELEDDLGKGGHELSLTTGNAGGRLACGVVGL 786
            LKG   V+GV+   Q+  G P  V+ ++TGLT G HG H+H+YGD T GC + G HFNP++  HG P DE RH GDLGN+ A  +GVA  +I D  ISL G ++++GR  VVHE +DDLGKGG+E S  TGNAG RLACGV+G+
Sbjct:    9 LKGDGPVQGVIHFEQKASGEPVVVSGQITGLTEGEHGFHVHQYGDNTQGCTTAGPHFNPHSKKHGGPADEERHVGDLGNVAAGKDGVANVSIEDRVISLSGEHSIIGRTMVVHEKQDDLGKGGNEESTKTGNAGSRLACGVIGI 152          
BLAST of CK935660 vs. ExPASy Swiss-Prot
Match: SODC_MACMU (Superoxide dismutase [Cu-Zn] OS=Macaca mulatta GN=SOD1 PE=2 SV=3)

HSP 1 Score: 172.17 bits (435), Expect = 3.466e-42
Identity = 81/144 (56.25%), Postives = 100/144 (69.44%), Query Frame = 1
Query:  358 LKGTSNVEGVVTLTQ-EDGGPTTVNVRVTGLTPGPHGLHLHEYGDTTNGCMSTGAHFNPNNMTHGAPKDEVRHAGDLGNIVANANGVAEATIVDNQISLDGPNTVVGRAFVVHELEDDLGKGGHELSLTTGNAGGRLACGVVGL 786
            LKG S V+G +   Q E  GP  V   +TGLT G HG H+H++GD T GC S G HFNP +  HG PKDE RH GDLGN+ A  +GVA+ +  D+ ISL G ++++GR  VVHE  DDLGKGG+E S  TGNAGGRLACGV+G+
Sbjct:    9 LKGDSPVQGTINFEQKESNGPVKVWGSITGLTEGLHGFHVHQFGDNTQGCTSAGPHFNPLSRQHGGPKDEERHVGDLGNVTAGKDGVAKVSFEDSVISLSGDHSIIGRTLVVHEKADDLGKGGNEESKKTGNAGGRLACGVIGI 152          
BLAST of CK935660 vs. ExPASy Swiss-Prot
Match: SODC_MACFU (Superoxide dismutase [Cu-Zn] OS=Macaca fuscata fuscata GN=SOD1 PE=2 SV=3)

HSP 1 Score: 172.17 bits (435), Expect = 3.466e-42
Identity = 81/144 (56.25%), Postives = 100/144 (69.44%), Query Frame = 1
Query:  358 LKGTSNVEGVVTLTQ-EDGGPTTVNVRVTGLTPGPHGLHLHEYGDTTNGCMSTGAHFNPNNMTHGAPKDEVRHAGDLGNIVANANGVAEATIVDNQISLDGPNTVVGRAFVVHELEDDLGKGGHELSLTTGNAGGRLACGVVGL 786
            LKG S V+G +   Q E  GP  V   +TGLT G HG H+H++GD T GC S G HFNP +  HG PKDE RH GDLGN+ A  +GVA+ +  D+ ISL G ++++GR  VVHE  DDLGKGG+E S  TGNAGGRLACGV+G+
Sbjct:    9 LKGDSPVQGTINFEQKESNGPVKVWGSITGLTEGLHGFHVHQFGDNTQGCTSAGPHFNPLSRQHGGPKDEERHVGDLGNVTAGKDGVAKVSFEDSVISLSGDHSIIGRTLVVHEKADDLGKGGNEESKKTGNAGGRLACGVIGI 152          
BLAST of CK935660 vs. ExPASy Swiss-Prot
Match: SODC_MACFA (Superoxide dismutase [Cu-Zn] OS=Macaca fascicularis GN=SOD1 PE=2 SV=3)

HSP 1 Score: 172.17 bits (435), Expect = 3.466e-42
Identity = 81/144 (56.25%), Postives = 100/144 (69.44%), Query Frame = 1
Query:  358 LKGTSNVEGVVTLTQ-EDGGPTTVNVRVTGLTPGPHGLHLHEYGDTTNGCMSTGAHFNPNNMTHGAPKDEVRHAGDLGNIVANANGVAEATIVDNQISLDGPNTVVGRAFVVHELEDDLGKGGHELSLTTGNAGGRLACGVVGL 786
            LKG S V+G +   Q E  GP  V   +TGLT G HG H+H++GD T GC S G HFNP +  HG PKDE RH GDLGN+ A  +GVA+ +  D+ ISL G ++++GR  VVHE  DDLGKGG+E S  TGNAGGRLACGV+G+
Sbjct:    9 LKGDSPVQGTINFEQKESNGPVKVWGSITGLTEGLHGFHVHQFGDNTQGCTSAGPHFNPLSRQHGGPKDEERHVGDLGNVTAGKDGVAKVSFEDSVISLSGDHSIIGRTLVVHEKADDLGKGGNEESKKTGNAGGRLACGVIGI 152          
BLAST of CK935660 vs. ExPASy Swiss-Prot
Match: SODC_BOMMO (Superoxide dismutase [Cu-Zn] OS=Bombyx mori PE=1 SV=3)

HSP 1 Score: 171.785 bits (434), Expect = 4.527e-42
Identity = 83/143 (58.04%), Postives = 98/143 (68.53%), Query Frame = 1
Query:  373 NVEGVVTLTQEDG-GPTTVNVRVTGLTPGPHGLHLHEYGDTTNGCMSTGAHFNPNNMTHGAPKDEVRHAGDLGNIVA-NANGVAEATIVDNQISLDGPNTVVGRAFVVHELEDDLGKGGHELSLTTGNAGGRLACGVVGLTPV 795
            +V G V   Q+D   P  V+  V GLT G HG H+HE+GD TNGC S GAHFNP    HG P   VRH GDLGNI A   +GV + +I D+QISL GPN+++GR  VVH   DDLG GGHELS TTGNAGGR+ACGV+GL  +
Sbjct:   12 DVSGTVFFDQQDEKSPVVVSGEVQGLTKGKHGFHVHEFGDNTNGCTSAGAHFNPEKQDHGGPSSAVRHVGDLGNIEAIEDSGVTKVSIQDSQISLHGPNSIIGRTLVVHADPDDLGLGGHELSKTTGNAGGRIACGVIGLAKI 154          
BLAST of CK935660 vs. ExPASy Swiss-Prot
Match: SODC_CHICK (Superoxide dismutase [Cu-Zn] OS=Gallus gallus GN=SOD1 PE=1 SV=3)

HSP 1 Score: 171.4 bits (433), Expect = 5.912e-42
Identity = 80/143 (55.94%), Postives = 97/143 (67.83%), Query Frame = 1
Query:  358 LKGTSNVEGVVTLTQEDGGPTTVNVRVTGLTPGPHGLHLHEYGDTTNGCMSTGAHFNPNNMTHGAPKDEVRHAGDLGNIVANANGVAEATIVDNQISLDGPNTVVGRAFVVHELEDDLGKGGHELSLTTGNAGGRLACGVVGL 786
            +KG + VEGV+   Q+  GP  V  ++TGL+ G HG H+HE+GD TNGC S GAHFNP    HG PKD  RH GDLGN+ A   GVAE  I D+ ISL GP+ ++GR  VVH   DDLG+GG   S  TGNAG RLACGV+G+
Sbjct:   10 MKGDAPVEGVIHFQQQGSGPVKVTGKITGLSDGDHGFHVHEFGDNTNGCTSAGAHFNPEGKQHGGPKDADRHVGDLGNVTAK-GGVAEVEIEDSVISLTGPHCIIGRTMVVHAKSDDLGRGGDNESKLTGNAGPRLACGVIGI 151          
BLAST of CK935660 vs. ExPASy Swiss-Prot
Match: SODC_MOUSE (Superoxide dismutase [Cu-Zn] OS=Mus musculus GN=Sod1 PE=1 SV=2)

HSP 1 Score: 171.014 bits (432), Expect = 7.722e-42
Identity = 78/144 (54.17%), Postives = 100/144 (69.44%), Query Frame = 1
Query:  358 LKGTSNVEGVVTLTQEDGG-PTTVNVRVTGLTPGPHGLHLHEYGDTTNGCMSTGAHFNPNNMTHGAPKDEVRHAGDLGNIVANANGVAEATIVDNQISLDGPNTVVGRAFVVHELEDDLGKGGHELSLTTGNAGGRLACGVVGL 786
            LKG   V+G +   Q+  G P  ++ ++TGLT G HG H+H+YGD T GC S G HFNP++  HG P DE RH GDLGN+ A  +GVA  +I D  ISL G ++++GR  VVHE +DDLGKGG+E S  TGNAG RLACGV+G+
Sbjct:    9 LKGDGPVQGTIHFEQKASGEPVVLSGQITGLTEGQHGFHVHQYGDNTQGCTSAGPHFNPHSKKHGGPADEERHVGDLGNVTAGKDGVANVSIEDRVISLSGEHSIIGRTMVVHEKQDDLGKGGNEESTKTGNAGSRLACGVIGI 152          
BLAST of CK935660 vs. ExPASy Swiss-Prot
Match: SODC_DROWI (Superoxide dismutase [Cu-Zn] OS=Drosophila willistoni GN=Sod PE=3 SV=2)

HSP 1 Score: 170.629 bits (431), Expect = 1.008e-41
Identity = 80/142 (56.34%), Postives = 99/142 (69.72%), Query Frame = 1
Query:  373 NVEGVVTLTQEDGG-PTTVNVRVTGLTPGPHGLHLHEYGDTTNGCMSTGAHFNPNNMTHGAPKDEVRHAGDLGNIVANANGVAEATIVDNQISLDGPNTVVGRAFVVHELEDDLGKGGHELSLTTGNAGGRLACGVVGLTPV 795
            + +G V   QED G P  V   VTGL  G HG H+HE+GD TNGCMS+G HFNP++  HGAP DE RH GDLGNI A+ +G     I D++I+L G N+++GR  VVH   DDLGKGGHELS TTGNAG R+ CGV+G+  +
Sbjct:   12 DAKGTVFFEQEDNGAPVKVTGEVTGLGKGLHGFHVHEFGDNTNGCMSSGPHFNPHSKEHGAPGDENRHLGDLGNIEASGSGPTAVNITDSKITLVGANSIIGRTVVVHADPDDLGKGGHELSKTTGNAGARIGCGVIGIAKI 153          
BLAST of CK935660 vs. ExPASy Swiss-Prot
Match: SODC_DROVI (Superoxide dismutase [Cu-Zn] OS=Drosophila virilis GN=Sod PE=3 SV=2)

HSP 1 Score: 169.859 bits (429), Expect = 1.720e-41
Identity = 80/142 (56.34%), Postives = 97/142 (68.31%), Query Frame = 1
Query:  373 NVEGVVTLTQE-DGGPTTVNVRVTGLTPGPHGLHLHEYGDTTNGCMSTGAHFNPNNMTHGAPKDEVRHAGDLGNIVANANGVAEATIVDNQISLDGPNTVVGRAFVVHELEDDLGKGGHELSLTTGNAGGRLACGVVGLTPV 795
            + +G V   QE +G P  V   VTGL  G HG H+HE+GD TNGCMS+G HFNP    HGAP DE RH GDLGNI+AN +G     I D +I+L G N+++GR  VVH   DDLGKGGHELS TTGNAG R+ CGV+G+  +
Sbjct:   12 DAKGTVFFEQEGEGCPVKVTGEVTGLAKGQHGFHVHEFGDNTNGCMSSGPHFNPYQKEHGAPTDENRHLGDLGNIIANGDGPTPVNICDCKITLLGANSIIGRTVVVHADPDDLGKGGHELSKTTGNAGARIGCGVIGIAKI 153          
BLAST of CK935660 vs. ExPASy Swiss-Prot
Match: SODE_BRUPA (Extracellular superoxide dismutase [Cu-Zn] OS=Brugia pahangi PE=2 SV=1)

HSP 1 Score: 169.474 bits (428), Expect = 2.247e-41
Identity = 79/142 (55.63%), Postives = 101/142 (71.13%), Query Frame = 1
Query:  373 NVEGVVTLTQEDGGPTTVNVRVTGLTPGPHGLHLHEYGDTTNGCMSTGAHFNPNNMTHGAPKDEVRHAGDLGNIVANANGVAEATIVDNQISLDGPNTVVGRAFVVHELEDDLGKG---GHELSLTTGNAGGRLACGVVGLT 789
            N+ G +   Q+D   TT++  + GLTPG HG H+H+YGDTTNGC+S G HFNP N THG P DE+RH GDLGNIVA A+G A   I D  + L GPN+++GR+ VVH  +DDLGKG     + SL TGNAGGR+ACG+V ++
Sbjct:   58 NINGTIHF-QQDKNSTTISGEIKGLTPGLHGFHVHQYGDTTNGCISAGPHFNPYNKTHGDPTDEMRHVGDLGNIVAGADGTAHIDISDKHVQLLGPNSIIGRSLVVHADQDDLGKGVGDKKDESLKTGNAGGRVACGIVAIS 198          
The following BLAST results are available for this feature:
BLAST of CK935660 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 144
Match NameE-valueIdentityDescription
SODC_RAT2.654e-4254.86Superoxide dismutase [Cu-Zn] OS=Rattus norvegicus ... [more]
SODC_MACMU3.466e-4256.25Superoxide dismutase [Cu-Zn] OS=Macaca mulatta GN=... [more]
SODC_MACFU3.466e-4256.25Superoxide dismutase [Cu-Zn] OS=Macaca fuscata fus... [more]
SODC_MACFA3.466e-4256.25Superoxide dismutase [Cu-Zn] OS=Macaca fasciculari... [more]
SODC_BOMMO4.527e-4258.04Superoxide dismutase [Cu-Zn] OS=Bombyx mori PE=1 S... [more]
SODC_CHICK5.912e-4255.94Superoxide dismutase [Cu-Zn] OS=Gallus gallus GN=S... [more]
SODC_MOUSE7.722e-4254.17Superoxide dismutase [Cu-Zn] OS=Mus musculus GN=So... [more]
SODC_DROWI1.008e-4156.34Superoxide dismutase [Cu-Zn] OS=Drosophila willist... [more]
SODC_DROVI1.720e-4156.34Superoxide dismutase [Cu-Zn] OS=Drosophila virilis... [more]
SODE_BRUPA2.247e-4155.63Extracellular superoxide dismutase [Cu-Zn] OS=Brug... [more]

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Properties
Property NameValue
Genbank descriptionCGF1004553_A09 Developing fruit 24 DAFB Citrus sinensis cDNA clone T24DAB0004_IIF_A09 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK935660 ID=CK935660; Name=CK935660; organism=Citrus sinensis; type=EST; length=869bp
GCGGGGAGCAATCACCAGAAACACAAAATCGNNNTATCAATTAACATCAT
CCGTCCGTCCGTCCATCCGTCCATCCACTCACCCTCACGCTCAATGCAAG
CCGCAATAGCAGCCATGGCTCACGTTCTCCTCGTAGCAGCACCGCCCTCT
TCATCTCACACACTCCTTGCCACATTGCCAAATCCTAGCAGTATCACGCG
CTCTTCCTCTTCTTCTTCTTCTCATTCTCCCTCGCTTCACTCTGCATTCC
ACGGCGTCTCCCTCAAATTCCCCTCTCGTCTCAACTTATCTCTCGCCGCC
GTGGCCTCCAAGAAGCCGTTGACTGTCGTTGCTGCCGCCAAGAAAGCGGT
GGCTGTTCTTAAAGGCACTTCCAATGTTGAAGGAGTTGTTACGTTGACCC
AAGAAGATGGCGGTCCTACGACTGTCAATGTTCGTGTTACTGGTCTTACT
CCTGGGCCTCACGGGTTACACCTACACGAATATGGTGATACGACAAATGG
GTGTATGTCAACAGGAGCACATTTCAATCCTAATAACATGACACACGGTG
CTCCTAAAGATGAAGTGCGACACGCGGGTGACCTGGGAAACATAGTTGCT
AACGCCAATGGTGTGGCAGAAGCAACAATTGTGGACAACCAGATATCACT
GGATGGTCCAAACACAGTAGTTGGAAGAGCCTTTGTGGTTCATGAGCTTG
AGGATGACCTTGGAAAAGGTGGGCATGAACTTAGTCTAACCACTGGCAAT
GCAGGTGGAAGACTGGCATGCGGTGTCGTTGGCTTGACTCCGGTATGAGA
TCAGCAAAACCAGTGTGGTTGCACTATATGCTGCATGCTTTTTCCAGATT
ATCAATCGGAGCCAAGTAC
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