CK935660

Overview
NameCK935660
Unique NameCK935660
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length869
Libraries
Library NameType
Developing fruit 24 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CK935660 vs. ExPASy Swiss-Prot
Match: SODC_PANTR (Superoxide dismutase [Cu-Zn] OS=Pan troglodytes GN=SOD1 PE=2 SV=2)

HSP 1 Score: 169.474 bits (428), Expect = 2.247e-41
Identity = 80/144 (55.56%), Postives = 99/144 (68.75%), Query Frame = 1
Query:  358 LKGTSNVEGVVTLTQ-EDGGPTTVNVRVTGLTPGPHGLHLHEYGDTTNGCMSTGAHFNPNNMTHGAPKDEVRHAGDLGNIVANANGVAEATIVDNQISLDGPNTVVGRAFVVHELEDDLGKGGHELSLTTGNAGGRLACGVVGL 786
            LKG   V+G++   Q E  GP  V   + GLT G HG H+HE+GD T GC S G HFNP +  HG PKDE RH GDLGN+ A+ +GVA+ +I D+ ISL G + ++GR  VVHE  DDLGKGG+E S  TGNAG RLACGV+G+
Sbjct:    9 LKGDGPVQGIINFEQKESNGPVKVWGSIKGLTEGLHGFHVHEFGDNTAGCTSAGPHFNPLSRKHGGPKDEERHVGDLGNVTADKDGVADVSIEDSVISLSGDHCIIGRTLVVHEKADDLGKGGNEESTKTGNAGSRLACGVIGI 152          
BLAST of CK935660 vs. ExPASy Swiss-Prot
Match: SODC_HUMAN (Superoxide dismutase [Cu-Zn] OS=Homo sapiens GN=SOD1 PE=1 SV=2)

HSP 1 Score: 169.474 bits (428), Expect = 2.247e-41
Identity = 80/144 (55.56%), Postives = 99/144 (68.75%), Query Frame = 1
Query:  358 LKGTSNVEGVVTLTQ-EDGGPTTVNVRVTGLTPGPHGLHLHEYGDTTNGCMSTGAHFNPNNMTHGAPKDEVRHAGDLGNIVANANGVAEATIVDNQISLDGPNTVVGRAFVVHELEDDLGKGGHELSLTTGNAGGRLACGVVGL 786
            LKG   V+G++   Q E  GP  V   + GLT G HG H+HE+GD T GC S G HFNP +  HG PKDE RH GDLGN+ A+ +GVA+ +I D+ ISL G + ++GR  VVHE  DDLGKGG+E S  TGNAG RLACGV+G+
Sbjct:    9 LKGDGPVQGIINFEQKESNGPVKVWGSIKGLTEGLHGFHVHEFGDNTAGCTSAGPHFNPLSRKHGGPKDEERHVGDLGNVTADKDGVADVSIEDSVISLSGDHCIIGRTLVVHEKADDLGKGGNEESTKTGNAGSRLACGVIGI 152          
BLAST of CK935660 vs. ExPASy Swiss-Prot
Match: SODC_CANGA (Superoxide dismutase [Cu-Zn] OS=Candida glabrata GN=SOD1 PE=3 SV=3)

HSP 1 Score: 169.474 bits (428), Expect = 2.247e-41
Identity = 84/146 (57.53%), Postives = 102/146 (69.86%), Query Frame = 1
Query:  358 LKGTSNVEGVVTLTQ-EDGGPTTVNVRVTGLTPGPH-GLHLHEYGDTTNGCMSTGAHFNPNNMTHGAPKDEVRHAGDLGNIVANANGVAEATIVDNQISLDGPNTVVGRAFVVHELEDDLGKGGHELSLTTGNAGGRLACGVVGLT 789
            L+G++ V GVVTL Q  +  PTT+   + G  P    G H+HE+GD TNGC+S G HFNP   THGAP+DE RH GDLGNI  +A GVA+  I D+ + L GP +VVGR+ VVH   DDLGKGG+E SL TGNAG R ACGV+GLT
Sbjct:    8 LRGSAGVSGVVTLEQASEQDPTTITYEIAGNDPNAERGFHIHEFGDVTNGCVSAGPHFNPFKKTHGAPQDENRHVGDLGNIKTDAQGVAKGVITDSLVKLIGPTSVVGRSVVVHAGTDDLGKGGNEESLKTGNAGPRPACGVIGLT 153          
BLAST of CK935660 vs. ExPASy Swiss-Prot
Match: SODC_SHEEP (Superoxide dismutase [Cu-Zn] OS=Ovis aries GN=SOD1 PE=1 SV=2)

HSP 1 Score: 168.703 bits (426), Expect = 3.832e-41
Identity = 80/145 (55.17%), Postives = 97/145 (66.90%), Query Frame = 1
Query:  358 LKGTSNVEGVVTLTQEDGGPTTVNVRVTGLTPGPHGLHLHEYGDTTNGCMSTGAHFNPNNMTHGAPKDEVRHAGDLGNIVANANGVAEATIVDNQISLDGPNTVVGRAFVVHELEDDLGKGGHELSLTTGNAGGRLACGVVGLTP 792
            LKG   V+G +   +  G    V   +TGLT G HG H+H++GD T GC S G HFNP +  HG PKDE RH GDLGN+ A+ NGVA   IVD  ISL G  +++GR  VVHE  DDLG+GG+E S  TGNAGGRLACGV+G+ P
Sbjct:    9 LKGDGPVQGTIRF-EAKGDKVVVTGSITGLTEGDHGFHVHQFGDNTQGCTSAGPHFNPLSKKHGGPKDEERHVGDLGNVKADKNGVAIVDIVDPLISLSGEYSIIGRTMVVHEKPDDLGRGGNEESTKTGNAGGRLACGVIGIAP 152          
BLAST of CK935660 vs. ExPASy Swiss-Prot
Match: SODC_CALJA (Superoxide dismutase [Cu-Zn] OS=Callithrix jacchus GN=SOD1 PE=2 SV=3)

HSP 1 Score: 168.703 bits (426), Expect = 3.832e-41
Identity = 79/144 (54.86%), Postives = 99/144 (68.75%), Query Frame = 1
Query:  358 LKGTSNVEGVVTLTQ-EDGGPTTVNVRVTGLTPGPHGLHLHEYGDTTNGCMSTGAHFNPNNMTHGAPKDEVRHAGDLGNIVANANGVAEATIVDNQISLDGPNTVVGRAFVVHELEDDLGKGGHELSLTTGNAGGRLACGVVGL 786
            LKG   V+G +   Q E  GP  V   +TGL  G HG H+H++GD T GC S G HFNP +  HG P+DE RH GDLGN+ A  +GVA+ +I D+ ISL G ++++GR  VVHE  DDLGKGG+E S  TGNAGGRLACGV+G+
Sbjct:    9 LKGDGPVQGTINFEQKESNGPVKVWGSITGLAEGLHGFHVHQFGDNTQGCTSAGPHFNPLSRKHGGPEDEERHVGDLGNVTAGKDGVAKVSIEDSVISLSGDHSIIGRTLVVHEKADDLGKGGNEESKKTGNAGGRLACGVIGI 152          
BLAST of CK935660 vs. ExPASy Swiss-Prot
Match: SODC_CEBAP (Superoxide dismutase [Cu-Zn] OS=Cebus apella GN=SOD1 PE=2 SV=3)

HSP 1 Score: 166.777 bits (421), Expect = 1.456e-40
Identity = 78/144 (54.17%), Postives = 98/144 (68.06%), Query Frame = 1
Query:  358 LKGTSNVEGVVTLTQ-EDGGPTTVNVRVTGLTPGPHGLHLHEYGDTTNGCMSTGAHFNPNNMTHGAPKDEVRHAGDLGNIVANANGVAEATIVDNQISLDGPNTVVGRAFVVHELEDDLGKGGHELSLTTGNAGGRLACGVVGL 786
            LKG   V+G +   Q E  GP  V   +TGL  G HG H+H++GD T GC S G HFNP +  HG P+DE RH GDLGN+ A  +GVA+ +I D+ ISL G ++++GR  VVHE  DDLGKGG+E S  TGNAG RLACGV+G+
Sbjct:    9 LKGDGPVQGTINFEQKESNGPVKVWGSITGLAEGLHGFHVHQFGDNTQGCTSAGPHFNPLSRKHGGPEDEERHVGDLGNVTAGKDGVAKVSIEDSVISLSGDHSIIGRTLVVHEKADDLGKGGNEESTKTGNAGSRLACGVIGI 152          
BLAST of CK935660 vs. ExPASy Swiss-Prot
Match: SODC1_DICDI (Superoxide dismutase [Cu-Zn] 1 OS=Dictyostelium discoideum GN=sodA PE=2 SV=1)

HSP 1 Score: 166.392 bits (420), Expect = 1.902e-40
Identity = 84/145 (57.93%), Postives = 98/145 (67.59%), Query Frame = 1
Query:  358 LKGTSNVEGVVTLTQED-GGPTTVNVRVTGLTPGPHGLHLHEYGDTTNGCMSTGAHFNPNNMTHGAPKDEVRHAGDLGNIVANANGVAEATIVDNQISLDGPNTVVGRAFVVHELEDDLGKGGHELSLTTGNAGGRLACGVVGLT 789
            +KG   V GVV  TQE+   P TVN  +TGL  G HG H+H +GDTTNGC+S G HFNP    HGAP DE RH GDLGNIVA+     + TI D  ISL G +T+VGR  VVH  +DDLGKGG   SLTTG AG RL CGV+G++
Sbjct:    9 IKG-EKVNGVVKFTQENKDSPVTVNYDITGLEKGEHGFHVHAFGDTTNGCVSAGPHFNPFGKNHGAPSDEDRHVGDLGNIVADGESNTKGTISDKIISLFGEHTIVGRTMVVHADQDDLGKGGKPDSLTTGAAGARLGCGVIGVS 152          
BLAST of CK935660 vs. ExPASy Swiss-Prot
Match: SODC_ONCVO (Superoxide dismutase [Cu-Zn] OS=Onchocerca volvulus GN=sod-1 PE=3 SV=1)

HSP 1 Score: 166.007 bits (419), Expect = 2.484e-40
Identity = 80/141 (56.74%), Postives = 99/141 (70.21%), Query Frame = 1
Query:  376 VEGVVTLTQE-DGGPTTVNVRVTGLTPGPHGLHLHEYGDTTNGCMSTGAHFNPNNMTHGAPKDEVRHAGDLGNIVANANGVAEATIVDNQISLDGPNTVVGRAFVVHELEDDLGKG---GHELSLTTGNAGGRLACGVVGL 786
            V G++   Q+ +G PTTV   V GLTPG HG H+H+YGDTTNGC+S G HFNP N THG   DE+RH GDLGNI A A+G A  +I D  I L GPN+++GR+ VVH  +DDLGKG     + SL TGNAG R+ACG+V +
Sbjct:   14 VSGIIRFKQDKEGLPTTVTGEVKGLTPGLHGFHIHQYGDTTNGCISAGPHFNPYNKTHGDRTDEIRHVGDLGNIEAGADGTAHISISDQHIQLLGPNSIIGRSIVVHADQDDLGKGVGAKKDESLKTGNAGARVACGIVAI 154          
BLAST of CK935660 vs. ExPASy Swiss-Prot
Match: SODC_CANFA (Superoxide dismutase [Cu-Zn] OS=Canis familiaris GN=SOD1 PE=2 SV=1)

HSP 1 Score: 166.007 bits (419), Expect = 2.484e-40
Identity = 76/143 (53.15%), Postives = 96/143 (67.13%), Query Frame = 1
Query:  358 LKGTSNVEGVVTLTQEDGGPTTVNVRVTGLTPGPHGLHLHEYGDTTNGCMSTGAHFNPNNMTHGAPKDEVRHAGDLGNIVANANGVAEATIVDNQISLDGPNTVVGRAFVVHELEDDLGKGGHELSLTTGNAGGRLACGVVGL 786
            LKG   VEG +   Q+  GP  V+  +TGLT G HG H+H++ D T GC S G HFNP +  HG PKD+ RH GDLGN+ A  +GVA  +I D+ I+L G  +++GR  VVHE  DDLGKG +E S  TGNAG RLACGV+G+
Sbjct:    9 LKGQGPVEGTIHFVQKGSGPVVVSGTITGLTEGEHGFHVHQFEDXTQGCTSAGPHFNPLSKKHGGPKDQERHVGDLGNVTAGKDGVAIVSIEDSLIALSGDYSIIGRTMVVHEKRDDLGKGDNEESTQTGNAGSRLACGVIGI 151          
BLAST of CK935660 vs. ExPASy Swiss-Prot
Match: SODE_ONCVO (Extracellular superoxide dismutase [Cu-Zn] OS=Onchocerca volvulus GN=sod-4 PE=1 SV=1)

HSP 1 Score: 165.622 bits (418), Expect = 3.244e-40
Identity = 82/150 (54.67%), Postives = 100/150 (66.67%), Query Frame = 1
Query:  358 LKGTSNVEGVVTLTQEDGGP-TTVNVRVTGLTPGPHGLHLHEYGDTTNGCMSTGAHFNPNNMTHGAPKDEVRHAGDLGNIVANANGVAEATIVDNQISLDGPNTVVGRAFVVHELEDDLGKGG---HELSLTTGNAGGRLACGVVGLTPV 795
            L+G + V G++   Q  GG  TT++  V+GLTPG HG H+H+YGD TNGC S G H+NP   THG P D ++H GDLGNIVA ANGVAE  I    I L GP +V+G + VVH   DDLG+G     E SL TGNAG RLACGV+G+  V
Sbjct:   51 LRGDAGVSGIIYFQQGSGGSITTISGSVSGLTPGLHGFHVHQYGDQTNGCTSAGDHYNPFGKTHGGPNDRIKHIGDLGNIVAGANGVAEVYINSYDIKLRGPLSVIGHSLVVHANTDDLGQGTGNMREESLKTGNAGSRLACGVIGIAAV 200          
The following BLAST results are available for this feature:
BLAST of CK935660 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 144
Match NameE-valueIdentityDescription
SODC_PANTR2.247e-4155.56Superoxide dismutase [Cu-Zn] OS=Pan troglodytes GN... [more]
SODC_HUMAN2.247e-4155.56Superoxide dismutase [Cu-Zn] OS=Homo sapiens GN=SO... [more]
SODC_CANGA2.247e-4157.53Superoxide dismutase [Cu-Zn] OS=Candida glabrata G... [more]
SODC_SHEEP3.832e-4155.17Superoxide dismutase [Cu-Zn] OS=Ovis aries GN=SOD1... [more]
SODC_CALJA3.832e-4154.86Superoxide dismutase [Cu-Zn] OS=Callithrix jacchus... [more]
SODC_CEBAP1.456e-4054.17Superoxide dismutase [Cu-Zn] OS=Cebus apella GN=SO... [more]
SODC1_DICDI1.902e-4057.93Superoxide dismutase [Cu-Zn] 1 OS=Dictyostelium di... [more]
SODC_ONCVO2.484e-4056.74Superoxide dismutase [Cu-Zn] OS=Onchocerca volvulu... [more]
SODC_CANFA2.484e-4053.15Superoxide dismutase [Cu-Zn] OS=Canis familiaris G... [more]
SODE_ONCVO3.244e-4054.67Extracellular superoxide dismutase [Cu-Zn] OS=Onch... [more]

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Properties
Property NameValue
Genbank descriptionCGF1004553_A09 Developing fruit 24 DAFB Citrus sinensis cDNA clone T24DAB0004_IIF_A09 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK935660 ID=CK935660; Name=CK935660; organism=Citrus sinensis; type=EST; length=869bp
GCGGGGAGCAATCACCAGAAACACAAAATCGNNNTATCAATTAACATCAT
CCGTCCGTCCGTCCATCCGTCCATCCACTCACCCTCACGCTCAATGCAAG
CCGCAATAGCAGCCATGGCTCACGTTCTCCTCGTAGCAGCACCGCCCTCT
TCATCTCACACACTCCTTGCCACATTGCCAAATCCTAGCAGTATCACGCG
CTCTTCCTCTTCTTCTTCTTCTCATTCTCCCTCGCTTCACTCTGCATTCC
ACGGCGTCTCCCTCAAATTCCCCTCTCGTCTCAACTTATCTCTCGCCGCC
GTGGCCTCCAAGAAGCCGTTGACTGTCGTTGCTGCCGCCAAGAAAGCGGT
GGCTGTTCTTAAAGGCACTTCCAATGTTGAAGGAGTTGTTACGTTGACCC
AAGAAGATGGCGGTCCTACGACTGTCAATGTTCGTGTTACTGGTCTTACT
CCTGGGCCTCACGGGTTACACCTACACGAATATGGTGATACGACAAATGG
GTGTATGTCAACAGGAGCACATTTCAATCCTAATAACATGACACACGGTG
CTCCTAAAGATGAAGTGCGACACGCGGGTGACCTGGGAAACATAGTTGCT
AACGCCAATGGTGTGGCAGAAGCAACAATTGTGGACAACCAGATATCACT
GGATGGTCCAAACACAGTAGTTGGAAGAGCCTTTGTGGTTCATGAGCTTG
AGGATGACCTTGGAAAAGGTGGGCATGAACTTAGTCTAACCACTGGCAAT
GCAGGTGGAAGACTGGCATGCGGTGTCGTTGGCTTGACTCCGGTATGAGA
TCAGCAAAACCAGTGTGGTTGCACTATATGCTGCATGCTTTTTCCAGATT
ATCAATCGGAGCCAAGTAC
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