CK935660

Overview
NameCK935660
Unique NameCK935660
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length869
Libraries
Library NameType
Developing fruit 24 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CK935660 vs. ExPASy Swiss-Prot
Match: SODC_CHYAM (Superoxide dismutase [Cu-Zn] OS=Chymomyza amoena GN=Sod PE=3 SV=2)

HSP 1 Score: 165.622 bits (418), Expect = 3.244e-40
Identity = 79/142 (55.63%), Postives = 97/142 (68.31%), Query Frame = 1
Query:  373 NVEGVVTLTQEDG-GPTTVNVRVTGLTPGPHGLHLHEYGDTTNGCMSTGAHFNPNNMTHGAPKDEVRHAGDLGNIVANANGVAEATIVDNQISLDGPNTVVGRAFVVHELEDDLGKGGHELSLTTGNAGGRLACGVVGLTPV 795
            + +G V   QED   P  V   +TGL  G HG H+HE+GD TNGCMS+G HFNP N  HGAP DE RH GDLGNI A  +G  +  I D++I+L G N++VGR  VVH   DDLGKGGHELS +TGNAG R+ CGV+G+  +
Sbjct:   12 DAKGTVYFEQEDACAPVKVCGEITGLNKGQHGFHVHEFGDNTNGCMSSGPHFNPLNKEHGAPTDENRHLGDLGNIEAPGDGPTKVCINDSKITLFGENSIVGRTVVVHADPDDLGKGGHELSKSTGNAGARIGCGVIGICKI 153          
BLAST of CK935660 vs. ExPASy Swiss-Prot
Match: SODC_BOSMU (Superoxide dismutase [Cu-Zn] OS=Bos mutus grunniens GN=SOD1 PE=2 SV=3)

HSP 1 Score: 165.622 bits (418), Expect = 3.244e-40
Identity = 78/143 (54.55%), Postives = 96/143 (67.13%), Query Frame = 1
Query:  358 LKGTSNVEGVVTLTQEDGGPTTVNVRVTGLTPGPHGLHLHEYGDTTNGCMSTGAHFNPNNMTHGAPKDEVRHAGDLGNIVANANGVAEATIVDNQISLDGPNTVVGRAFVVHELEDDLGKGGHELSLTTGNAGGRLACGVVGL 786
            LKG   V+G +   +  G    V   +TGLT G HG H+H++GD T GC S G HFNP +  HG PKDE RH GDLGN+ A+ NGVA   IVD+ ISL G  +++GR  VVHE  DDLG+GG+E S  TGNAG RLACGV+G+
Sbjct:    9 LKGDGPVQGTIHF-EAKGDTVVVTGSITGLTEGDHGFHVHQFGDNTQGCTSAGPHFNPLSKKHGGPKDEERHVGDLGNVTADKNGVAVVDIVDSLISLSGEYSIIGRTMVVHEKPDDLGRGGNEESTKTGNAGSRLACGVIGI 150          
BLAST of CK935660 vs. ExPASy Swiss-Prot
Match: SODC_ASHGO (Superoxide dismutase [Cu-Zn] OS=Ashbya gossypii GN=SOD1 PE=3 SV=3)

HSP 1 Score: 165.622 bits (418), Expect = 3.244e-40
Identity = 79/145 (54.48%), Postives = 103/145 (71.03%), Query Frame = 1
Query:  358 LKGTSNVEGVVTLTQE-DGGPTTVNVRVTGLTPGP-HGLHLHEYGDTTNGCMSTGAHFNPNNMTHGAPKDEVRHAGDLGNIVANANGVAEATIVDNQISLDGPNTVVGRAFVVHELEDDLGKGGHELSLTTGNAGGRLACGVVGL 786
            LKG + V GVV   QE D   TT++  +TG  P   HG H+HE+GD TNGC S+G+HFNP   THG+P+DE RH GD+GN++A+ANGVA  +  D  I + GP +++GR  VVH  +DDLG+GG+E SL TGNAG R ACGV+G+
Sbjct:    8 LKGDAGVSGVVHFEQEADAAVTTISWNITGFEPNTEHGFHIHEFGDVTNGCTSSGSHFNPFKKTHGSPEDENRHVGDMGNVLADANGVAVGSAKDPLIKIFGPTSILGRTVVVHAGKDDLGRGGNEESLKTGNAGPRPACGVIGI 152          
BLAST of CK935660 vs. ExPASy Swiss-Prot
Match: SODC_CEREL (Superoxide dismutase [Cu-Zn] OS=Cervus elaphus GN=SOD1 PE=2 SV=3)

HSP 1 Score: 164.851 bits (416), Expect = 5.534e-40
Identity = 77/143 (53.85%), Postives = 97/143 (67.83%), Query Frame = 1
Query:  358 LKGTSNVEGVVTLTQEDGGPTTVNVRVTGLTPGPHGLHLHEYGDTTNGCMSTGAHFNPNNMTHGAPKDEVRHAGDLGNIVANANGVAEATIVDNQISLDGPNTVVGRAFVVHELEDDLGKGGHELSLTTGNAGGRLACGVVGL 786
            LKG   V+G +   +  G    V   +TGLT G HG H+H++GD T GC S G HFNP +  HG PKDE RH GDLGN+ A+ NGVA+  IVD+ ISL G ++++GR  VVHE  DDLG+GG+E S  TGNA  RLACGV+G+
Sbjct:    9 LKGDGPVQGTIRF-EAKGHTVVVTGSITGLTEGDHGFHVHQFGDNTQGCTSAGPHFNPLSKKHGGPKDEERHVGDLGNVTADKNGVAKVDIVDSLISLSGEHSIIGRTMVVHEKPDDLGRGGNEESTKTGNARNRLACGVIGI 150          
BLAST of CK935660 vs. ExPASy Swiss-Prot
Match: SODC_YEAST (Superoxide dismutase [Cu-Zn] OS=Saccharomyces cerevisiae GN=SOD1 PE=1 SV=2)

HSP 1 Score: 164.466 bits (415), Expect = 7.227e-40
Identity = 81/146 (55.48%), Postives = 100/146 (68.49%), Query Frame = 1
Query:  358 LKGTSNVEGVVTLTQ-EDGGPTTVNVRVTGLTPGPH-GLHLHEYGDTTNGCMSTGAHFNPNNMTHGAPKDEVRHAGDLGNIVANANGVAEATIVDNQISLDGPNTVVGRAFVVHELEDDLGKGGHELSLTTGNAGGRLACGVVGLT 789
            LKG + V GVV   Q  +  PTTV+  + G +P    G H+HE+GD TNGC+S G HFNP   THGAP DEVRH GD+GN+  + NGVA+ +  D+ I L GP +VVGR+ V+H  +DDLGKG  E SL TGNAG R ACGV+GLT
Sbjct:    8 LKGDAGVSGVVKFEQASESEPTTVSYEIAGNSPNAERGFHIHEFGDATNGCVSAGPHFNPFKKTHGAPTDEVRHVGDMGNVKTDENGVAKGSFKDSLIKLIGPTSVVGRSVVIHAGQDDLGKGDTEESLKTGNAGPRPACGVIGLT 153          
BLAST of CK935660 vs. ExPASy Swiss-Prot
Match: SODC_PONPY (Superoxide dismutase [Cu-Zn] OS=Pongo pygmaeus GN=SOD1 PE=2 SV=3)

HSP 1 Score: 164.466 bits (415), Expect = 7.227e-40
Identity = 80/145 (55.17%), Postives = 100/145 (68.97%), Query Frame = 1
Query:  358 LKG-TSNVEGVVTLTQED-GGPTTVNVRVTGLTPGPHGLHLHEYGDTTNGCMSTGAHFNPNNMTHGAPKDEVRHAGDLGNIVANANGVAEATIVDNQISLDGPNTVVGRAFVVHELEDDLGKGGHELSLTTGNAGGRLACGVVGL 786
            LKG  S V+G++   Q++  GP  V   + GLT G HG H+HE+GD T GC S G HFNP +  HG PKDE RH GDLGN+ A+ +GVA  +I D+ ISL G + ++GR  VVHE  DDLGKGG+E S  TGNAG RLACGV+G+
Sbjct:    9 LKGDNSPVKGIINFEQKERNGPVKVWGSIEGLTEGLHGFHVHEFGDNTVGCTSAGPHFNPLSRKHGGPKDEERHVGDLGNVTADKDGVASVSIEDSVISLSGDHCIIGRTLVVHEKADDLGKGGNEESTKTGNAGSRLACGVIGI 153          
BLAST of CK935660 vs. ExPASy Swiss-Prot
Match: SODC_BOVIN (Superoxide dismutase [Cu-Zn] OS=Bos taurus GN=SOD1 PE=1 SV=2)

HSP 1 Score: 164.081 bits (414), Expect = 9.439e-40
Identity = 78/143 (54.55%), Postives = 95/143 (66.43%), Query Frame = 1
Query:  358 LKGTSNVEGVVTLTQEDGGPTTVNVRVTGLTPGPHGLHLHEYGDTTNGCMSTGAHFNPNNMTHGAPKDEVRHAGDLGNIVANANGVAEATIVDNQISLDGPNTVVGRAFVVHELEDDLGKGGHELSLTTGNAGGRLACGVVGL 786
            LKG   V+G +   +  G    V   +TGLT G HG H+H++GD T GC S G HFNP +  HG PKDE RH GDLGN+ A+ NGVA   IVD  ISL G  +++GR  VVHE  DDLG+GG+E S  TGNAG RLACGV+G+
Sbjct:    9 LKGDGPVQGTIHF-EAKGDTVVVTGSITGLTEGDHGFHVHQFGDNTQGCTSAGPHFNPLSKKHGGPKDEERHVGDLGNVTADKNGVAIVDIVDPLISLSGEYSIIGRTMVVHEKPDDLGRGGNEESTKTGNAGSRLACGVIGI 150          
BLAST of CK935660 vs. ExPASy Swiss-Prot
Match: SODC_XIPGL (Superoxide dismutase [Cu-Zn] OS=Xiphias gladius GN=sod1 PE=1 SV=2)

HSP 1 Score: 163.696 bits (413), Expect = 1.233e-39
Identity = 80/144 (55.56%), Postives = 98/144 (68.06%), Query Frame = 1
Query:  358 LKGTSNVEGVVTLTQEDGGPTTVN--VRVTGLTPGPHGLHLHEYGDTTNGCMSTGAHFNPNNMTHGAPKDEVRHAGDLGNIVANANGVAEATIVDNQISLDGPNTVVGRAFVVHELEDDLGKGGHELSLTTGNAGGRLACGVVG 783
            L+G     G V   QE G    V   + + GLTPG HG H+H +GD TNGC+S G HFNP +  H  PKDE RH GDLGN+ A+ANGVA+  I D +ISL GP +++GR  V+HE  DDLG+GG+E SL TGNAG RLACGV+G
Sbjct:    9 LRGAGETTGTVYFEQE-GNANAVGKGIILKGLTPGEHGFHVHGFGDNTNGCISAGPHFNPASKKHAGPKDEDRHVGDLGNVTADANGVAKIDITD-KISLTGPYSIIGRTMVIHEKADDLGRGGNEESLKTGNAGSRLACGVIG 150          
BLAST of CK935660 vs. ExPASy Swiss-Prot
Match: SODC_DROBS (Superoxide dismutase [Cu-Zn] (Fragment) OS=Drosophila busckii GN=Sod PE=3 SV=1)

HSP 1 Score: 163.31 bits (412), Expect = 1.610e-39
Identity = 78/142 (54.93%), Postives = 94/142 (66.20%), Query Frame = 1
Query:  373 NVEGVVTLTQE-DGGPTTVNVRVTGLTPGPHGLHLHEYGDTTNGCMSTGAHFNPNNMTHGAPKDEVRHAGDLGNIVANANGVAEATIVDNQISLDGPNTVVGRAFVVHELEDDLGKGGHELSLTTGNAGGRLACGVVGLTPV 795
            + +G V   QE +  P  V   VTGL  G HG H+HE+GD TNGCMS+G HFNP    HGAP DE RH GDLGNI A  +G     I D +I+L G N+++GR  VVH   DDLGKGGHELS TTGNAG R+ CGV+G+  +
Sbjct:    4 DAKGTVFFEQESEKCPVKVTGEVTGLAKGLHGFHVHEFGDNTNGCMSSGPHFNPQGKEHGAPTDENRHLGDLGNITATGDGPTAVDICDCKITLFGANSIIGRTVVVHADPDDLGKGGHELSKTTGNAGARIGCGVIGIAKI 145          
BLAST of CK935660 vs. ExPASy Swiss-Prot
Match: SODC_CAPHI (Superoxide dismutase [Cu-Zn] OS=Capra hircus GN=SOD1 PE=2 SV=3)

HSP 1 Score: 162.925 bits (411), Expect = 2.103e-39
Identity = 78/145 (53.79%), Postives = 95/145 (65.52%), Query Frame = 1
Query:  358 LKGTSNVEGVVTLTQEDGGPTTVNVRVTGLTPGPHGLHLHEYGDTTNGCMSTGAHFNPNNMTHGAPKDEVRHAGDLGNIVANANGVAEATIVDNQISLDGPNTVVGRAFVVHELEDDLGKGGHELSLTTGNAGGRLACGVVGLTP 792
            LKG   V+G +   +  G    V   +TGLT G HG H+H++GD T GC S G HFNP +  HG PKDE RH GDLGN+ A+ NGVA   IVD  ISL G  +++GR  VVHE  DDLG+GG+E S  TGNAG  LACGV+G+ P
Sbjct:    9 LKGDGPVQGTIHF-EAKGDKVVVTGSITGLTEGDHGFHVHQFGDNTQGCTSAGPHFNPLSKKHGGPKDEERHVGDLGNVKADKNGVAIVDIVDPLISLSGEYSIIGRTMVVHEKPDDLGRGGNEESTKTGNAGSCLACGVIGIAP 152          
The following BLAST results are available for this feature:
BLAST of CK935660 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 144
Match NameE-valueIdentityDescription
SODC_CHYAM3.244e-4055.63Superoxide dismutase [Cu-Zn] OS=Chymomyza amoena G... [more]
SODC_BOSMU3.244e-4054.55Superoxide dismutase [Cu-Zn] OS=Bos mutus grunnien... [more]
SODC_ASHGO3.244e-4054.48Superoxide dismutase [Cu-Zn] OS=Ashbya gossypii GN... [more]
SODC_CEREL5.534e-4053.85Superoxide dismutase [Cu-Zn] OS=Cervus elaphus GN=... [more]
SODC_YEAST7.227e-4055.48Superoxide dismutase [Cu-Zn] OS=Saccharomyces cere... [more]
SODC_PONPY7.227e-4055.17Superoxide dismutase [Cu-Zn] OS=Pongo pygmaeus GN=... [more]
SODC_BOVIN9.439e-4054.55Superoxide dismutase [Cu-Zn] OS=Bos taurus GN=SOD1... [more]
SODC_XIPGL1.233e-3955.56Superoxide dismutase [Cu-Zn] OS=Xiphias gladius GN... [more]
SODC_DROBS1.610e-3954.93Superoxide dismutase [Cu-Zn] (Fragment) OS=Drosoph... [more]
SODC_CAPHI2.103e-3953.79Superoxide dismutase [Cu-Zn] OS=Capra hircus GN=SO... [more]

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Properties
Property NameValue
Genbank descriptionCGF1004553_A09 Developing fruit 24 DAFB Citrus sinensis cDNA clone T24DAB0004_IIF_A09 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK935660 ID=CK935660; Name=CK935660; organism=Citrus sinensis; type=EST; length=869bp
GCGGGGAGCAATCACCAGAAACACAAAATCGNNNTATCAATTAACATCAT
CCGTCCGTCCGTCCATCCGTCCATCCACTCACCCTCACGCTCAATGCAAG
CCGCAATAGCAGCCATGGCTCACGTTCTCCTCGTAGCAGCACCGCCCTCT
TCATCTCACACACTCCTTGCCACATTGCCAAATCCTAGCAGTATCACGCG
CTCTTCCTCTTCTTCTTCTTCTCATTCTCCCTCGCTTCACTCTGCATTCC
ACGGCGTCTCCCTCAAATTCCCCTCTCGTCTCAACTTATCTCTCGCCGCC
GTGGCCTCCAAGAAGCCGTTGACTGTCGTTGCTGCCGCCAAGAAAGCGGT
GGCTGTTCTTAAAGGCACTTCCAATGTTGAAGGAGTTGTTACGTTGACCC
AAGAAGATGGCGGTCCTACGACTGTCAATGTTCGTGTTACTGGTCTTACT
CCTGGGCCTCACGGGTTACACCTACACGAATATGGTGATACGACAAATGG
GTGTATGTCAACAGGAGCACATTTCAATCCTAATAACATGACACACGGTG
CTCCTAAAGATGAAGTGCGACACGCGGGTGACCTGGGAAACATAGTTGCT
AACGCCAATGGTGTGGCAGAAGCAACAATTGTGGACAACCAGATATCACT
GGATGGTCCAAACACAGTAGTTGGAAGAGCCTTTGTGGTTCATGAGCTTG
AGGATGACCTTGGAAAAGGTGGGCATGAACTTAGTCTAACCACTGGCAAT
GCAGGTGGAAGACTGGCATGCGGTGTCGTTGGCTTGACTCCGGTATGAGA
TCAGCAAAACCAGTGTGGTTGCACTATATGCTGCATGCTTTTTCCAGATT
ATCAATCGGAGCCAAGTAC
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