CK935800

Overview
NameCK935800
Unique NameCK935800
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length829
Libraries
Library NameType
Developing fruit 24 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig1857 contig Csv1_Contig1857:1..829. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
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BLAST of CK935800 vs. ExPASy Swiss-Prot
Match: RT19_ARATH (40S ribosomal protein S19, mitochondrial OS=Arabidopsis thaliana GN=RPS19 PE=1 SV=2)

HSP 1 Score: 53.5286 bits (127), Expect = 3.605e-11
Identity = 25/47 (53.19%), Postives = 33/47 (70.21%), Query Frame = 3 
Query:  330 IINDRETGRSRGFGFVTFRDEKSMRDAIEGMNGQNLDGRNITVNEAQ 470
            ++ ++ TGRSRG+GFV F  E S   AI  MNGQ L+G NI+VN A+
Sbjct:   62 VMTNKVTGRSRGYGFVNFISEDSANSAISAMNGQELNGFNISVNVAK 108

HSP 2 Score: 35.8094 bits (81), Expect = 3.605e-11
Identity = 18/52 (34.62%), Postives = 34/52 (65.38%), Query Frame = 2 
Query:   53 VPISSFLLMASADVEFRCFVGGLAWATTDSSLHEAFSAYGDILESKVRLNQV 208
            VP+SS +L +   +  + ++GGL+  T + SL +AFS++  + E++V  N+V
Sbjct:   17 VPVSS-MLGSLRYMSTKLYIGGLSPGTDEHSLKDAFSSFNGVTEARVMTNKV 67
The following BLAST results are available for this feature:
BLAST of CK935800 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 11
Match NameE-valueIdentityDescription
RT19_ARATH3.605e-1153.1940S ribosomal protein S19, mitochondrial OS=Arabid... [more]

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Properties
Property NameValue
Genbank descriptionCGF1004390_E05 Developing fruit 24 DAFB Citrus sinensis cDNA clone T24DAB0002_IVF_E05 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK935800 ID=CK935800; Name=CK935800; organism=Citrus sinensis; type=EST; length=829bp
GGGGATCCCGCAGCGGTGCTGTCTCTTAGATTTTTCTTGTAATTCCTTCT
TAGTCCCCATTTCAAGTTTTCTCCTAATGGCTTCAGCCGATGTCGAGTTT
CGGTGCTTCGTAGGCGGCCTGGCCTGGGCCACCACTGACAGCTCTCTCCA
TGAGGCCTTCAGTGCTTACGGCGATATCCTTGAATCGAAGGTCCGTTTGA
ACCAGGTCCGACCCGATCCACGATTCGGCTTGTTCTGATCTGTGATTCGT
GTGCTCTGTGATCTGTTTCTGTTACTCTGTTACTGTTCTCTGTTACTACT
GTTACTCTATTATTACTATGCCTAAATCGATTATTAACGATCGCGAGACT
GGAAGATCCAGAGGATTTGGATTCGTTACCTTCCGCGATGAGAAGTCGAT
GAGGGACGCAATCGAAGGCATGAACGGCCAGAATCTGGACGGCCGTAACA
TAACAGTCAACGAGGCCCAGTCCCGTGGAAGCGGTGGCGGTGGCGGTGGC
GGTTACGGAAGCCGTGGCGGTGGTGGATATGGAGGTGGTGGACGCCGTGA
AAGTGGTGGTGGCGGTGGATACGGTGGGAGCCGCGGATACGGAGGTGGCG
GCGGTGGATATGGTGGCCGCCGTGAAGGTGGTTACAGCCGTGACGGTGGA
TATGGCGGTGATGGTGGTTCCCGATACTCAAGGAGCGGTGCTTCTGATGG
CGGTAGCTGGAGGAACTAGGGTTTTGTAGGATAAATTAGGAGTTGAATGT
TACCGTTCCGTGTTTTGATATTTTCCTTGGGTTATGATGTGTCGTTTTGA
TCGGTTCCTGTTATCCTGTGTTGTTTCGT
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