CK935800
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CK935800 vs. ExPASy Swiss-Prot
Match: GRP1_DAUCA (Glycine-rich RNA-binding protein OS=Daucus carota PE=2 SV=1) HSP 1 Score: 94.3597 bits (233), Expect = 8.531e-19 Identity = 45/47 (95.74%), Postives = 46/47 (97.87%), Query Frame = 3 Query: 330 IINDRETGRSRGFGFVTFRDEKSMRDAIEGMNGQNLDGRNITVNEAQ 470 IINDRETGRSRGFGFVTF+DEKSMRDAIEGMNGQ LDGRNITVNEAQ Sbjct: 37 IINDRETGRSRGFGFVTFKDEKSMRDAIEGMNGQELDGRNITVNEAQ 83
BLAST of CK935800 vs. ExPASy Swiss-Prot
Match: GRP1_SINAL (Glycine-rich RNA-binding protein GRP1A OS=Sinapis alba PE=2 SV=1) HSP 1 Score: 92.0485 bits (227), Expect = 4.234e-18 Identity = 43/51 (84.31%), Postives = 48/51 (94.12%), Query Frame = 3 Query: 318 MPKSIINDRETGRSRGFGFVTFRDEKSMRDAIEGMNGQNLDGRNITVNEAQ 470 + IINDRETGRSRGFGFVTF+DEKSM+DAIEGMNGQ+LDGR+ITVNEAQ Sbjct: 35 LDSKIINDRETGRSRGFGFVTFKDEKSMKDAIEGMNGQDLDGRSITVNEAQ 85
BLAST of CK935800 vs. ExPASy Swiss-Prot
Match: GRP2_SINAL (Glycine-rich RNA-binding protein GRP2A OS=Sinapis alba PE=2 SV=1) HSP 1 Score: 91.6633 bits (226), Expect = 5.530e-18 Identity = 43/47 (91.49%), Postives = 47/47 (100.00%), Query Frame = 3 Query: 330 IINDRETGRSRGFGFVTFRDEKSMRDAIEGMNGQNLDGRNITVNEAQ 470 IINDRETGRSRGFGFVTF+DEKSM+DAIEGMNGQ+LDGR+ITVNEAQ Sbjct: 39 IINDRETGRSRGFGFVTFKDEKSMKDAIEGMNGQDLDGRSITVNEAQ 85
BLAST of CK935800 vs. ExPASy Swiss-Prot
Match: GRP7_ARATH (Glycine-rich RNA-binding protein 7 OS=Arabidopsis thaliana GN=GRP7 PE=1 SV=1) HSP 1 Score: 90.5077 bits (223), Expect = 1.232e-17 Identity = 42/47 (89.36%), Postives = 47/47 (100.00%), Query Frame = 3 Query: 330 IINDRETGRSRGFGFVTFRDEKSMRDAIEGMNGQNLDGRNITVNEAQ 470 IINDRETGRSRGFGFVTF+DEK+M+DAIEGMNGQ+LDGR+ITVNEAQ Sbjct: 39 IINDRETGRSRGFGFVTFKDEKAMKDAIEGMNGQDLDGRSITVNEAQ 85
BLAST of CK935800 vs. ExPASy Swiss-Prot
Match: GRP1_SORBI (Glycine-rich RNA-binding protein 1 (Fragment) OS=Sorghum bicolor GN=GRP1 PE=2 SV=1) HSP 1 Score: 77.7962 bits (190), Expect = 2.054e-17 Identity = 38/51 (74.51%), Postives = 42/51 (82.35%), Query Frame = 3 Query: 318 MPKSIINDRETGRSRGFGFVTFRDEKSMRDAIEGMNGQNLDGRNITVNEAQ 470 + II DRET RSRGFGFVTF E++MR AIEGMNG+ LDGRNITVNEAQ Sbjct: 14 LESKIILDRETQRSRGFGFVTFSTEEAMRSAIEGMNGKELDGRNITVNEAQ 64 HSP 2 Score: 32.7278 bits (73), Expect = 2.054e-17 Identity = 13/22 (59.09%), Postives = 19/22 (86.36%), Query Frame = 2 Query: 140 SSLHEAFSAYGDILESKVRLNQ 205 +SLH AFS YG++LESK+ L++ Sbjct: 1 NSLHSAFSTYGEVLESKIILDR 22
BLAST of CK935800 vs. ExPASy Swiss-Prot
Match: GRP10_BRANA (Glycine-rich RNA-binding protein 10 OS=Brassica napus GN=GRP10 PE=2 SV=1) HSP 1 Score: 85.1149 bits (209), Expect = 5.176e-16 Identity = 40/47 (85.11%), Postives = 44/47 (93.62%), Query Frame = 3 Query: 330 IINDRETGRSRGFGFVTFRDEKSMRDAIEGMNGQNLDGRNITVNEAQ 470 IINDRETGRSRGFGFVTF+DEKSM+DAI+ MNG+ LDGR ITVNEAQ Sbjct: 37 IINDRETGRSRGFGFVTFKDEKSMKDAIDEMNGKELDGRTITVNEAQ 83
BLAST of CK935800 vs. ExPASy Swiss-Prot
Match: GRP8_ARATH (Glycine-rich RNA-binding protein 8 OS=Arabidopsis thaliana GN=GRP8 PE=1 SV=1) HSP 1 Score: 83.5741 bits (205), Expect = 1.506e-15 Identity = 40/47 (85.11%), Postives = 44/47 (93.62%), Query Frame = 3 Query: 330 IINDRETGRSRGFGFVTFRDEKSMRDAIEGMNGQNLDGRNITVNEAQ 470 IINDRE+GRSRGFGFVTF+DEK+MRDAIE MNG+ LDGR ITVNEAQ Sbjct: 37 IINDRESGRSRGFGFVTFKDEKAMRDAIEEMNGKELDGRVITVNEAQ 83
BLAST of CK935800 vs. ExPASy Swiss-Prot
Match: GRP_HORVU (Glycine-rich RNA-binding protein blt801 OS=Hordeum vulgare GN=blt801 PE=1 SV=1) HSP 1 Score: 80.4925 bits (197), Expect = 1.275e-14 Identity = 38/47 (80.85%), Postives = 42/47 (89.36%), Query Frame = 3 Query: 330 IINDRETGRSRGFGFVTFRDEKSMRDAIEGMNGQNLDGRNITVNEAQ 470 II DRETGRSRGFGFVTF +++MR AIE MNGQ+LDGRNITVNEAQ Sbjct: 37 IITDRETGRSRGFGFVTFASDEAMRQAIEAMNGQDLDGRNITVNEAQ 83
BLAST of CK935800 vs. ExPASy Swiss-Prot
Match: GRPA_MAIZE (Glycine-rich RNA-binding, abscisic acid-inducible protein OS=Zea mays GN=RAB15 PE=1 SV=1) HSP 1 Score: 78.9518 bits (193), Expect = 3.709e-14 Identity = 37/51 (72.55%), Postives = 41/51 (80.39%), Query Frame = 3 Query: 318 MPKSIINDRETGRSRGFGFVTFRDEKSMRDAIEGMNGQNLDGRNITVNEAQ 470 + +I DRETGRSRGFGFVTF E SM DAIE MNG+ LDGRNITVN+AQ Sbjct: 35 LDSKVITDRETGRSRGFGFVTFSSENSMLDAIENMNGKELDGRNITVNQAQ 85
BLAST of CK935800 vs. ExPASy Swiss-Prot
Match: GRP2_SORBI (Glycine-rich RNA-binding protein 2 OS=Sorghum bicolor GN=GRP2 PE=2 SV=1) HSP 1 Score: 78.9518 bits (193), Expect = 3.709e-14 Identity = 37/47 (78.72%), Postives = 41/47 (87.23%), Query Frame = 3 Query: 330 IINDRETGRSRGFGFVTFRDEKSMRDAIEGMNGQNLDGRNITVNEAQ 470 +I DRETGRSRGFGFVTF E+SM DAIE MNG+ LDGRNITVN+AQ Sbjct: 39 VITDRETGRSRGFGFVTFSSEQSMLDAIENMNGKELDGRNITVNQAQ 85 The following BLAST results are available for this feature:
BLAST of CK935800 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 11
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Sequences
The
following sequences are available for this feature:
EST sequence >CK935800 ID=CK935800; Name=CK935800; organism=Citrus sinensis; type=EST; length=829bpback to top |