EY735023

Overview
NameEY735023
Unique NameEY735023
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length866
Libraries
Library NameType
Sweet orange fruit, development stadium (5 of 6)cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY735023 vs. ExPASy Swiss-Prot
Match: LOXA_PHAVU (Lipoxygenase 1 OS=Phaseolus vulgaris GN=LOXA PE=3 SV=1)

HSP 1 Score: 80.4925 bits (197), Expect = 1.365e-14
Identity = 41/102 (40.20%), Postives = 57/102 (55.88%), Query Frame = 3
Query:  438 GDGNMQYESEFEVPSGFGEIGAILVENEHHKEMYLKDIVLDGLPN-GPVNVTCNSWLHSKHDNKQKRIFFTNKLYLPSPTPDGLKRYRPEEFTFLRRNGTGE 740
            GD    +   FE    FG   A  ++N    E +L  + L+ +PN G ++  CNSW+++    K+ RIFF NK YLP+ TP  L +YR EE   LR +GTGE
Sbjct:  101 GDRQDAFNVYFEWDENFGIPEAFYIKNFMQSEFFLVSLTLEDIPNHGTIHFVCNSWVYNAKSYKRDRIFFANKTYLPNETPASLVKYRKEELENLRGDGTGE 202          
BLAST of EY735023 vs. ExPASy Swiss-Prot
Match: LOX5_ARATH (Lipoxygenase 5, chloroplastic OS=Arabidopsis thaliana GN=LOX5 PE=1 SV=2)

HSP 1 Score: 80.1073 bits (196), Expect = 1.782e-14
Identity = 38/95 (40.00%), Postives = 52/95 (54.74%), Query Frame = 3
Query:  468 FEVPSGFGEIGAILVENEHHKEMYLKDIVLDGLPNGPVNVT-----CNSWLHSKHDNKQKRIFFTNKLYLPSPTPDGLKRYRPEEFTFLRRNGTG 737
            F+     G   A +++N HH + YLK + L G P+G    T     CNSW++  H  +  R+FF+NK YLPS TP+ +K  R EE   LR N  G
Sbjct:  116 FDWDESMGPPAAFVIKNHHHSQFYLKSLTLRGFPDGEGGATAIHFICNSWIYPNHRYRSDRVFFSNKAYLPSETPELIKELREEELKNLRGNEKG 210          
BLAST of EY735023 vs. ExPASy Swiss-Prot
Match: LOX22_HORVU (Lipoxygenase 2.2, chloroplastic OS=Hordeum vulgare GN=LOX2.2 PE=1 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 2.674e-14
Identity = 48/137 (35.04%), Postives = 66/137 (48.18%), Query Frame = 3
Query:  360 VSAELDPKTGLDKSTIQD---YARKIGADGDGNMQYESEFEVPSGFGEIGAILVENEHHKEMYLKDIVLDGLPNGPVNVT------CNSWLHSKHDNKQKRIFF-TNKLYLPSPTPDGLKRYRPEEFTFLRRNGTGE 740
            VS+ELDPKTG +   I     ++R+   D D    YE+ F         GA+ + N HH EM L ++ +      P   +      C SW+   H +  KR FF   K Y+PS TP G+++ R  E   LR NG GE
Sbjct:  118 VSSELDPKTGQEHDVISGKLKHSRETEKDYD---LYEAIFTCRHRLAPSGAVRLVNYHHTEMLLGEVKIFPAGEDPTKSSAVTLFHCQSWIDPSHCSPDKRTFFPVEKSYIPSQTPKGVEKLRKSELEALRGNGCGE 251          

HSP 2 Score: 26.1794 bits (56), Expect = 2.674e-14
Identity = 9/15 (60.00%), Postives = 13/15 (86.67%), Query Frame = 1
Query:  736 GKGKTYEKIYDYDVY 780
            G+ K +++IYDYDVY
Sbjct:  250 GERKKHDRIYDYDVY 264          
BLAST of EY735023 vs. ExPASy Swiss-Prot
Match: LOX2_SOYBN (Seed lipoxygenase-2 OS=Glycine max GN=LOX1.2 PE=2 SV=1)

HSP 1 Score: 78.1814 bits (191), Expect = 6.772e-14
Identity = 41/102 (40.20%), Postives = 54/102 (52.94%), Query Frame = 3
Query:  438 GDGNMQYESEFEVPSGFGEIGAILVENEHHKEMYLKDIVLDGLPN-GPVNVTCNSWLHSKHDNKQKRIFFTNKLYLPSPTPDGLKRYRPEEFTFLRRNGTGE 740
            G G   +  +FE     G  GA  ++N    E YLK + L+ +PN G +   CNSW+++    K  RIFF N  Y+PS TP  L  YR EE   LR +G GE
Sbjct:  105 GAGESAFNIQFEWDESMGIPGAFYIKNYMQVEFYLKSLTLEDVPNQGTIRFVCNSWVYNTKLYKSVRIFFANHTYVPSETPAALVGYREEELKNLRGDGKGE 206          
BLAST of EY735023 vs. ExPASy Swiss-Prot
Match: LOX1_SOYBN (Seed lipoxygenase-1 OS=Glycine max GN=LOX1.1 PE=1 SV=2)

HSP 1 Score: 77.7962 bits (190), Expect = 8.845e-14
Identity = 41/102 (40.20%), Postives = 53/102 (51.96%), Query Frame = 3
Query:  438 GDGNMQYESEFEVPSGFGEIGAILVENEHHKEMYLKDIVLDGLPN-GPVNVTCNSWLHSKHDNKQKRIFFTNKLYLPSPTPDGLKRYRPEEFTFLRRNGTGE 740
            G G   +   FE     G  GA  ++N    E +LK + L+ + N G +   CNSW+++    K  RIFF N  Y+PS TP  L  YR EE   LR NGTGE
Sbjct:   75 GAGESAFNIHFEWDGSMGIPGAFYIKNYMQVEFFLKSLTLEAISNQGTIRFVCNSWVYNTKLYKSVRIFFANHTYVPSETPAPLVSYREEELKSLRGNGTGE 176          
BLAST of EY735023 vs. ExPASy Swiss-Prot
Match: LOXX_SOYBN (Seed lipoxygenase OS=Glycine max GN=LOX1.4 PE=1 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 1.155e-13
Identity = 39/92 (42.39%), Postives = 54/92 (58.70%), Query Frame = 3
Query:  468 FEVPSGFGEIGAILVENEHHKEMYLKDIVLDGLPN-GPVNVTCNSWLHSKHDNKQKRIFFTNKLYLPSPTPDGLKRYRPEEFTFLRRNGTGE 740
            FE  + FG  GA  ++N    E +L  + L+ +PN G +   CNSW+++    K+ RIFF N  YLPS TP  L +YR EE   LR +GTG+
Sbjct:  111 FEWDASFGIPGAFYIKNFMTDEFFLVSVKLEDIPNHGTIEFVCNSWVYNFRSYKKNRIFFVNDTYLPSATPAPLLKYRKEELEVLRGDGTGK 202          
BLAST of EY735023 vs. ExPASy Swiss-Prot
Match: LOX4_ORYSJ (Probable lipoxygenase 4 OS=Oryza sativa subsp. japonica GN=Os03g0700700 PE=2 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 2.409e-11
Identity = 37/97 (38.14%), Postives = 51/97 (52.58%), Query Frame = 3
Query:  444 GNMQYESEFEVPSGFGEIGAILVENEHHKEMYLKDIVLDGLPN-GPVNVTCNSWLHSKHDNKQKRIFFTNKLYLPSPTPDGLKRYRPEEFTFLRRNG 731
            G   +   FE     G  GA++V N +  E +LK + LDG+P  G V    NSW++   + + +R+FF N  YLPS  P  L  YR EE   LR +G
Sbjct:   97 GESVFRVAFEWDESQGIPGAVVVTNSNRSEFFLKTLTLDGVPGKGTVVFVANSWIYPADNYQYERVFFANDTYLPSKMPAPLIPYRQEELNILRGDG 193          
The following BLAST results are available for this feature:
BLAST of EY735023 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 27
Match NameE-valueIdentityDescription
LOXA_PHAVU1.365e-1440.20Lipoxygenase 1 OS=Phaseolus vulgaris GN=LOXA PE=3 ... [more]
LOX5_ARATH1.782e-1440.00Lipoxygenase 5, chloroplastic OS=Arabidopsis thali... [more]
LOX22_HORVU2.674e-1435.04Lipoxygenase 2.2, chloroplastic OS=Hordeum vulgare... [more]
LOX2_SOYBN6.772e-1440.20Seed lipoxygenase-2 OS=Glycine max GN=LOX1.2 PE=2 ... [more]
LOX1_SOYBN8.845e-1440.20Seed lipoxygenase-1 OS=Glycine max GN=LOX1.1 PE=1 ... [more]
LOXX_SOYBN1.155e-1342.39Seed lipoxygenase OS=Glycine max GN=LOX1.4 PE=1 SV... [more]
LOX4_ORYSJ2.409e-1138.14Probable lipoxygenase 4 OS=Oryza sativa subsp. jap... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionCS00-C3-704-075-D09-CT.F Sweet orange fruit, development stadium (5 of 6) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY735023 ID=EY735023; Name=EY735023; organism=Citrus sinensis; type=EST; length=866bp
AAATTCTAAAGCATCTTCCTCTTACTTGAAAAACAATGTTGAAGCCACAG
GTTCATCAACCTCAATCTATCAAACCCCTATTTCCATTATCCAAGCCGTT
TCTCCATGGAAATTACGGCCATGCCTTTCGTCCAGTTCAATCAACTTCTA
CACTTTTTAAAGGAAGTCCCAAACTTCGGATTGGTTCTGTTCCCAGAAAC
ACTATCAAAGCTATAGCAACTTCCACTGAAAAATCAATCAAAGTTAAGGC
TGTTGTTACTGTGAAACCAACTGTGGGAGGCTTCCTCTCAAATATTTCTT
TAGACCAAGGGTTAGATGATCTTGGAGATTTGTTTGGTAAATCACTCCTC
TTGGAGCTTGTCAGTGCTGAGCTTGACCCCAAGACGGGATTGGATAAATC
CACCATCCAAGATTATGCGCGCAAAATTGGTGCGGACGGGGATGGAAACA
TGCAATATGAATCAGAATTCGAAGTCCCATCTGGATTTGGAGAAATTGGC
GCAATATTAGTGGAAAATGAGCACCACAAAGAGATGTATTTGAAAGATAT
TGTTCTTGATGGTTTGCCAAATGGTCCTGTCAACGTAACATGTAATTCAT
GGCTTCACTCAAAGCACGACAATAAACAAAAGAGAATTTTCTTTACCAAC
AAGTTGTACTTGCCATCCCCAACACCAGACGGATTGAAGAGATATAGACC
TGAGGAGTTTACATTTTTGCGAAGGAATGGAACAGGGGAAGGGCAAAACC
TATGAAAAAATCTATGATTATGATGTCTACAATGGTCTTTGAAAAACCAA
AAAAAAAAAACTGAATTAACAAGGCCTGGGGTTTGGAGGGAAAAAAAAAA
CCCTTAATCCTAAAAA
back to top