EY756353

Overview
NameEY756353
Unique NameEY756353
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length906
Libraries
Library NameType
Sweet orange leaf, field plant Bcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY756353 vs. ExPASy Swiss-Prot
Match: RCA2_TOBAC (Ribulose bisphosphate carboxylase/oxygenase activase 2, chloroplastic OS=Nicotiana tabacum GN=RCA PE=2 SV=1)

HSP 1 Score: 210.305 bits (534), Expect = 1.228e-53
Identity = 100/135 (74.07%), Postives = 113/135 (83.70%), Query Frame = 2
Query:   11 EKFYWAPTREDRIGVCKGIFRNDNVADDDIVKLVDTFPGQSIDFFGALRARVYDDEVRNWXXXXXXXXXXXXLVNSKEAAPTFEQPRMTMEKLLEYGNMIVQEQENVKRVQLADKYLSEAALGEANADAIQSGNF 415
            EKFYWAPTREDRIGVCKGIFR DNV ++ ++K+VDTFPGQSIDFFGALRARVYDDEVR W            L+NS +  PTFEQP+MT+EKLLEYGNM+VQEQENVKRVQLA+ YL EAALG+ANADAI +GNF
Sbjct:  305 EKFYWAPTREDRIGVCKGIFRTDNVPEEAVIKIVDTFPGQSIDFFGALRARVYDDEVRKWVSGTGIEAIGDKLLNSFDGPPTFEQPKMTVEKLLEYGNMLVQEQENVKRVQLAETYLKEAALGDANADAINTGNF 439          
BLAST of EY756353 vs. ExPASy Swiss-Prot
Match: RCA_MAIZE (Ribulose bisphosphate carboxylase/oxygenase activase, chloroplastic OS=Zea mays GN=RCA1 PE=2 SV=3)

HSP 1 Score: 209.149 bits (531), Expect = 2.736e-53
Identity = 100/136 (73.53%), Postives = 115/136 (84.56%), Query Frame = 2
Query:   11 EKFYWAPTREDRIGVCKGIFRNDNVADDDIVKLVDTFPGQSIDFFGALRARVYDDEVRNWXXXXXXXXXXXXLVNSKEAAPTFEQPRMTMEKLLEYGNMIVQEQENVKRVQLADKYLSEAALGEANADAIQSGNFY 418
            EKFYWAPTREDRIGVCKGIFR D V ++ +V+LVDTFPGQSIDFFGALRARVYDDEVR W            LVNSKE  PTFEQP++T+EKLLEYG+M+V EQENVKRVQLADKYL+EAALGEAN DA+++G+F+
Sbjct:  297 EKFYWAPTREDRIGVCKGIFRTDGVDEEHVVQLVDTFPGQSIDFFGALRARVYDDEVRRWVSETGVENIARKLVNSKEGPPTFEQPKITIEKLLEYGHMLVAEQENVKRVQLADKYLNEAALGEANEDAMKTGSFF 432          
BLAST of EY756353 vs. ExPASy Swiss-Prot
Match: RCA_SOLPN (Ribulose bisphosphate carboxylase/oxygenase activase, chloroplastic OS=Solanum pennellii PE=2 SV=1)

HSP 1 Score: 206.838 bits (525), Expect = 1.358e-52
Identity = 98/133 (73.68%), Postives = 112/133 (84.21%), Query Frame = 2
Query:   11 EKFYWAPTREDRIGVCKGIFRNDNVADDDIVKLVDTFPGQSIDFFGALRARVYDDEVRNWXXXXXXXXXXXXLVNSKEAAPTFEQPRMTMEKLLEYGNMIVQEQENVKRVQLADKYLSEAALGEANADAIQSG 409
            EKFYWAPTREDRIGVCKGIFR DNV ++ +VK+VD+FPGQSIDFFGALRARVYDDEVR W            L+NS++  PTFEQP+MT+EKLLEYGNM+VQEQENVKRVQLA+ YL EAALG+ANADAI +G
Sbjct:  300 EKFYWAPTREDRIGVCKGIFRTDNVPEEAVVKIVDSFPGQSIDFFGALRARVYDDEVRKWVSGTGIELIGEKLLNSRDGPPTFEQPKMTLEKLLEYGNMLVQEQENVKRVQLAETYLKEAALGDANADAINTG 432          
BLAST of EY756353 vs. ExPASy Swiss-Prot
Match: RCA_PHAVU (Ribulose bisphosphate carboxylase/oxygenase activase, chloroplastic OS=Phaseolus vulgaris GN=RCA1 PE=2 SV=1)

HSP 1 Score: 201.83 bits (512), Expect = 4.368e-51
Identity = 98/136 (72.06%), Postives = 111/136 (81.62%), Query Frame = 2
Query:   11 EKFYWAPTREDRIGVCKGIFRNDNVADDDIVKLVDTFPGQSIDFFGALRARVYDDEVRNWXXXXXXXXXXXXLVNSKEAAPTFEQPRMTMEKLLEYGNMIVQEQENVKRVQLADKYLSEAALGEANADAIQSGNFY 418
            EKFYWAPTREDRIGVCKGIFR D V + DIV+LVD  PGQSIDFFGALRARVYDDEVR W            LVNSKE  PTF+QP+MT++KLL Y +M+VQEQENVKRVQLAD+YL+EAALG AN DAI+SG+F+
Sbjct:  305 EKFYWAPTREDRIGVCKGIFRTDGVPEKDIVELVDKHPGQSIDFFGALRARVYDDEVRKWISGVGVDSVGKKLVNSKEGPPTFDQPKMTLDKLLLYASMLVQEQENVKRVQLADQYLNEAALGNANEDAIKSGSFF 440          
BLAST of EY756353 vs. ExPASy Swiss-Prot
Match: RCA_CUCSA (Ribulose bisphosphate carboxylase/oxygenase activase, chloroplastic OS=Cucumis sativus PE=2 SV=1)

HSP 1 Score: 174.096 bits (440), Expect = 9.754e-43
Identity = 83/112 (74.11%), Postives = 92/112 (82.14%), Query Frame = 2
Query:   11 EKFYWAPTREDRIGVCKGIFRNDNVADDDIVKLVDTFPGQSIDFFGALRARVYDDEVRNWXXXXXXXXXXXXLVNSKEAAPTFEQPRMTMEKLLEYGNMIVQEQENVKRVQL 346
            +KFYWAPTREDRIG+C GIFR D V  +DIVKLVDTFPGQSIDFFGALRARVYDDEVR W            LVNSKE+ PTF+QP+MT+EKLLEYGNM+V EQENVKRV+L
Sbjct:  298 DKFYWAPTREDRIGICTGIFRTDGVPFEDIVKLVDTFPGQSIDFFGALRARVYDDEVRKWAVGVGVERIGRNLVNSKESPPTFDQPKMTIEKLLEYGNMLVMEQENVKRVKL 409          
BLAST of EY756353 vs. ExPASy Swiss-Prot
Match: RCA_CHLRE (Ribulose bisphosphate carboxylase/oxygenase activase, chloroplastic OS=Chlamydomonas reinhardtii PE=2 SV=1)

HSP 1 Score: 139.428 bits (350), Expect = 2.662e-32
Identity = 71/122 (58.20%), Postives = 83/122 (68.03%), Query Frame = 2
Query:   11 EKFYWAPTREDRIGVCKGIFRNDNVADDDIVKLVDTFPGQSIDFFGALRARVYDDEVRNWXXXXXXXXXXXXLVNSKEAAPTFEQPRMTMEKLLEYGNMIVQEQENVKRVQLADKYLSEAAL 376
            EK+YW PTREDRIGVC GIF+ DNV   ++  LVDTFPGQSIDFFGALRARVYDD VR W            LVN+++      +  M +  L++YG  +V EQENVKRVQLAD YLS A L
Sbjct:  274 EKYYWNPTREDRIGVCMGIFQEDNVQRREVENLVDTFPGQSIDFFGALRARVYDDMVRQWITDTGVDKIGQQLVNARQKV-AMPKVSMDLNVLIKYGKSLVDEQENVKRVQLADAYLSGAEL 394          
BLAST of EY756353 vs. ExPASy Swiss-Prot
Match: RCA_ANASC (Ribulose bisphosphate carboxylase/oxygenase activase OS=Anabaena sp. (strain CA / ATCC 33047) GN=rca PE=3 SV=1)

HSP 1 Score: 115.931 bits (289), Expect = 3.152e-25
Identity = 61/185 (32.97%), Postives = 98/185 (52.97%), Query Frame = 2
Query:   11 EKFYWAPTREDRIGVCKGIFRNDNVADDDIVKLVDTFPGQSIDFFGALRARVYDDEVRNWXXXXXXXXXXXXLVNSKEAAPTFEQPRMTMEKLLEYGNMIVQEQENVKRVQLADKYLSEAALGEANADAIQSGNFYGKAAQQMNV----PVPEGCTDP-------TAETLIQLQEVMMEAANTRF 532
            EKFYW P R++++G+  GIF  D ++  D+ KLVD+FP QSIDFF ALR+R+YD+++R++            +VNS E  P F++P  T+  L+E  N +V EQ+ ++  QL D+Y           + +  G  Y  A+    +    P P G   P       + ET  Q+++++ +     F
Sbjct:  174 EKFYWEPHRDEKVGIVGGIFAEDGLSQRDVEKLVDSFPNQSIDFFSALRSRIYDEQIRDFIHQVGYENVSLRVVNSLEGPPAFKKPDFTLSHLIESANFMVAEQKRIETSQLVDEY-----------NRLNRGRSYQPASPVAEIATSQPSPNGVNQPQSASPHISLETQEQIRQILAQGHKITF 347          
BLAST of EY756353 vs. ExPASy Swiss-Prot
Match: RCA_ANASP (Ribulose bisphosphate carboxylase/oxygenase activase OS=Anabaena sp. (strain PCC 7120) GN=rca PE=3 SV=1)

HSP 1 Score: 114.39 bits (285), Expect = 9.172e-25
Identity = 52/116 (44.83%), Postives = 77/116 (66.38%), Query Frame = 2
Query:   11 EKFYWAPTREDRIGVCKGIFRNDNVADDDIVKLVDTFPGQSIDFFGALRARVYDDEVRNWXXXXXXXXXXXXLVNSKEAAPTFEQPRMTMEKLLEYGNMIVQEQENVKRVQLADKY 358
            EKFYW P R+D++G+  GIF  D ++  +I +LVDTFP QSIDFF ALR+R+YD ++R++            +VNS EA P F++P  ++  L+E GN+++ EQ+ V   QL D+Y
Sbjct:  174 EKFYWEPNRDDKVGIVGGIFAEDGLSQREIEQLVDTFPKQSIDFFSALRSRIYDIQIRDFIHKVGFERISLRVVNSLEAPPEFKKPDFSLAHLIESGNLVLGEQQRVDNSQLVDEY 289          
The following BLAST results are available for this feature:
BLAST of EY756353 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 18
Match NameE-valueIdentityDescription
RCA2_TOBAC1.228e-5374.07Ribulose bisphosphate carboxylase/oxygenase activa... [more]
RCA_MAIZE2.736e-5373.53Ribulose bisphosphate carboxylase/oxygenase activa... [more]
RCA_SOLPN1.358e-5273.68Ribulose bisphosphate carboxylase/oxygenase activa... [more]
RCA_PHAVU4.368e-5172.06Ribulose bisphosphate carboxylase/oxygenase activa... [more]
RCA_CUCSA9.754e-4374.11Ribulose bisphosphate carboxylase/oxygenase activa... [more]
RCA_CHLRE2.662e-3258.20Ribulose bisphosphate carboxylase/oxygenase activa... [more]
RCA_ANASC3.152e-2532.97Ribulose bisphosphate carboxylase/oxygenase activa... [more]
RCA_ANASP9.172e-2544.83Ribulose bisphosphate carboxylase/oxygenase activa... [more]

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Properties
Property NameValue
Genbank descriptionCS13-C1-001-007-F06-CT.F Sweet orange leaf, field plant B Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY756353 ID=EY756353; Name=EY756353; organism=Citrus sinensis; type=EST; length=906bp
CCACGCGTCCGAGAAATTCTACTGGGCACCTACAAGGGAGGACCGTATTG
GTGTGTGCAAGGGTATCTTCAGGAATGACAATGTGGCTGATGACGACATT
GTCAAGCTTGTTGACACCTTCCCCGGCCAATCCATTGATTTCTTTGGAGC
CCTGAGGGCCAGAGTCTATGATGATGAGGTGAGGAATTGGATCTCTGGTA
TTGGTGTTGGAAGCATTGGCAAGAGCCTTGTGAACTCAAAGGAAGCAGCC
CCAACATTCGAGCAACCAAGGATGACAATGGAGAAGCTGCTCGAGTACGG
AAACATGATTGTGCAAGAGCAAGAGAATGTGAAGAGAGTTCAGTTGGCTG
ACAAGTATTTGAGTGAGGCCGCTCTTGGTGAAGCTAATGCAGATGCTATT
CAGAGTGGAAATTTCTATGGCAAAGCAGCCCAGCAAATGAATGTTCCAGT
TCCTGAAGGATGTACTGATCCTACTGCAGAAACTTTGATCCAACTGCAAG
AAGTGATGATGGAAGCTGCCAATACACGCTTTAGGCCTTGTTTCTAAGGG
GTGAGAAGTGCGCACTTTGCTTAGGATGTGAGATATTCAATAATATTGGT
GCATTTCATTTCTTGGTAATTAAAAAGATCCTTCTATTTTGTGGTATATC
ACAACTCTTTATTCGAATCTTAAAAGGGGCTCCTTCTTACCATAAAAAAA
AAAAAAAAAAAAAAAAAAAAAAAAAAGCCGCCGCTTCTAAGGATCAAGCT
TACATACCGGGGGTTGGAAGCCAAACTTCTTCTTAGGGCCCCTAATTAAT
TCCTGGGCGCGTTTTCACACGGGGAGGGGAAAACCGGGGGTCCCAATTAT
TGCCTTGGGGAATCCCCTTTCCCCCTGGGGGAAAAAAAAAGCCCCCCCAT
CCCCTT
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