EY756353

Overview
NameEY756353
Unique NameEY756353
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length906
Libraries
Library NameType
Sweet orange leaf, field plant Bcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY756353 vs. ExPASy Swiss-Prot
Match: RCA1_LARTR (Ribulose bisphosphate carboxylase/oxygenase activase 1, chloroplastic OS=Larrea tridentata GN=RCA1 PE=2 SV=1)

HSP 1 Score: 244.588 bits (623), Expect = 1.293e-67
Identity = 123/158 (77.85%), Postives = 133/158 (84.18%), Query Frame = 2
Query:   11 EKFYWAPTREDRIGVCKGIFRNDNVADDDIVKLVDTFPGQSIDFFGALRARVYDDEVRNWXXXXXXXXXXXXLVNSKEAAPTFEQPRMTMEKLLEYGNMIVQEQENVKRVQLADKYLSEAALGEANADAIQSGNFY-GKAAQQM-NVPVPEGCTDPTA 478
            EKFYWAPTREDRIGVCKGIFR DNVADDDIVKLVDTFPGQSIDFFGALRARVY DEVR W            LVNSKE  P+FEQP+MT++KLL YG M+VQEQENVKRVQLADKY+SEAALG+AN DAI+ G FY G+AAQQ+ NVPVPEGCTDP A
Sbjct:  301 EKFYWAPTREDRIGVCKGIFRTDNVADDDIVKLVDTFPGQSIDFFGALRARVYHDEVRKWVSEVGVDTIGKKLVNSKEGPPSFEQPKMTIDKLLGYGGMLVQEQENVKRVQLADKYMSEAALGDANNDAIKRGTFYGGQAAQQVGNVPVPEGCTDPQA 458          

HSP 2 Score: 33.8834 bits (76), Expect = 1.293e-67
Identity = 13/15 (86.67%), Postives = 14/15 (93.33%), Query Frame = 1
Query:  481 NFDPTARSDDGSCQY 525
            N+DPTARSDDGSC Y
Sbjct:  460 NYDPTARSDDGSCVY 474          
BLAST of EY756353 vs. ExPASy Swiss-Prot
Match: RCA_ORYSJ (Ribulose bisphosphate carboxylase/oxygenase activase, chloroplastic OS=Oryza sativa subsp. japonica GN=RCA PE=1 SV=2)

HSP 1 Score: 239.58 bits (610), Expect = 4.875e-67
Identity = 113/158 (71.52%), Postives = 135/158 (85.44%), Query Frame = 2
Query:   11 EKFYWAPTREDRIGVCKGIFRNDNVADDDIVKLVDTFPGQSIDFFGALRARVYDDEVRNWXXXXXXXXXXXXLVNSKEAAPTFEQPRMTMEKLLEYGNMIVQEQENVKRVQLADKYLSEAALGEANADAIQSGNFYGKAAQQM-NVPVPEGCTDPTAE 481
            EKFYWAPTR+DR+GVCKGIFR DNV D+DIVK+VD+FPGQSIDFFGALRARVYDDEVR W            LVNS+E  P FEQP+MT+EKL+EYG M+V+EQENVKRVQLA++YLSEAALG+AN+DA+++G+FYG+ AQQ  N+PVPEGCTDP A+
Sbjct:  292 EKFYWAPTRDDRVGVCKGIFRTDNVPDEDIVKIVDSFPGQSIDFFGALRARVYDDEVRKWVSDTGVENIGKRLVNSREGPPEFEQPKMTIEKLMEYGYMLVKEQENVKRVQLAEQYLSEAALGDANSDAMKTGSFYGQGAQQAGNLPVPEGCTDPVAK 449          

HSP 2 Score: 36.965 bits (84), Expect = 4.875e-67
Identity = 15/16 (93.75%), Postives = 15/16 (93.75%), Query Frame = 1
Query:  481 NFDPTARSDDGSCQYT 528
            NFDPTARSDDGSC YT
Sbjct:  450 NFDPTARSDDGSCLYT 465          
BLAST of EY756353 vs. ExPASy Swiss-Prot
Match: RCA_ARATH (Ribulose bisphosphate carboxylase/oxygenase activase, chloroplastic OS=Arabidopsis thaliana GN=RCA PE=1 SV=2)

HSP 1 Score: 240.35 bits (612), Expect = 2.397e-66
Identity = 116/157 (73.89%), Postives = 127/157 (80.89%), Query Frame = 2
Query:   11 EKFYWAPTREDRIGVCKGIFRNDNVADDDIVKLVDTFPGQSIDFFGALRARVYDDEVRNWXXXXXXXXXXXXLVNSKEAAPTFEQPRMTMEKLLEYGNMIVQEQENVKRVQLADKYLSEAALGEANADAIQSGNFYGKAAQQMNVPVPEGCTDPTAE 481
            EKFYWAPTREDRIGVCKGIFR D + D+DIV LVD FPGQSIDFFGALRARVYDDEVR +            LVNS+E  P FEQP MT EKL+EYGNM+V EQENVKRVQLA+ YLS+AALG+ANADAI  G FYGK AQQ+N+PVPEGCTDP AE
Sbjct:  301 EKFYWAPTREDRIGVCKGIFRTDKIKDEDIVTLVDQFPGQSIDFFGALRARVYDDEVRKFVESLGVEKIGKRLVNSREGPPVFEQPEMTYEKLMEYGNMLVMEQENVKRVQLAETYLSQAALGDANADAIGRGTFYGKGAQQVNLPVPEGCTDPVAE 457          

HSP 2 Score: 33.8834 bits (76), Expect = 2.397e-66
Identity = 13/15 (86.67%), Postives = 14/15 (93.33%), Query Frame = 1
Query:  481 NFDPTARSDDGSCQY 525
            NFDPTARSDDG+C Y
Sbjct:  458 NFDPTARSDDGTCVY 472          
BLAST of EY756353 vs. ExPASy Swiss-Prot
Match: RCAA_HORVU (Ribulose bisphosphate carboxylase/oxygenase activase A, chloroplastic OS=Hordeum vulgare GN=RCAA PE=2 SV=1)

HSP 1 Score: 236.113 bits (601), Expect = 1.179e-65
Identity = 110/157 (70.06%), Postives = 132/157 (84.08%), Query Frame = 2
Query:   11 EKFYWAPTREDRIGVCKGIFRNDNVADDDIVKLVDTFPGQSIDFFGALRARVYDDEVRNWXXXXXXXXXXXXLVNSKEAAPTFEQPRMTMEKLLEYGNMIVQEQENVKRVQLADKYLSEAALGEANADAIQSGNFYGKAAQQMNVPVPEGCTDPTAE 481
            EKFYWAPTR+DRIGVCKGIF+ DNV+D+ +VK+VDTFPGQSIDFFGALRARVYDDEVR W            LVNS++   TFEQP+MT+EKLLEYG+M+VQEQ+NVKRVQLAD Y+S+AALG+AN DA+++G+FYGK AQQ  +PVPEGCTD  A+
Sbjct:  291 EKFYWAPTRDDRIGVCKGIFQTDNVSDESVVKIVDTFPGQSIDFFGALRARVYDDEVRKWVGSTGIENIGKRLVNSRDGPVTFEQPKMTVEKLLEYGHMLVQEQDNVKRVQLADTYMSQAALGDANQDAMKTGSFYGKGAQQGTLPVPEGCTDQNAK 447          

HSP 2 Score: 35.8094 bits (81), Expect = 1.179e-65
Identity = 14/16 (87.50%), Postives = 15/16 (93.75%), Query Frame = 1
Query:  481 NFDPTARSDDGSCQYT 528
            N+DPTARSDDGSC YT
Sbjct:  448 NYDPTARSDDGSCLYT 463          
BLAST of EY756353 vs. ExPASy Swiss-Prot
Match: RCA_SPIOL (Ribulose bisphosphate carboxylase/oxygenase activase, chloroplastic OS=Spinacia oleracea PE=1 SV=2)

HSP 1 Score: 228.409 bits (581), Expect = 2.380e-63
Identity = 108/157 (68.79%), Postives = 125/157 (79.62%), Query Frame = 2
Query:   11 EKFYWAPTREDRIGVCKGIFRNDNVADDDIVKLVDTFPGQSIDFFGALRARVYDDEVRNWXXXXXXXXXXXXLVNSKEAAPTFEQPRMTMEKLLEYGNMIVQEQENVKRVQLADKYLSEAALGEANADAIQSGNFYGKAAQQMNVPVPEGCTDPTAE 481
            EKFYWAPTREDRIGVC GIF+ D V  + +VKLVD FPGQSIDFFGALRARVY DEVR W            LVNSK+  P FEQP MT++KL+EYGNM+VQEQENVKRVQLAD+Y+S AALG+AN DAI  G F+GKAAQQ+++PV +GCTDP A+
Sbjct:  299 EKFYWAPTREDRIGVCTGIFKTDKVPAEHVVKLVDAFPGQSIDFFGALRARVYHDEVRKWVNSVGVDNVGKKLVNSKDGPPVFEQPEMTLQKLMEYGNMLVQEQENVKRVQLADQYMSSAALGDANKDAIDRGTFFGKAAQQVSLPVAQGCTDPEAK 455          

HSP 2 Score: 35.8094 bits (81), Expect = 2.380e-63
Identity = 14/17 (82.35%), Postives = 15/17 (88.24%), Query Frame = 1
Query:  481 NFDPTARSDDGSCQYTL 531
            N+DPTARSDDGSC Y L
Sbjct:  456 NYDPTARSDDGSCTYNL 472          
BLAST of EY756353 vs. ExPASy Swiss-Prot
Match: RCA_MALDO (Ribulose bisphosphate carboxylase/oxygenase activase, chloroplastic OS=Malus domestica GN=RCA PE=2 SV=1)

HSP 1 Score: 224.172 bits (570), Expect = 8.219e-58
Identity = 109/137 (79.56%), Postives = 118/137 (86.13%), Query Frame = 2
Query:   11 EKFYWAPTREDRIGVCKGIFRNDNVADDDIVKLVDTFPGQSIDFFGALRARVYDDEVRNWXXXXXXXXXXXXLVNSKEAAPTFEQPRMTMEKLLEYGNMIVQEQENVKRVQLADKYLSEAALGEANADAIQSGNFYG 421
            EKFYWAPTREDRIGVC GIFR+DNVA +DIVKLVDTFPGQSIDFFGALRARVYDDEVR W            LVNSKE  PTFEQP+MT+EKLLEYGNM+VQEQENVKRVQLADKYLSEAALG+AN+DA+ +G FYG
Sbjct:  301 EKFYWAPTREDRIGVCIGIFRSDNVAKEDIVKLVDTFPGQSIDFFGALRARVYDDEVRKWITGVGVDSIGKKLVNSKEGPPTFEQPKMTIEKLLEYGNMLVQEQENVKRVQLADKYLSEAALGDANSDAMNTGTFYG 437          
BLAST of EY756353 vs. ExPASy Swiss-Prot
Match: RCAB_HORVU (Ribulose bisphosphate carboxylase/oxygenase activase B, chloroplastic OS=Hordeum vulgare GN=RCAB PE=2 SV=1)

HSP 1 Score: 218.394 bits (555), Expect = 4.510e-56
Identity = 104/138 (75.36%), Postives = 118/138 (85.51%), Query Frame = 2
Query:   11 EKFYWAPTREDRIGVCKGIFRNDNVADDDIVKLVDTFPGQSIDFFGALRARVYDDEVRNWXXXXXXXXXXXXLVNSKEAAPTFEQPRMTMEKLLEYGNMIVQEQENVKRVQLADKYLSEAALGEANADAIQSGNFYGK 424
            EKFYWAPTREDRIGVCKGIFR DNV D+ +V+LVDTFPGQSIDFFGALRARVYDDEVR W            LVNS+E  PTF+QP+MT+EKL+EYG+M+VQEQENVKRVQLADKYLSEAALG+AN DA+++G FYGK
Sbjct:  288 EKFYWAPTREDRIGVCKGIFRTDNVPDEAVVRLVDTFPGQSIDFFGALRARVYDDEVRKWVGEIGVENISKRLVNSREGPPTFDQPKMTIEKLMEYGHMLVQEQENVKRVQLADKYLSEAALGQANDDAMKTGAFYGK 425          
BLAST of EY756353 vs. ExPASy Swiss-Prot
Match: RCA2_LARTR (Ribulose bisphosphate carboxylase/oxygenase activase 2, chloroplastic OS=Larrea tridentata GN=RCA2 PE=2 SV=1)

HSP 1 Score: 213.386 bits (542), Expect = 1.451e-54
Identity = 102/135 (75.56%), Postives = 114/135 (84.44%), Query Frame = 2
Query:   11 EKFYWAPTREDRIGVCKGIFRNDNVADDDIVKLVDTFPGQSIDFFGALRARVYDDEVRNWXXXXXXXXXXXXLVNSKEAAPTFEQPRMTMEKLLEYGNMIVQEQENVKRVQLADKYLSEAALGEANADAIQSGNF 415
            EKFYWAPTREDRIGVCKGIFR DNV ++DIVK+VD FPGQSIDFFGALRARVYDDEVR W            LVNSKE  PTFEQP+MT++KLL+YGNM+V+EQENVKRVQLADKY+SEAALG+AN DAI+ G F
Sbjct:  301 EKFYWAPTREDRIGVCKGIFRTDNVPEEDIVKVVDQFPGQSIDFFGALRARVYDDEVRKWVSEVGVDTIGKKLVNSKEGPPTFEQPKMTIDKLLQYGNMLVEEQENVKRVQLADKYMSEAALGDANQDAIKRGTF 435          
BLAST of EY756353 vs. ExPASy Swiss-Prot
Match: RCA_PHAAU (Ribulose bisphosphate carboxylase/oxygenase activase, chloroplastic OS=Phaseolus aureus GN=RCA PE=2 SV=2)

HSP 1 Score: 212.616 bits (540), Expect = 2.475e-54
Identity = 100/136 (73.53%), Postives = 115/136 (84.56%), Query Frame = 2
Query:   11 EKFYWAPTREDRIGVCKGIFRNDNVADDDIVKLVDTFPGQSIDFFGALRARVYDDEVRNWXXXXXXXXXXXXLVNSKEAAPTFEQPRMTMEKLLEYGNMIVQEQENVKRVQLADKYLSEAALGEANADAIQSGNFY 418
            EKFYWAPTR+DR+GVCKGIFR D V ++DI KLVDTFPGQSIDFFGALRARVYDDEVR W            LVNSKE  PTF+QP+M+++KLL+YGNM+VQEQENVKRVQLADKYL+EAALG AN DAI+SG+F+
Sbjct:  303 EKFYWAPTRDDRVGVCKGIFRTDGVPEEDITKLVDTFPGQSIDFFGALRARVYDDEVRKWISGVGVDATGKKLVNSKEGPPTFDQPKMSLDKLLQYGNMLVQEQENVKRVQLADKYLNEAALGNANEDAIKSGSFF 438          
BLAST of EY756353 vs. ExPASy Swiss-Prot
Match: RCA1_TOBAC (Ribulose bisphosphate carboxylase/oxygenase activase 1, chloroplastic OS=Nicotiana tabacum PE=2 SV=1)

HSP 1 Score: 211.075 bits (536), Expect = 7.200e-54
Identity = 101/136 (74.26%), Postives = 113/136 (83.09%), Query Frame = 2
Query:   11 EKFYWAPTREDRIGVCKGIFRNDNVADDDIVKLVDTFPGQSIDFFGALRARVYDDEVRNWXXXXXXXXXXXXLVNSKEAAPTFEQPRMTMEKLLEYGNMIVQEQENVKRVQLADKYLSEAALGEANADAIQSGNFY 418
            EKFYWAPTREDRIGVC GIFR DNV  +D+VK+VD FPGQSIDFFGALRARVYDDEVR W            L+NS +  PTFEQP+MT+EKLLEYGNM+VQEQENVKRVQLADKYL EAALG+ANADAI +G+F+
Sbjct:  305 EKFYWAPTREDRIGVCTGIFRTDNVPAEDVVKIVDNFPGQSIDFFGALRARVYDDEVRKWVSGTGIEKIGDKLLNSFDGPPTFEQPKMTIEKLLEYGNMLVQEQENVKRVQLADKYLKEAALGDANADAINNGSFF 440          
The following BLAST results are available for this feature:
BLAST of EY756353 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 18
Match NameE-valueIdentityDescription
RCA1_LARTR1.293e-6777.85Ribulose bisphosphate carboxylase/oxygenase activa... [more]
RCA_ORYSJ4.875e-6771.52Ribulose bisphosphate carboxylase/oxygenase activa... [more]
RCA_ARATH2.397e-6673.89Ribulose bisphosphate carboxylase/oxygenase activa... [more]
RCAA_HORVU1.179e-6570.06Ribulose bisphosphate carboxylase/oxygenase activa... [more]
RCA_SPIOL2.380e-6368.79Ribulose bisphosphate carboxylase/oxygenase activa... [more]
RCA_MALDO8.219e-5879.56Ribulose bisphosphate carboxylase/oxygenase activa... [more]
RCAB_HORVU4.510e-5675.36Ribulose bisphosphate carboxylase/oxygenase activa... [more]
RCA2_LARTR1.451e-5475.56Ribulose bisphosphate carboxylase/oxygenase activa... [more]
RCA_PHAAU2.475e-5473.53Ribulose bisphosphate carboxylase/oxygenase activa... [more]
RCA1_TOBAC7.200e-5474.26Ribulose bisphosphate carboxylase/oxygenase activa... [more]

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Properties
Property NameValue
Genbank descriptionCS13-C1-001-007-F06-CT.F Sweet orange leaf, field plant B Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY756353 ID=EY756353; Name=EY756353; organism=Citrus sinensis; type=EST; length=906bp
CCACGCGTCCGAGAAATTCTACTGGGCACCTACAAGGGAGGACCGTATTG
GTGTGTGCAAGGGTATCTTCAGGAATGACAATGTGGCTGATGACGACATT
GTCAAGCTTGTTGACACCTTCCCCGGCCAATCCATTGATTTCTTTGGAGC
CCTGAGGGCCAGAGTCTATGATGATGAGGTGAGGAATTGGATCTCTGGTA
TTGGTGTTGGAAGCATTGGCAAGAGCCTTGTGAACTCAAAGGAAGCAGCC
CCAACATTCGAGCAACCAAGGATGACAATGGAGAAGCTGCTCGAGTACGG
AAACATGATTGTGCAAGAGCAAGAGAATGTGAAGAGAGTTCAGTTGGCTG
ACAAGTATTTGAGTGAGGCCGCTCTTGGTGAAGCTAATGCAGATGCTATT
CAGAGTGGAAATTTCTATGGCAAAGCAGCCCAGCAAATGAATGTTCCAGT
TCCTGAAGGATGTACTGATCCTACTGCAGAAACTTTGATCCAACTGCAAG
AAGTGATGATGGAAGCTGCCAATACACGCTTTAGGCCTTGTTTCTAAGGG
GTGAGAAGTGCGCACTTTGCTTAGGATGTGAGATATTCAATAATATTGGT
GCATTTCATTTCTTGGTAATTAAAAAGATCCTTCTATTTTGTGGTATATC
ACAACTCTTTATTCGAATCTTAAAAGGGGCTCCTTCTTACCATAAAAAAA
AAAAAAAAAAAAAAAAAAAAAAAAAAGCCGCCGCTTCTAAGGATCAAGCT
TACATACCGGGGGTTGGAAGCCAAACTTCTTCTTAGGGCCCCTAATTAAT
TCCTGGGCGCGTTTTCACACGGGGAGGGGAAAACCGGGGGTCCCAATTAT
TGCCTTGGGGAATCCCCTTTCCCCCTGGGGGAAAAAAAAAGCCCCCCCAT
CCCCTT
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