EY728893

Overview
NameEY728893
Unique NameEY728893
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length892
Libraries
Library NameType
Sweet orange fruit, development stadium (5 of 6)cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY728893 vs. ExPASy Swiss-Prot
Match: SOTB_SALCH (Probable sugar efflux transporter OS=Salmonella choleraesuis GN=sotB PE=3 SV=1)

HSP 1 Score: 85.8853 bits (211), Expect = 3.418e-16
Identity = 51/192 (26.56%), Postives = 84/192 (43.75%), Query Frame = -2
Query:    1 GWRTTFLVTALVGIPVLLAQMFLLPRLEPEKAIRISDLPAXFINPQARVGLIAVLLIGLAHFAAYTYVAPFFKNSSGFDGPTIGSLLLLYGVAGLMGNFFAGFAANRSVRHTLLLVPLMIGTSTALFPYFATGMSGPVMLIALWGFPFGPFPACASIWMFVVAPKDVERGMPLFVALFQVIIAVGSFFGGQI 576
            GWRTTF    +  +  LL  + LLP+L  E +  +  LP  F  P      +  +++  AH+ AY+Y+ PF +N +G        LLL+ G AG++G+   G   NR     + +   ++     L    A   +   +L   WG           + +  +AP   +  M LF  +F + I  G+  G Q+
Sbjct:  165 GWRTTFFAIGMGALITLLCLIKLLPKLPSEHSGSLKSLPLLFRRPALMSLYVLTVVVVTAHYTAYSYIEPFVQNVAGLSANFATVLLLILGGAGIIGSLVFGKLGNRHASSLVSIAIALLVVCLLLLLPAADSEAHLAILSIFWGIAIMVIGLGMQVKVLALAPDATDVAMALFSGIFNIGIGAGALVGNQV 356          
BLAST of EY728893 vs. ExPASy Swiss-Prot
Match: SOTB_SALA4 (Probable sugar efflux transporter OS=Salmonella agona (strain SL483) GN=sotB PE=3 SV=1)

HSP 1 Score: 85.8853 bits (211), Expect = 3.418e-16
Identity = 51/192 (26.56%), Postives = 84/192 (43.75%), Query Frame = -2
Query:    1 GWRTTFLVTALVGIPVLLAQMFLLPRLEPEKAIRISDLPAXFINPQARVGLIAVLLIGLAHFAAYTYVAPFFKNSSGFDGPTIGSLLLLYGVAGLMGNFFAGFAANRSVRHTLLLVPLMIGTSTALFPYFATGMSGPVMLIALWGFPFGPFPACASIWMFVVAPKDVERGMPLFVALFQVIIAVGSFFGGQI 576
            GWRTTF    +  +  LL  + LLP+L  E +  +  LP  F  P      +  +++  AH+ AY+Y+ PF +N +G        LLL+ G AG++G+   G   NR     + +   ++     L    A   +   +L   WG           + +  +AP   +  M LF  +F + I  G+  G Q+
Sbjct:  165 GWRTTFFAIGMGALITLLCLIKLLPKLPSEHSGSLKSLPLLFRRPALMSLYVLTVVVVTAHYTAYSYIEPFVQNVAGLSANFATVLLLILGGAGIIGSLVFGKLGNRHASSLVSIAIALLVVCLLLLLPAADSEAHLAILSIFWGIAIMVIGLGMQVKVLALAPDATDVAMALFSGIFNIGIGAGALVGNQV 356          
BLAST of EY728893 vs. ExPASy Swiss-Prot
Match: SOTB_ENT38 (Probable sugar efflux transporter OS=Enterobacter sp. (strain 638) GN=sotB PE=3 SV=1)

HSP 1 Score: 85.8853 bits (211), Expect = 3.418e-16
Identity = 59/195 (30.26%), Postives = 87/195 (44.62%), Query Frame = -2
Query:    1 GWRTTFLVTALVGIPVLLAQMFLLPRLEPEKAIRISDLPAXFINPQARVGLIAVLLIGLAHFAAYTYVAPFFKNSSGFDGPTIGSLLLLYGVAGLMGNFFAGFAANRSVRHTLLLVPLMIGTSTA---LFPYFATGMSGPVMLIALWGFPFGPFPACASIWMFVVAPKDVERGMPLFVALFQVIIAVGSFFGGQI 576
            GWRTTF    L  +  LL  + LLP+L  E +  +  LP  F  P      +  +++  AH+ AY+Y+ PF +  +GF       LLL+ G AG++G+   G   N   +H  LLV   IG   A   L    A   +   +L   WG           + +  +AP   +  M LF  +F + I  G+  G QI
Sbjct:  165 GWRTTFFAIGLGALITLLCLIKLLPKLPSEHSGSLKSLPLLFRRPALMSIYLLTVVVVTAHYTAYSYIEPFVQVVAGFSANFATVLLLILGGAGIIGSVLFGKLGN---KHASLLVSSAIGLLLACLLLLMPAAQSETHLAILSIFWGVAIMIIGLGMQVKVLALAPDATDVAMSLFSGIFNIGIGAGALVGNQI 356          
BLAST of EY728893 vs. ExPASy Swiss-Prot
Match: SOTB_SALPK (Probable sugar efflux transporter OS=Salmonella paratyphi A (strain AKU_12601) GN=sotB PE=3 SV=1)

HSP 1 Score: 85.5001 bits (210), Expect = 4.464e-16
Identity = 52/192 (27.08%), Postives = 84/192 (43.75%), Query Frame = -2
Query:    1 GWRTTFLVTALVGIPVLLAQMFLLPRLEPEKAIRISDLPAXFINPQARVGLIAVLLIGLAHFAAYTYVAPFFKNSSGFDGPTIGSLLLLYGVAGLMGNFFAGFAANRSVRHTLLLVPLMIGTSTALFPYFATGMSGPVMLIALWGFPFGPFPACASIWMFVVAPKDVERGMPLFVALFQVIIAVGSFFGGQI 576
            GWRTTF    +  +  LL  + LLP+L  E +  +  LP  F  P      +  +++  AH+ AY+Y+ PF +N +G        LLLL G AG++G+   G   NR     + +   ++     L    A   +   +L   WG           + +  +AP   +  M LF  +F + I  G+  G Q+
Sbjct:  165 GWRTTFFAIGMGALITLLCLIKLLPKLPSEHSGSLKSLPLLFRCPALMSLYVLTVVVVTAHYTAYSYIEPFVQNVAGLSANFATVLLLLLGGAGIIGSLVFGKLGNRHASSLVSIAIALLVVCLLLLLPAADSEAHLAILSIFWGIAIMVIGLGMQVKVLALAPDATDVAMALFSGIFNIGIGAGALVGNQV 356          
BLAST of EY728893 vs. ExPASy Swiss-Prot
Match: SOTB_SALPA (Probable sugar efflux transporter OS=Salmonella paratyphi A GN=sotB PE=3 SV=1)

HSP 1 Score: 85.5001 bits (210), Expect = 4.464e-16
Identity = 52/192 (27.08%), Postives = 84/192 (43.75%), Query Frame = -2
Query:    1 GWRTTFLVTALVGIPVLLAQMFLLPRLEPEKAIRISDLPAXFINPQARVGLIAVLLIGLAHFAAYTYVAPFFKNSSGFDGPTIGSLLLLYGVAGLMGNFFAGFAANRSVRHTLLLVPLMIGTSTALFPYFATGMSGPVMLIALWGFPFGPFPACASIWMFVVAPKDVERGMPLFVALFQVIIAVGSFFGGQI 576
            GWRTTF    +  +  LL  + LLP+L  E +  +  LP  F  P      +  +++  AH+ AY+Y+ PF +N +G        LLLL G AG++G+   G   NR     + +   ++     L    A   +   +L   WG           + +  +AP   +  M LF  +F + I  G+  G Q+
Sbjct:  165 GWRTTFFAIGMGALITLLCLIKLLPKLPSEHSGSLKSLPLLFRCPALMSLYVLTVVVVTAHYTAYSYIEPFVQNVAGLSANFATVLLLLLGGAGIIGSLVFGKLGNRHASSLVSIAIALLVVCLLLLLPAADSEAHLAILSIFWGIAIMVIGLGMQVKVLALAPDATDVAMALFSGIFNIGIGAGALVGNQV 356          
BLAST of EY728893 vs. ExPASy Swiss-Prot
Match: SOTB_SALNS (Probable sugar efflux transporter OS=Salmonella newport (strain SL254) GN=sotB PE=3 SV=1)

HSP 1 Score: 85.1149 bits (209), Expect = 5.830e-16
Identity = 51/192 (26.56%), Postives = 84/192 (43.75%), Query Frame = -2
Query:    1 GWRTTFLVTALVGIPVLLAQMFLLPRLEPEKAIRISDLPAXFINPQARVGLIAVLLIGLAHFAAYTYVAPFFKNSSGFDGPTIGSLLLLYGVAGLMGNFFAGFAANRSVRHTLLLVPLMIGTSTALFPYFATGMSGPVMLIALWGFPFGPFPACASIWMFVVAPKDVERGMPLFVALFQVIIAVGSFFGGQI 576
            GWRTTF    +  +  LL  + LLP+L  E +  +  LP  F  P      +  +++  AH+ AY+Y+ PF +N +G        LLL+ G AG++G+   G   NR     + +   ++     L    A   +   +L   WG           + +  +AP   +  M LF  +F + I  G+  G Q+
Sbjct:  165 GWRTTFFAIGMGALITLLCLIKLLPKLPSEHSGSLKSLPLLFRRPALISLYVLTVVVVTAHYTAYSYIEPFVQNVAGLSANFATVLLLILGGAGIIGSLVFGKLGNRHASSLVSIAIALLVVCLLLLLPAADSEAHLAILSIFWGIAIMVIGLGMQVKVLALAPDATDVAMALFSGIFNIGIGAGALVGNQV 356          
BLAST of EY728893 vs. ExPASy Swiss-Prot
Match: SOTB_PSEA7 (Probable sugar efflux transporter OS=Pseudomonas aeruginosa (strain PA7) GN=sotB PE=3 SV=1)

HSP 1 Score: 83.5741 bits (205), Expect = 1.696e-15
Identity = 57/193 (29.53%), Postives = 86/193 (44.56%), Query Frame = -2
Query:    1 MGWRTTFLVTALVGIPVLLAQMFLLPRLEPEKAIRISDLPAXFINPQARVGLIAVLLIGLAHFAAYTYVAPFFKNSSGFDGPTIGSLLLLYGVAGLMGNFFAGFAANRSVRHTLLLVPLMIGTSTALFPYFATGMSGPVMLIALWGFPFGPFPACASIWMFVVAPKDVERGMPLFVALFQVIIAVGSFFGGQI 579
            +GWRTTF+  A + +  LL  +  LP L  + +  +  LP  F  P      I  +++  A F AY+Y+ PF +  +   G     LLLL+G AG+ G+      +    R  LL   L +GTS AL   F+   +  + L  LWG     F       +  +A    +  M LF  L+ V I  G+  G  +
Sbjct:  164 LGWRTTFMAIAGLSVLTLLYLVRSLPPLPSQNSGSLRSLPMLFRRPALVCLYILTVVVISAQFTAYSYIEPFARQVAQMGGEATTLLLLLFGGAGIFGSLLFSRYSEAFPRGFLLAAILALGTSLALLLPFSAQPTWLMALSVLWGMSIMCFGLAQQSRVLRLASDATDVAMALFSGLYNVGIGAGALLGSVV 356          
BLAST of EY728893 vs. ExPASy Swiss-Prot
Match: SOTB_ECOL5 (Probable sugar efflux transporter OS=Escherichia coli O6:K15:H31 (strain 536 / UPEC) GN=sotB PE=3 SV=1)

HSP 1 Score: 83.1889 bits (204), Expect = 2.215e-15
Identity = 53/192 (27.60%), Postives = 83/192 (43.23%), Query Frame = -2
Query:    1 GWRTTFLVTALVGIPVLLAQMFLLPRLEPEKAIRISDLPAXFINPQARVGLIAVLLIGLAHFAAYTYVAPFFKNSSGFDGPTIGSLLLLYGVAGLMGNFFAGFAANRSVRHTLLLVPLMIGTSTALFPYFATGMSGPVMLIALWGFPFGPFPACASIWMFVVAPKDVERGMPLFVALFQVIIAVGSFFGGQI 576
            GWR TF    +  +  LL  + LLP L  E +  +  LP  F  P      +  +++  AH+ AY+Y+ PF +N +GF      +LLLL G AG++G+   G   N+     +     ++    AL    A       ML   WG           + +  +AP   +  M LF  +F + I  G+  G Q+
Sbjct:  165 GWRMTFFAIGIGALITLLCLIKLLPLLPSEHSGSLKSLPLLFRRPALMSIYLLTVVVVTAHYTAYSYIEPFVQNIAGFSANFATALLLLLGGAGIIGSVIFGKLGNQYASALVSTAIALLLVCLALLLPAANSEIHLGMLSIFWGIAMMIIGLGMQVKVLALAPDATDVAMALFSGIFNIGIGAGALVGNQV 356          
BLAST of EY728893 vs. ExPASy Swiss-Prot
Match: NEPI_SHISS (Purine ribonucleoside efflux pump nepI OS=Shigella sonnei (strain Ss046) GN=nepI PE=3 SV=2)

HSP 1 Score: 83.1889 bits (204), Expect = 2.215e-15
Identity = 49/197 (24.87%), Postives = 88/197 (44.67%), Query Frame = -2
Query:    7 NWMSALMGWRTTFLVTALVGIPVLLAQMFLLPRLEPEKAIRISDLPAXFINPQARVGLIAVLLIGLAHFAAYTYVAPFFKNSSGFDGPTIGSLLLLYGVAGLMGNFFAGFAANRSVRHTLLLVPLMIGTSTALFPYFATGMSGPVMLIALWGFPFGPFPACASIWMFVVAPKDVERGMPLFVALFQVIIAVGSFFGG 597
            +++  L+GWR  F   A++G+  +   +  LP L  E + +  +       P    G+IA+ +     FA +TY+ P + N +GF    +  +LL +G+A  +G   + F   RSV+  L   PL++  S  +   + +       +  +WG  F   P   S W+        E+   + VA+ Q+    G+  GG
Sbjct:  165 SFLGELIGWRNVFNAAAVMGVLCIFWIIKSLPSLPGEPSHQKQNTFRLLQRPGVMAGMIAIFMSFAGQFAFFTYIRPVYMNLAGFSVDGLTLVLLSFGIASFIGTSLSSFILKRSVKLALAGAPLILAVSALVLTLWGSDKIVATGVAIIWGLTFALVPVGWSTWITRSLADQAEKAGSIQVAVIQLANTCGAAIGG 361          
BLAST of EY728893 vs. ExPASy Swiss-Prot
Match: NEPI_SHIFL (Purine ribonucleoside efflux pump nepI OS=Shigella flexneri GN=nepI PE=3 SV=2)

HSP 1 Score: 82.8037 bits (203), Expect = 2.893e-15
Identity = 49/197 (24.87%), Postives = 88/197 (44.67%), Query Frame = -2
Query:    7 NWMSALMGWRTTFLVTALVGIPVLLAQMFLLPRLEPEKAIRISDLPAXFINPQARVGLIAVLLIGLAHFAAYTYVAPFFKNSSGFDGPTIGSLLLLYGVAGLMGNFFAGFAANRSVRHTLLLVPLMIGTSTALFPYFATGMSGPVMLIALWGFPFGPFPACASIWMFVVAPKDVERGMPLFVALFQVIIAVGSFFGG 597
            +++  L+GWR  F   A++G+  +   +  LP L  E + +  +       P    G+IA+ +     FA +TY+ P + N +GF    +  +LL +G+A  +G   + F   RSV+  L   PL++  S  +   + +       +  +WG  F   P   S W+        E+   + VA+ Q+    G+  GG
Sbjct:  165 SFLGELIGWRNVFNAAAVMGVLCIFWIIKSLPSLPGEPSHQKQNTFRLLQRPGVMAGMIAIFMSFAGQFAFFTYIRPVYMNLAGFGVDGLTLVLLSFGIASFIGTSLSSFILKRSVKLALAGAPLILAVSALVLTLWGSDKIVATGVAIIWGLTFALVPVGWSTWITRSLADQAEKAGSIQVAVIQLANTCGAAIGG 361          
The following BLAST results are available for this feature:
BLAST of EY728893 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 89
Match NameE-valueIdentityDescription
SOTB_SALCH3.418e-1626.56Probable sugar efflux transporter OS=Salmonella ch... [more]
SOTB_SALA43.418e-1626.56Probable sugar efflux transporter OS=Salmonella ag... [more]
SOTB_ENT383.418e-1630.26Probable sugar efflux transporter OS=Enterobacter ... [more]
SOTB_SALPK4.464e-1627.08Probable sugar efflux transporter OS=Salmonella pa... [more]
SOTB_SALPA4.464e-1627.08Probable sugar efflux transporter OS=Salmonella pa... [more]
SOTB_SALNS5.830e-1626.56Probable sugar efflux transporter OS=Salmonella ne... [more]
SOTB_PSEA71.696e-1529.53Probable sugar efflux transporter OS=Pseudomonas a... [more]
SOTB_ECOL52.215e-1527.60Probable sugar efflux transporter OS=Escherichia c... [more]
NEPI_SHISS2.215e-1524.87Purine ribonucleoside efflux pump nepI OS=Shigella... [more]
NEPI_SHIFL2.893e-1524.87Purine ribonucleoside efflux pump nepI OS=Shigella... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C3-704-010-A01-CT.F Sweet orange fruit, development stadium (5 of 6) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY728893 ID=EY728893; Name=EY728893; organism=Citrus sinensis; type=EST; length=892bp
AATCTGCCCGCCAAAGAACGAGCCCACGGCAATGATCACCTGGAACAACG
CGACGAACAGCGGCATGCCACGTTCCACATCCTTGGGCGCCACCACAAAC
ATCCAGATACTCGCGCAGGCCGGGAAGGGGCCGAAGGGGAAGCCCCACAG
TGCGATCAGCATCACGGGGCCGCTCATGCCGGTGGCGAAATAAGGGAACA
GGGCAGTGCTGGTGCCGATCATCAGGGGCACCAACAACAAGGTGTGGCGC
ACGCTGCGGTTGGCGGCGAAACCGGCGAAAAAGTTGCCCATTAAGCCGGC
CACGCCGTATAACAGCAGCAGCGAGCCAATGGTCGGGCCGTCGAAACCGG
AGCTGTTTTTGAAGAACGGGGCGACATATGTGTATGCGGCAAAATGCGCG
AGGCCGATCAGCAGCACGGCGATCAAGCCGACCCGGGCTTGTGGGTTGAT
GAACANGGCCGGCAGGTCGCTGATGCGGATGGCTTTTTCCGGTTCGAGGC
GCGGCAGCAGGAACATCTGCGCCAGCAGTACCGGGATGCCCACCAGCGCG
GTGACGAGGAAGGTCGTGCGCCACCCCATCAGGGCGCTCATCCAGTTGCC
GAGGGGTACGCCGAGGAGGGGTGGCAGGGTCCCGCCCACCATGAAGATCA
AGGTGCGCTTGCTGAGGCCACTCGCTTGGGGGCCAGACGGGGGCCCTAGA
AGGTCCCAGTGTACGTACTCCGGGTTGCACGGCCTGAGGTTTGTGTGGCG
TGCCCTCAGTTCGATTTGCGGGCGCTGGTGTGACGTCTGCTGGAGCGGGG
AAAGCGCGGAGGGGCGCCGCGGTGGAGCGTGCGCGCAGGCCCGGCTGCGC
GGGGAGGGGAAGTGAAGGCGGCTCCCAAGGGGGCTGGGATCG
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