EY728893

Overview
NameEY728893
Unique NameEY728893
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length892
Libraries
Library NameType
Sweet orange fruit, development stadium (5 of 6)cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY728893 vs. ExPASy Swiss-Prot
Match: YDHP_ECO57 (Inner membrane transport protein ydhP OS=Escherichia coli O157:H7 GN=ydhP PE=3 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 6.033e-13
Identity = 43/151 (28.48%), Postives = 74/151 (49.01%), Query Frame = -2
Query:  142 WMSALMGWRTTFLVTALVGIPVLLAQMFLLPRLEPEKAIRISDLPAXFINPQARVGLIAVLLIGLAHFAAYTYVAPFFKNSSGFDGPTIGSLLLLYGVAGLMGNFFAGFAANRSVRHTLLLVPLMIGTSTALFPYFATGMSGPVMLIALWG 594
            W+   +GWR +FL TA +G+  +++  F LP+        +    A  + PQ    L+  +L   A F  YTY++P  ++ +      + ++L+L GV   +GN+  G  A+RSV  TL    L++       P+ A    G  + +A+WG
Sbjct:  151 WLGETIGWRMSFLATAGLGVISMVSLFFSLPKGGAGARPEVKKELAVLMRPQVLSALLTTVLGAGAMFTLYTYISPVLQSITHATPVFVTAMLVLIGVGFSIGNYLGGKLADRSVNGTLKGFLLLLMVIMLAIPFLARNKFGAAISMAVWG 301          
BLAST of EY728893 vs. ExPASy Swiss-Prot
Match: SOTB_MANSM (Probable sugar efflux transporter OS=Mannheimia succiniciproducens (strain MBEL55E) GN=sotB PE=3 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 1.029e-12
Identity = 47/193 (24.35%), Postives = 86/193 (44.56%), Query Frame = -2
Query:    1 GWRTTFLVTALVGIPVLLAQMFLLPRLEPEKAIRISDLPAXFINPQARVGLIAVLLIGLAHFAAYTYVAPFFKNSSGFDGPTIGSLLLLYGVAGLMGNFFAGFAANRSVRHTLLLVPLMIGTSTALFPYFATGMSGPVM-LIALWGFPFGPFPACASIWMFVVAPKDVERGMPLFVALFQVIIAVGSFFGGQI 576
            GWRTTF +  +    +L+  + LLP++  + A  +  LP     P      I  +L+  AHF AY+Y+ PF             ++LL++GV+G++ +        R      LL  + I T   +  Y  +G+SG +  L+ +WG           + +  +AP   +    ++  ++ + I  G+  G Q+
Sbjct:  165 GWRTTFTLIGVFAALILILIVRLLPKIPSQNAGSLKSLPVLARRPMLITLYIFTILVISAHFTAYSYIEPFMIQIGRVSANKATAVLLIFGVSGVVASVLFS-RLYRIAPIKFLLSSVAILTLALICLYGVSGISGAIFALVFIWGVAISALSLAMQMKVLQLAPDATDVATAIYSGIYNIGIGGGALIGNQV 356          
BLAST of EY728893 vs. ExPASy Swiss-Prot
Match: YDHP_ECOLI (Inner membrane transport protein ydhP OS=Escherichia coli (strain K12) GN=ydhP PE=1 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 2.293e-12
Identity = 42/151 (27.81%), Postives = 73/151 (48.34%), Query Frame = -2
Query:  142 WMSALMGWRTTFLVTALVGIPVLLAQMFLLPRLEPEKAIRISDLPAXFINPQARVGLIAVLLIGLAHFAAYTYVAPFFKNSSGFDGPTIGSLLLLYGVAGLMGNFFAGFAANRSVRHTLLLVPLMIGTSTALFPYFATGMSGPVMLIALWG 594
            W+   +GWR +FL TA +G+  +++  F LP+        +    A  + PQ    L+  +L   A F  YTY++P  ++ +      + ++L+L GV   +GN+  G  A+RSV  TL    L++       P+ A    G  + + +WG
Sbjct:  151 WLGETIGWRMSFLATAGLGVISMVSLFFSLPKGGAGARPEVKKELAVLMRPQVLSALLTTVLGAGAMFTLYTYISPVLQSITHATPVFVTAMLVLIGVGFSIGNYLGGKLADRSVNGTLKGFLLLLMVIMLAIPFLARNEFGAAISMVVWG 301          
BLAST of EY728893 vs. ExPASy Swiss-Prot
Match: SOTB_PSEPW (Probable sugar efflux transporter OS=Pseudomonas putida (strain W619) GN=sotB PE=3 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 1.138e-11
Identity = 56/197 (28.43%), Postives = 83/197 (42.13%), Query Frame = -2
Query:   10 MGWRTTFLVTALVGIPVLLAQMFLLPRLEPEKAIRISDLPAXFINPQARVGLIAVLLIGLAHFAAYTYVAPFFKNSSGFDGPTIGSLLLLYGVAGLMGNFFAGFAANRSVRHTLLL--VPLMIGTSTALFP-----YFATGMSGPVMLIALWGFPFGPFPACASIWMFVVAPKDVERGMPLFVALFQVIIAVGSFFG 579
            +GWR TFL  A V +  +L  M  LP L  + +  +  LP  F  P   +  + V L+  A F AY+Y+ PF    +   G  I  LLLL+G AG+ G+      ++R   H LL+  + L+      L P     Y   G+S        WG     F          +A    +  M LF  ++ + I  G+  G
Sbjct:  170 LGWRVTFLSIAGVALATMLCLMKSLPLLPSQNSGSLRSLPILFKRPALVITYVLVTLVITAQFTAYSYIEPFALQVAQISGERITLLLLLFGGAGVFGSVLFSRYSDR-FPHGLLVGSIGLLAACLLLLLPLAGNFYLFAGLS------MFWGVAILSFSLSLQSKTLKLASDATDVAMALFSGIYNIGIGGGALLG 359          
BLAST of EY728893 vs. ExPASy Swiss-Prot
Match: YFHI_BACSU (Uncharacterized MFS-type transporter yfhI OS=Bacillus subtilis GN=yfhI PE=3 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 1.941e-11
Identity = 47/199 (23.62%), Postives = 87/199 (43.72%), Query Frame = -2
Query:    1 NWMSALMGWRTTFLVTALVGIPVLLAQMFLLPRLEPEKAIRISDLPAXFINPQARVGLIAVLLIGLAHFAAYTYVAPFFKNSSGFDGPTIGSLLLLYGVAGLMGNFFAGFAANRSVRHTLLLVPLMIGTSTALFPYFATGMSGPVMLIALWGFPFGPFPACASIWMFVVAPKDVERGMPLFVALFQVIIAVGSFFGGQI 597
            +++  ++ WR  F +   +G+   L  M  +P  +P+    + +    F + Q        +L     F AYT++ P  ++S+GF    I   L  YG+ G+ GNFFAG      +  T++ V + +    A+FPY A   +  ++   L+G      P      +   +         + V+ F +  A+G++ GG I
Sbjct:  155 SYLGDVLNWRAVFSIITALGVIGFLGLMAAVPNRKPKVIPMLMNEWGVFKHKQVLFSFAITILGYSGVFIAYTFIEPILRHSAGFSTVGITGALFAYGLGGVAGNFFAGKVPLPLLTRTMIGVMIGLIGVLAVFPYIAIYPAAAIVATFLFGACAFGTPPLLQTKVISSSEGGTTIAAAVSVSAFNLANALGAWIGGMI 353          
BLAST of EY728893 vs. ExPASy Swiss-Prot
Match: SOTB_PSEE4 (Probable sugar efflux transporter OS=Pseudomonas entomophila (strain L48) GN=sotB PE=3 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 4.324e-11
Identity = 52/195 (26.67%), Postives = 83/195 (42.56%), Query Frame = -2
Query:   10 MGWRTTFLVTALVGIPVLLAQMFLLPRLEPEKAIRISDLPAXFINPQARVGLIAVLLIGLAHFAAYTYVAPFFKNSSGFDGPTIGSLLLLYGVAGLMGN-FFAGFAANRSVRHTLLLVPLMIGTSTALFPYFATGMSGPVMLIA----LWGFPFGPFPACASIWMFVVAPKDVERGMPLFVALFQVIIAVGSFFG 579
            +GWR TFL  A V +  +L  M  LP L  + +  +  LP  F  P   +  + V L+  A F AY+Y+ PF  + +   G     LLLL+G AG+ G+  F+ ++        ++ +  +      L P     +SG   L A    +WG     F          +A    +  M LF  ++ + I  G+  G
Sbjct:  170 LGWRITFLCIAGVALATMLCLMKSLPLLPSQNSGSLRSLPILFKRPALVITYLLVTLVITAQFTAYSYIEPFALHVAQIGGERTTLLLLLFGGAGVFGSLLFSRYSERFPHGFLVMAIAALAACLLLLLP-----LSGNFYLFAGLSMVWGMAILSFGLALQSKTLKLASDATDVAMALFSGIYNIGIGGGALLG 359          
BLAST of EY728893 vs. ExPASy Swiss-Prot
Match: SOTB_HAEI8 (Probable sugar efflux transporter OS=Haemophilus influenzae (strain 86-028NP) GN=sotB PE=3 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 7.375e-11
Identity = 48/195 (24.62%), Postives = 86/195 (44.10%), Query Frame = -2
Query:   10 LMGWRTTFLVTALVGIPVLLAQMFLLPRLEPEKAIRISDLPAXFINPQARVGLIAVLLIGLAHFAAYTYVAPFFKNSSGFDGPTIGSLLLLYGVAGLMGNFFAGFAANRSVRHT---LLLVPLMIGTSTALFPYFAT-GMSGPVMLIALWGFPFGPFPACASIWMFVVAPKDVERGMPLFVALFQVIIAVGSFFG 582
            L+GWR TF + A++ + ++   + LLP L  + A  I+ LP     P      +   ++  AHF AYTY+ PF  +    D     ++LL++G +G+     A    NR  R      ++V + +   + L   F+T  +     L+ +WG           + +  +AP   +    ++  +F   I  G+ FG
Sbjct:  163 LVGWRVTFGIIAVLALSIMFLIIRLLPNLPSKNAGSIASLPLLAKRPLLLWLYVTTAIVISAHFTAYTYIEPFMIDVGHLDPNFATAVLLVFGFSGIA----ASLLFNRLYRFAPTKFIVVSMSLLMFSLLLLLFSTEAIIAMFSLVFIWGIGISCIGLSLQMRVLKLAPDATDVATAIYSGIFNAGIGAGALFG 353          
BLAST of EY728893 vs. ExPASy Swiss-Prot
Match: SOTB_HELAH (Probable sugar efflux transporter OS=Helicobacter acinonychis (strain Sheeba) GN=sotB PE=3 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 9.632e-11
Identity = 51/194 (26.29%), Postives = 86/194 (44.33%), Query Frame = -2
Query:   10 LMGWRTTFLVTALVGIPVLLAQMFLLPRLEPEKAIRISDLPAXFINPQARVGLIAVLLIGLA-HFAAYTYVAPFFKNSSGFDGPTIGSLLLLYGVAGLMGNF-FAGFAANRSVRHTLLLVPLMIGTSTALFPYFATGMSGPVML-IALWGFPFGPFPACASIWMFVVAPKDVERGMPLFVALFQVIIAVGSFFG 582
            ++ WR+TF +   V + V L    LLP L    A  +S LP     P   VG+  ++++ ++ HF  Y+Y+ PF    S F       +L ++G+AG+MG+F F  F      +     + L++     LF +    +   + L I LWG           + +  +AP   +    +F   + V I  G+ FG
Sbjct:  164 MLDWRSTFGMIGGVALLVALLMYRLLPSLPSRNAGTLSSLPVLMKRPLL-VGIYLLVILAISGHFTTYSYIEPFIIQISQFSPEVATLMLFVFGLAGVMGSFLFGRFYEKNPKKFIACAIILVLCPQLLLFSF--KHLEWVIFLQIFLWGIGITSLGISLQMRVLQLAPNATDVASAIFSGSYNVGIGSGALFG 354          
BLAST of EY728893 vs. ExPASy Swiss-Prot
Match: SOTB_ERWCT (Probable sugar efflux transporter OS=Erwinia carotovora subsp. atroseptica GN=sotB PE=3 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 9.632e-11
Identity = 45/194 (23.20%), Postives = 84/194 (43.30%), Query Frame = -2
Query:    1 MGWRTTFLVTALVGIPVLLAQMFLLPRLEPEKAIRISDLPAXFINPQARVGLIAVLLIGLAHFAAYTYVAPFFKNSSGFDGPTIGSLLLLYGVAGLMGN-FFAGFAANRSVRHTLLLVPLMIGTSTALFPYFATGMSGPVMLIALWGFPFGPFPACASIWMFVVAPKDVERGMPLFVALFQVIIAVGSFFGGQI 579
            +GWR TF++  L+   +++  M LLP L    +  +  LP     P         ++I  AHF AY+Y+ PF    +         LLL++G AG++G+  F+ +++       ++    +      L P   +G S   + I +WG           + +  +A    +  M L+  ++ + I  G+  G Q+
Sbjct:  162 LGWRVTFVLIGLIAAVIMVGLMKLLPVLPSSNSGSLKSLPLLLKRPALLCVYGLTVMIVTAHFTAYSYIEPFILKVALLSENFTTILLLIFGGAGIIGSMLFSRYSSKYPAGFLIVSFAFLAVCLLLLLPLSFSGWSLSTLCI-VWGIAIMALSLGMQVKVLTLASDATDVAMALYSGIYNIGIGGGALLGNQV 354          
The following BLAST results are available for this feature:
BLAST of EY728893 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 89
Match NameE-valueIdentityDescription
YDHP_ECO576.033e-1328.48Inner membrane transport protein ydhP OS=Escherich... [more]
SOTB_MANSM1.029e-1224.35Probable sugar efflux transporter OS=Mannheimia su... [more]
YDHP_ECOLI2.293e-1227.81Inner membrane transport protein ydhP OS=Escherich... [more]
SOTB_PSEPW1.138e-1128.43Probable sugar efflux transporter OS=Pseudomonas p... [more]
YFHI_BACSU1.941e-1123.62Uncharacterized MFS-type transporter yfhI OS=Bacil... [more]
SOTB_PSEE44.324e-1126.67Probable sugar efflux transporter OS=Pseudomonas e... [more]
SOTB_HAEI87.375e-1124.62Probable sugar efflux transporter OS=Haemophilus i... [more]
SOTB_HELAH9.632e-1126.29Probable sugar efflux transporter OS=Helicobacter ... [more]
SOTB_ERWCT9.632e-1123.20Probable sugar efflux transporter OS=Erwinia carot... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C3-704-010-A01-CT.F Sweet orange fruit, development stadium (5 of 6) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY728893 ID=EY728893; Name=EY728893; organism=Citrus sinensis; type=EST; length=892bp
AATCTGCCCGCCAAAGAACGAGCCCACGGCAATGATCACCTGGAACAACG
CGACGAACAGCGGCATGCCACGTTCCACATCCTTGGGCGCCACCACAAAC
ATCCAGATACTCGCGCAGGCCGGGAAGGGGCCGAAGGGGAAGCCCCACAG
TGCGATCAGCATCACGGGGCCGCTCATGCCGGTGGCGAAATAAGGGAACA
GGGCAGTGCTGGTGCCGATCATCAGGGGCACCAACAACAAGGTGTGGCGC
ACGCTGCGGTTGGCGGCGAAACCGGCGAAAAAGTTGCCCATTAAGCCGGC
CACGCCGTATAACAGCAGCAGCGAGCCAATGGTCGGGCCGTCGAAACCGG
AGCTGTTTTTGAAGAACGGGGCGACATATGTGTATGCGGCAAAATGCGCG
AGGCCGATCAGCAGCACGGCGATCAAGCCGACCCGGGCTTGTGGGTTGAT
GAACANGGCCGGCAGGTCGCTGATGCGGATGGCTTTTTCCGGTTCGAGGC
GCGGCAGCAGGAACATCTGCGCCAGCAGTACCGGGATGCCCACCAGCGCG
GTGACGAGGAAGGTCGTGCGCCACCCCATCAGGGCGCTCATCCAGTTGCC
GAGGGGTACGCCGAGGAGGGGTGGCAGGGTCCCGCCCACCATGAAGATCA
AGGTGCGCTTGCTGAGGCCACTCGCTTGGGGGCCAGACGGGGGCCCTAGA
AGGTCCCAGTGTACGTACTCCGGGTTGCACGGCCTGAGGTTTGTGTGGCG
TGCCCTCAGTTCGATTTGCGGGCGCTGGTGTGACGTCTGCTGGAGCGGGG
AAAGCGCGGAGGGGCGCCGCGGTGGAGCGTGCGCGCAGGCCCGGCTGCGC
GGGGAGGGGAAGTGAAGGCGGCTCCCAAGGGGGCTGGGATCG
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