EY753808

Overview
NameEY753808
Unique NameEY753808
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length881
Libraries
Library NameType
Sweet orange leaf, field plant Acdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig13092 contig Csv1_Contig13092:17..900. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of EY753808 vs. ExPASy Swiss-Prot
Match: RD23A_BOVIN (UV excision repair protein RAD23 homolog A OS=Bos taurus GN=RAD23A PE=2 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 2.928e-12
Identity = 34/80 (42.50%), Postives = 53/80 (66.25%), Query Frame = 1 
Query:  142 IFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLEENKVAENSFVVIMLTKNKRPTG 381
            I +KTL+  +F + ++P++TV  +K KIE  +G D +P A Q LIY GK+L DD  + + ++ E +FVV+M+TK K   G
Sbjct:    5 ITLKTLQQQTFKIRMEPDETVKVLKEKIEAEKGRDAFPVAGQKLIYAGKILSDDVPIRDYRIDEKNFVVVMVTKAKTSPG 84
[Close]
BLAST of EY753808 vs. ExPASy Swiss-Prot
Match: RD23A_MOUSE (UV excision repair protein RAD23 homolog A OS=Mus musculus GN=Rad23a PE=1 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 8.519e-12
Identity = 34/80 (42.50%), Postives = 52/80 (65.00%), Query Frame = 1 
Query:  142 IFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLEENKVAENSFVVIMLTKNKRPTG 381
            I +KTL+  +F + ++P++TV  +K KIE  +G D +P A Q LIY GK+L DD  + +  + E +FVV+M+TK K   G
Sbjct:    5 ITLKTLQQQTFKIRMEPDETVKVLKEKIEAEKGRDAFPVAGQKLIYAGKILSDDVPIRDYHIDEKNFVVVMVTKAKAGQG 84
The following BLAST results are available for this feature:
BLAST of EY753808 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 12
Match NameE-valueIdentityDescription
RD23A_BOVIN2.928e-1242.50UV excision repair protein RAD23 homolog A OS=Bos ... [more]
RD23A_MOUSE8.519e-1242.50UV excision repair protein RAD23 homolog A OS=Mus ... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionCS12-C1-001-007-B05-CT.F Sweet orange leaf, field plant A Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY753808 ID=EY753808; Name=EY753808; organism=Citrus sinensis; type=EST; length=881bp
TAACTTGTGCTTCGGTTTTCTCTCTCCGACTGTATCAATTATAGATAGAC
ATTGAAAACACCTTGCGGATCGGAAAACCAAATAAAATAGTTGAATTCGA
GAAGACCCAACGGAACGTAGAAAAAGAAGAAGATGATGAAGATTTTCGTT
AAAACTCTCAAAGGAACTTCTTTCGACGTCGAAGTGAAACCTGAAGACAC
GGTCTTTGATGTGAAAATGAAGATAGAAACTGTTCAAGGATCGGATGTTT
ATCCTGCTGCACAACAGATGCTGATTTATCAGGGGAAAGTCCTCAAAGAT
GATACTACACTGGAAGAGAACAAAGTAGCTGAAAATAGTTTTGTTGTTAT
TATGTTAACAAAGAATAAGAGACCAACTGGTGAAGGTTCAACTAGGTCAA
CTGCGCCTACAAAGGCTCCCCAGTCAAGTGCCCCAACCCCTGCAGCAACC
CCAGCAACAGCTCCTCAGACTGCCGTGCCAATCTCTACAGAGCCTACACC
TGCTCCTGCACCTGCTCCTACTCCTGCTCCTGCTTCTGCTTCTGTGTCAT
CAGTTTCTGCTACGTCAGAGTCTGGTGTGTATGGGCATGCTGCATCTAAT
CTGGTTGCTGGGAACAACTTGGAGGGAGCAATCCAGCAGATTCTTGATAT
GGGTGGAGGGACTTGGGATAGAGATACTGGTGNTCGTGCTCTTCGAGCTG
CTTATATAATCCTGAGAGGGCTGNTGAATATTATATTCTGGGAGTATTGC
TATATTTCATCATTCTTCACACATTTGTAACTCATTTAGGATGGAGCTTT
TGAATGAAATCTTTTGATGCGNTATGNCATCAGATGGTCTCTCATAATTG
CTCTAAGGGGGGAGGGTGTCAAAAAAAAAAA
back to top