EY753754

Overview
NameEY753754
Unique NameEY753754
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length863
Libraries
Library NameType
Sweet orange leaf, field plant Acdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY753754 vs. ExPASy Swiss-Prot
Match: DHX15_HUMAN (Putative pre-mRNA-splicing factor ATP-dependent RNA helicase DHX15 OS=Homo sapiens GN=DHX15 PE=1 SV=2)

HSP 1 Score: 173.326 bits (438), Expect = 1.538e-42
Identity = 92/218 (42.20%), Postives = 135/218 (61.93%), Query Frame = 3
Query:   72 LPILQYEEKIXXXXXXXXXXXXIGETGSGKSTQLSQILHRHGYTKSGI---IGVTQPXXXXXXXXXXXXXQELGVRLGEEVGYAIRFEDRTSERTLIKYLTDGVLLREILSNPDLSPYSVIILDEAHERSLNTDILLGLVKRLVNLRASKLKILITSATLDGEKVSKFFSNCPTLNVPGKLYPVEILHSKERXYSYLESALKQ--HLYTCSRTRGDVL 710
            LP+ +Y+++             +GETGSGK+TQ+ Q    +  +  G    +  TQP              E+ V LG+EVGY+IRFED +S +T++KY+TDG+LLRE +++P L  Y VIILDEAHER+L TDIL+G++K +V  R S LK+++ SATLD  K   +F NCP L +PG+ +PVEI ++ E    YLE+A++    ++ C    GD+L
Sbjct:  137 LPVWEYKDRFTDILVRHQSFVLVGETGSGKTTQIPQWCVEYMRSLPGPKRGVACTQPRRVAAMSVAQRVADEMDVMLGQEVGYSIRFEDCSSAKTILKYMTDGMLLREAMNDPLLERYGVIILDEAHERTLATDILMGVLKEVVRQR-SDLKVIVMSATLDAGKFQIYFDNCPLLTIPGRTHPVEIFYTPEPERDYLEAAIRTVIQIHMCEEEEGDLL 353          
BLAST of EY753754 vs. ExPASy Swiss-Prot
Match: PRP43_YEAST (Pre-mRNA-splicing factor ATP-dependent RNA helicase PRP43 OS=Saccharomyces cerevisiae GN=PRP43 PE=1 SV=1)

HSP 1 Score: 172.555 bits (436), Expect = 2.623e-42
Identity = 92/194 (47.42%), Postives = 132/194 (68.04%), Query Frame = 3
Query:  138 IGETGSGKSTQLSQ--ILHRHGYTKSGIIGVTQPXXXXXXXXXXXXXQELGVRLGEEVGYAIRFEDRTSERTLIKYLTDGVLLREILSNPDLSPYSVIILDEAHERSLNTDILLGLVKRLVNLRASKLKILITSATLDGEKVSKFFSNCPTLNVPGKLYPVEILHSKERXYSYLESALKQHLYT-CSRTRGDVL 710
            +GETGSGK+TQ+ Q  +     + ++  +  TQP             +E+ V+LGEEVGY+IRFE++TS +T++KY+TDG+LLRE + + DLS YS IILDEAHER+L TDIL+GL+K++V  R   LKI+I SATLD EK  ++F++ P L VPG+ YPVE+ ++ E    YL+SA++  L    +   GD+L
Sbjct:  115 VGETGSGKTTQIPQFVLFDEMPHLENTQVACTQPRRVAAMSVAQRVAEEMDVKLGEEVGYSIRFENKTSNKTILKYMTDGMLLREAMEDHDLSRYSCIILDEAHERTLATDILMGLLKQVVK-RRPDLKIIIMSATLDAEKFQRYFNDAPLLAVPGRTYPVELYYTPEFQRDYLDSAIRTVLQIHATEEAGDIL 307          
BLAST of EY753754 vs. ExPASy Swiss-Prot
Match: DHX15_CAEEL (Putative pre-mRNA-splicing factor ATP-dependent RNA helicase F56D2.6 OS=Caenorhabditis elegans GN=F56D2.6 PE=2 SV=1)

HSP 1 Score: 172.555 bits (436), Expect = 2.623e-42
Identity = 94/225 (41.78%), Postives = 137/225 (60.89%), Query Frame = 3
Query:   66 ANLPILQYEEKIXXXXXXXXXXXXIGETGSGKSTQLSQIL------HRHGYT--KSGIIGVTQPXXXXXXXXXXXXXQELGVRLGEEVGYAIRFEDRTSERTLIKYLTDGVLLREILSNPDLSPYSVIILDEAHERSLNTDILLGLVKRLVNLRASKLKILITSATLDGEKVSKFFSNCPTLNVPGKLYPVEILHSKERXYSYLESALKQ--HLYTCSRTRGDVL 710
            + LP+ +Y+EK             +GETGSGK+TQ+ Q         + G    ++ ++  TQP             +E+ V LG+EVGY+IRFED  SERT++KY TDG+LLRE +++P L  Y V+ILDEAHER+L TDIL+GL+K +V  RA  +K++I SATLD  K  ++F +CP L+VPG+ +PVEI  +      YLE+A++    ++      GD+L
Sbjct:   74 SQLPVWEYKEKFMELLRNNQCITLVGETGSGKTTQIPQWAVEFMKQQQQGQPPGQARLVACTQPRRVAAMSVATRVAEEMDVVLGQEVGYSIRFEDCISERTVLKYCTDGMLLREAMNSPLLDKYKVLILDEAHERTLATDILMGLIKEIVRNRAD-IKVVIMSATLDAGKFQRYFEDCPLLSVPGRTFPVEIFFTPNAEKDYLEAAIRTVIQIHMVEEVEGDIL 297          
BLAST of EY753754 vs. ExPASy Swiss-Prot
Match: PRH1_SCHPO (Probable ATP-dependent RNA helicase prh1 OS=Schizosaccharomyces pombe GN=prh1 PE=2 SV=2)

HSP 1 Score: 169.474 bits (428), Expect = 2.221e-41
Identity = 87/200 (43.50%), Postives = 127/200 (63.50%), Query Frame = 3
Query:   69 NLPILQYEEKIXXXXXXXXXXXXIGETGSGKSTQLSQILHRHGYTKSGIIGVTQPXXXXXXXXXXXXXQELGVRLGEEVGYAIRFEDRTSERTLIKYLTDGVLLREILSNPDLSPYSVIILDEAHERSLNTDILLGLVKRLVNLRASKLKILITSATLDGEKVSKFFSNCPTLNVPGKLYPVEILHSKERXYSYLESALK 668
            NLPI +  + +            +GETGSGKSTQ+ Q L+   Y + G + +TQP              E G RLGE+VGY+IRF+D TS++T IKYLTDG+LLRE++++P LS Y  +ILDEAHER+L TD+LLG VK+++  R + L+++I SATL+ E+ S+FF       + G+ YPV+I ++      YL++ L+
Sbjct:   95 NLPIWEAHDTLCQQIQDNRVIVVVGETGSGKSTQIPQFLNECPYAQEGCVAITQPRRVAAVNLAKRVAAEQGCRLGEQVGYSIRFDDTTSKKTRIKYLTDGMLLRELINDPILSQYHTLILDEAHERTLMTDMLLGFVKKIIKKRPA-LRVIIMSATLNAERFSEFFDGAEICYISGRQYPVQIHYTYTPEPDYLDACLR 293          
BLAST of EY753754 vs. ExPASy Swiss-Prot
Match: DHX15_ARATH (Probable pre-mRNA-splicing factor ATP-dependent RNA helicase OS=Arabidopsis thaliana GN=At2g47250 PE=2 SV=1)

HSP 1 Score: 167.933 bits (424), Expect = 6.461e-41
Identity = 90/199 (45.23%), Postives = 129/199 (64.82%), Query Frame = 3
Query:  138 IGETGSGKSTQLSQ------ILHRHGYTKSGIIGVTQPXXXXXXXXXXXXXQELGVRLGEEVGYAIRFEDRTSERTLIKYLTDGVLLREILSNPDLSPYSVIILDEAHERSLNTDILLGLVKRLVNLRASKLKILITSATLDGEKVSKFFSNCPTLNVPGKLYPVEILHSKERXYSYLESALKQ--HLYTCSRTRGDVL 710
            +GETGSGK+TQ+ Q      +       +  ++G TQP              E+ V +GEEVGY+IRFED TS RT++KYLTDG+LLRE +++P L  Y VIILDEAHER+L TD+L GL+K ++  R   LK+++ SATL+ EK  ++FS  P + VPG+L+PVEI +++E    YLE+A++    ++ C    GD+L
Sbjct:   87 VGETGSGKTTQIPQFVLDAVVADNSDKGRKWLVGCTQPRRVAAMSVSRRVADEMDVSIGEEVGYSIRFEDCTSSRTMLKYLTDGMLLREAMADPLLERYKVIILDEAHERTLATDVLFGLLKEVLRNRPD-LKLVVMSATLEAEKFQEYFSGAPLMKVPGRLHPVEIFYTQEPERDYLEAAIRTVVQIHMC-EPPGDIL 283          
BLAST of EY753754 vs. ExPASy Swiss-Prot
Match: PRP16_YEAST (Pre-mRNA-splicing factor ATP-dependent RNA helicase PRP16 OS=Saccharomyces cerevisiae GN=PRP16 PE=1 SV=2)

HSP 1 Score: 166.392 bits (420), Expect = 1.880e-40
Identity = 101/236 (42.80%), Postives = 138/236 (58.47%), Query Frame = 3
Query:   27 LLESSKPRVN*SMANLPILQYEEKIXXXXXXXXXXXXIGETGSGKSTQLSQILHRHGYT--KSGIIGVTQPXXXXXXXXXXXXXQELGVRLGEEVGYAIRFEDRT-SERTLIKYLTDGVLLREILSNPDLSPYSVIILDEAHERSLNTDILLGLVKRLVNLRASKLKILITSATLDGEKVSKFFSNCPTLNVPGKLYPVEILHSKERXYSYLESALKQ----HLYT-CSRTRGDVL 710
            L   SK  +  +   LP+ +   ++            IGETGSGK+TQL+Q L+  GY   +   I VTQP              E+ V LG+EVGY+IRFED T SE T +K++TDG+LLRE L +  L  YS +I+DEAHERSLNTDILLG  K L+  R   LK++ITSAT++ +K S FF N P   +PG+ +PV+ +++      Y+E+A+ Q    HL   CS   GD+L
Sbjct:  335 LFTPSKDDIKHTKEQLPVFRCRSQLLSLIRENQVVVIIGETGSGKTTQLAQYLYEEGYANDRGKSIVVTQPRRVAAISVAKRVAMEMQVPLGKEVGYSIRFEDVTDSECTKLKFVTDGILLRETLLDDTLDKYSCVIIDEAHERSLNTDILLGFFKILL-ARRRDLKLIITSATMNAKKFSAFFGNAPQFTIPGRTFPVQTIYTSNPVQDYVEAAVSQAVKIHLANDCS--SGDIL 567          
BLAST of EY753754 vs. ExPASy Swiss-Prot
Match: DHX15_SCHPO (Probable pre-mRNA-splicing factor ATP-dependent RNA helicase prp43 OS=Schizosaccharomyces pombe GN=prp43 PE=2 SV=1)

HSP 1 Score: 166.007 bits (419), Expect = 2.455e-40
Identity = 94/201 (46.77%), Postives = 124/201 (61.69%), Query Frame = 3
Query:   72 LPILQYEEKIXXXXXXXXXXXXIGETGSGKSTQLSQIL--HRHGYTKSGIIGVTQPXXXXXXXXXXXXXQELGVRLGEEVGYAIRFEDRTSERTLIKYLTDGVLLREILSNPDLSPYSVIILDEAHERSLNTDILLGLVKRLVNLRASKLKILITSATLDGEKVSKFFSNCPTLNVPGKLYPVEILHSKERXYSYLESALK 668
            LP+ Q  E+             +GETGSGK+TQ+ Q +      +  +  I  TQP              E+ V LGEEVGY IRFED +   TL+KY+TDG+LLRE +++  LS YS IILDEAHER+L TDIL+GL+KRL   R   LKI++ SATLD +K  K+F + P L VPG+ YPVEI +++E    YLE+AL+
Sbjct:   75 LPVYQQREEFLKIYHENQIIVFVGETGSGKTTQIPQFVLYDELPHLTNTQIACTQPRRVAAMSVAKRVADEMDVDLGEEVGYNIRFEDCSGPNTLLKYMTDGMLLREAMTDHMLSRYSCIILDEAHERTLATDILMGLMKRLAT-RRPDLKIIVMSATLDAKKFQKYFFDAPLLAVPGRTYPVEIYYTQEPERDYLEAALR 274          
BLAST of EY753754 vs. ExPASy Swiss-Prot
Match: DHX40_MOUSE (Probable ATP-dependent RNA helicase DHX40 OS=Mus musculus GN=Dhx40 PE=2 SV=1)

HSP 1 Score: 164.081 bits (414), Expect = 9.330e-40
Identity = 84/184 (45.65%), Postives = 118/184 (64.13%), Query Frame = 3
Query:   75 PILQYEEKIXXXXXXXXXXXXIGETGSGKSTQLSQILHRHGYTKSGIIGVTQPXXXXXXXXXXXXXQELGVRLGEEVGYAIRFEDRTSERTLIKYLTDGVLLREILSNPDLSPYSVIILDEAHERSLNTDILLGLVKRLVN----LRASKLKILITSATLDGEKVSKFFSNCPTLNVPGKLYPV 614
            PI +  +K+             G TGSGK+TQL + L+  G+++ G+IGVTQP             +E+   LG +VGY +RF+D +S+ T IKY+TDG LL+ IL +P+LS +SVIILDEAHER+L TDIL GL+K+L       R   LK+++ SAT++  K+S FF NCP  ++PG+LYPV
Sbjct:   54 PIQKQRKKLIQAVRDNSFLIVTGNTGSGKTTQLPKYLYEAGFSQHGMIGVTQPRKVAAISVAQRVAEEMKCTLGSKVGYQVRFDDCSSKETAIKYMTDGCLLKHILGDPNLSKFSVIILDEAHERTLTTDILFGLLKKLFQDKSPNRKEHLKVVVMSATMELAKLSAFFGNCPIFDIPGRLYPV 237          
BLAST of EY753754 vs. ExPASy Swiss-Prot
Match: DHX40_PONAB (Probable ATP-dependent RNA helicase DHX40 OS=Pongo abelii GN=DHX40 PE=2 SV=1)

HSP 1 Score: 163.696 bits (413), Expect = 1.219e-39
Identity = 84/184 (45.65%), Postives = 118/184 (64.13%), Query Frame = 3
Query:   75 PILQYEEKIXXXXXXXXXXXXIGETGSGKSTQLSQILHRHGYTKSGIIGVTQPXXXXXXXXXXXXXQELGVRLGEEVGYAIRFEDRTSERTLIKYLTDGVLLREILSNPDLSPYSVIILDEAHERSLNTDILLGLVKRLVN----LRASKLKILITSATLDGEKVSKFFSNCPTLNVPGKLYPV 614
            PI +  +KI             G TGSGK+TQL + L+  G+++ G+IGVTQP             +E+   LG +VGY +RF+D +S+ T IKY+TDG LL+ IL +P+L+ +SVIILDEAHER+L TDIL GL+K+L       R   LK+++ SAT++  K+S FF NCP  ++PG+LYPV
Sbjct:   54 PIQKQRKKIIQAVRDNSFLIVTGNTGSGKTTQLPKYLYEAGFSQHGMIGVTQPRKVAAISVAQRVAEEMKCTLGSKVGYQVRFDDCSSKETAIKYMTDGCLLKHILGDPNLTKFSVIILDEAHERTLTTDILFGLLKKLFQEKSPNRKEHLKVVVMSATMELAKLSAFFGNCPIFDIPGRLYPV 237          
BLAST of EY753754 vs. ExPASy Swiss-Prot
Match: DHX40_HUMAN (Probable ATP-dependent RNA helicase DHX40 OS=Homo sapiens GN=DHX40 PE=1 SV=2)

HSP 1 Score: 163.696 bits (413), Expect = 1.219e-39
Identity = 84/184 (45.65%), Postives = 118/184 (64.13%), Query Frame = 3
Query:   75 PILQYEEKIXXXXXXXXXXXXIGETGSGKSTQLSQILHRHGYTKSGIIGVTQPXXXXXXXXXXXXXQELGVRLGEEVGYAIRFEDRTSERTLIKYLTDGVLLREILSNPDLSPYSVIILDEAHERSLNTDILLGLVKRLVN----LRASKLKILITSATLDGEKVSKFFSNCPTLNVPGKLYPV 614
            PI +  +KI             G TGSGK+TQL + L+  G+++ G+IGVTQP             +E+   LG +VGY +RF+D +S+ T IKY+TDG LL+ IL +P+L+ +SVIILDEAHER+L TDIL GL+K+L       R   LK+++ SAT++  K+S FF NCP  ++PG+LYPV
Sbjct:   54 PIQKQRKKIIQAVRDNSFLIVTGNTGSGKTTQLPKYLYEAGFSQHGMIGVTQPRKVAAISVAQRVAEEMKCTLGSKVGYQVRFDDCSSKETAIKYMTDGCLLKHILGDPNLTKFSVIILDEAHERTLTTDILFGLLKKLFQEKSPNRKEHLKVVVMSATMELAKLSAFFGNCPIFDIPGRLYPV 237          
The following BLAST results are available for this feature:
BLAST of EY753754 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 87
Match NameE-valueIdentityDescription
DHX15_HUMAN1.538e-4242.20Putative pre-mRNA-splicing factor ATP-dependent RN... [more]
PRP43_YEAST2.623e-4247.42Pre-mRNA-splicing factor ATP-dependent RNA helicas... [more]
DHX15_CAEEL2.623e-4241.78Putative pre-mRNA-splicing factor ATP-dependent RN... [more]
PRH1_SCHPO2.221e-4143.50Probable ATP-dependent RNA helicase prh1 OS=Schizo... [more]
DHX15_ARATH6.461e-4145.23Probable pre-mRNA-splicing factor ATP-dependent RN... [more]
PRP16_YEAST1.880e-4042.80Pre-mRNA-splicing factor ATP-dependent RNA helicas... [more]
DHX15_SCHPO2.455e-4046.77Probable pre-mRNA-splicing factor ATP-dependent RN... [more]
DHX40_MOUSE9.330e-4045.65Probable ATP-dependent RNA helicase DHX40 OS=Mus m... [more]
DHX40_PONAB1.219e-3945.65Probable ATP-dependent RNA helicase DHX40 OS=Pongo... [more]
DHX40_HUMAN1.219e-3945.65Probable ATP-dependent RNA helicase DHX40 OS=Homo ... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionCS12-C1-001-006-E07-CT.F Sweet orange leaf, field plant A Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY753754 ID=EY753754; Name=EY753754; organism=Citrus sinensis; type=EST; length=863bp
CACGATAAAATCCTAAAACCCTAATCTTGCTCGAAAGCTCCAAACCTCGA
GTTAATTGATCGATGGCGAATCTTCCGATTCTCCAATATGAAGAAAAGAT
AGTAGAAACGGTGGAGCAGAATCCAGTGGTGGTGGTTATCGGAGAGACGG
GGTCCGGCAAGAGCACGCAGCTCTCTCAGATACTCCACCGACATGGCTAC
ACCAAATCCGGAATTATTGGCGTTACTCAGCCTCGCCGAGTCGCTGCCGT
ATCCGTTGCCAGACGAGTTGCACAGGAACTTGGTGTTCGGCTTGGGGAGG
AAGTAGGTTATGCAATACGATTTGAGGATAGAACATCGGAAAGAACACTT
ATTAAATACCTTACTGATGGAGTTCTTCTTCGAGAAATTCTGTCTAATCC
AGATCTTAGTCCGTATTCAGTTATCATATTAGATGAAGCCCATGAGAGGA
GTCTCAACACGGACATATTGCTGGGTCTTGTGAAACGCTTGGTTAATTTG
CGAGCATCAAAATTAAAGATTTTGATCACGTCAGCAACTCTTGATGGTGA
AAAAGTTTCCAAGTTCTTTTCAAATTGCCCCACATTGAATGTCCCTGGAA
AGTTGTATCCTGTGGAGATATTGCACAGCAAGGAGCGTNCCTACAGCTAT
CTTGAGTCTGCTTTGAAACAGCATTTGTATACATGTTCGAGAACCAGAGG
TGACGTGTTGANTTCATGACTGGACAGATGAATTANAAAGCTAGTTTAAA
GGTAGAAGATAATTCAAAGCTGNATGAAGGTCCTGCATGATGCTGAATCC
TCCCCTCATGGNTCTTGCACCGAAAGCAGGTCGTGTATTTATCCTCCCCT
CCAATGTAGGCAT
back to top