EY753754

Overview
NameEY753754
Unique NameEY753754
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length863
Libraries
Library NameType
Sweet orange leaf, field plant Acdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY753754 vs. ExPASy Swiss-Prot
Match: DHX40_RAT (Probable ATP-dependent RNA helicase DHX40 OS=Rattus norvegicus GN=Dhx40 PE=2 SV=1)

HSP 1 Score: 162.925 bits (411), Expect = 2.079e-39
Identity = 83/184 (45.11%), Postives = 118/184 (64.13%), Query Frame = 3
Query:   75 PILQYEEKIXXXXXXXXXXXXIGETGSGKSTQLSQILHRHGYTKSGIIGVTQPXXXXXXXXXXXXXQELGVRLGEEVGYAIRFEDRTSERTLIKYLTDGVLLREILSNPDLSPYSVIILDEAHERSLNTDILLGLVKRLVN----LRASKLKILITSATLDGEKVSKFFSNCPTLNVPGKLYPV 614
            PI +  +K+             G TGSGK+TQL + L+  G+++ G+IGVTQP             +E+   LG +VGY +RF+D +S+ T IKY+TDG LL+ IL +P+L+ +SVIILDEAHER+L TDIL GL+K+L       R   LK+++ SAT++  K+S FF NCP  ++PG+LYPV
Sbjct:   54 PIQKQRKKLIQAVRDNSFLIVTGNTGSGKTTQLPKYLYEAGFSQHGMIGVTQPRKVAAISVAQRVAEEMKCTLGSKVGYQVRFDDCSSKETAIKYMTDGCLLKHILGDPNLNKFSVIILDEAHERTLTTDILFGLLKKLFQDKSPNRKEHLKVVVMSATMELAKLSAFFGNCPIFDIPGRLYPV 237          
BLAST of EY753754 vs. ExPASy Swiss-Prot
Match: DHR2_YEAST (Probable ATP-dependent RNA helicase DHR2 OS=Saccharomyces cerevisiae GN=DHR2 PE=1 SV=1)

HSP 1 Score: 159.844 bits (403), Expect = 1.760e-38
Identity = 90/215 (41.86%), Postives = 130/215 (60.47%), Query Frame = 3
Query:    3 R*NPKTLILLESSKPRVN*SMA---NLPILQYEEKIXXXXXXXXXXXXIGETGSGKSTQLSQILHRHGYT--KSGIIGVTQPXXXXXXXXXXXXXQELGVRLGEEVGYAIRFEDRTSERTLIKYLTDGVLLREILSNPDLSPYSVIILDEAHERSLNTDILLGLVKRLVNLRASKLKILITSATLDGEKVSKFFSNCPTLNVPGKLYPVEILHSK 632
            R N + ++  +S K R +  +     LP+ Q++ +I            IGETGSGKSTQ+ Q +    Y   K G I VTQP             QE G +LGE+VGY++RF++ T+ RT +KYLTDG+LLRE++ N DL  YSVI++DEAHER++ TD++LG +K L+      L+I++ SATL  EK S+FF+N P L V G+ + V+  + K
Sbjct:   55 RSNKENVLTYKSLKSRASDLLKMRETLPVYQHKREIMSYIESNPVTVLIGETGSGKSTQIPQFVLEKLYDTKKHGSIAVTQPRRVAAINLATRVAQEHGCKLGEQVGYSVRFDNTTTTRTRLKYLTDGMLLRELMMNSDLREYSVIVIDEAHERTVLTDLILGFLKSLIQGPRPDLRIIVMSATLQAEKFSEFFNNAPILFVEGRKFDVKQYYLK 269          
BLAST of EY753754 vs. ExPASy Swiss-Prot
Match: DHX33_HUMAN (Putative ATP-dependent RNA helicase DHX33 OS=Homo sapiens GN=DHX33 PE=1 SV=1)

HSP 1 Score: 157.532 bits (397), Expect = 8.733e-38
Identity = 85/203 (41.87%), Postives = 124/203 (61.08%), Query Frame = 3
Query:   69 NLPILQYEEKIXXXXXXXXXXXXIGETGSGKSTQLSQILHRHGYTKSGIIGVTQPXXXXXXXXXXXXXQELGVRLGEEVGYAIRFEDRTSERTLIKYLTDGVLLREILSNPDLSPYSVIILDEAHERSLNTDILLGLV----KRLVNLRASKLKILITSATLDGEKVSKFFSNCPTLNVPGKLYPVEILHSKERXYSYLESAL 665
            +LPILQ   ++            IGETGSGK+TQ+ Q L+  G ++ GII VTQP              E    LG+ VGY +RF+D TSE T IK+LTDG+LLRE +S+  L  YS +ILDEAHER+++TD+L G+V    KR   L    LK+++ SAT+D +  S++F+  P L + G+ +P+++ ++K+    YL +AL
Sbjct:   73 SLPILQARGQLLAQLRNLDNAVLIGETGSGKTTQIPQYLYEGGISRQGIIAVTQPRRVAAISLATRVSDEKRTELGKLVGYTVRFDDVTSEDTGIKFLTDGMLLREAISDSLLRKYSCVILDEAHERTIHTDVLFGVVKAAQKRRKELGKLPLKVIVMSATMDVDLFSQYFNGAPVLYLEGRQHPIQVFYTKQPQNDYLHAAL 275          
BLAST of EY753754 vs. ExPASy Swiss-Prot
Match: DHX33_MOUSE (Putative ATP-dependent RNA helicase DHX33 OS=Mus musculus GN=Dhx33 PE=1 SV=1)

HSP 1 Score: 157.147 bits (396), Expect = 1.141e-37
Identity = 85/203 (41.87%), Postives = 123/203 (60.59%), Query Frame = 3
Query:   69 NLPILQYEEKIXXXXXXXXXXXXIGETGSGKSTQLSQILHRHGYTKSGIIGVTQPXXXXXXXXXXXXXQELGVRLGEEVGYAIRFEDRTSERTLIKYLTDGVLLREILSNPDLSPYSVIILDEAHERSLNTDILLGLV----KRLVNLRASKLKILITSATLDGEKVSKFFSNCPTLNVPGKLYPVEILHSKERXYSYLESAL 665
            +LPI +   ++            IGETGSGK+TQ+ Q L+  G ++ GII VTQP              E    LG+ VGY +RFED TSE T IK+LTDG+LLRE +S+  L  YS +ILDEAHER+++TD+L G+V    KR   L    LK+++ SAT+D +  S++F+  P L + G+ +P++I ++K+    YL +AL
Sbjct:   64 SLPIFRARGQLLAQLRNLDNAVLIGETGSGKTTQIPQYLYEGGISRQGIIAVTQPRRVAAISLATRVSDEKRTELGKLVGYTVRFEDVTSEDTRIKFLTDGMLLREAISDSLLRKYSCVILDEAHERTIHTDVLFGVVKTAQKRRKELGKLPLKVIVMSATMDVDLFSQYFNRAPVLYLEGRQHPIQIFYTKQPQQDYLHAAL 266          
BLAST of EY753754 vs. ExPASy Swiss-Prot
Match: HRPA_HAEIN (ATP-dependent RNA helicase hrpA homolog OS=Haemophilus influenzae GN=hrpA PE=3 SV=2)

HSP 1 Score: 153.68 bits (387), Expect = 1.261e-36
Identity = 88/217 (40.55%), Postives = 125/217 (57.60%), Query Frame = 3
Query:   69 NLPILQYEEKIXXXXXXXXXXXXIGETGSGKSTQLSQILHRHGYTKSGIIGVTQPXXXXXXXXXXXXXQELGVRLGEEVGYAIRFEDRTSERTLIKYLTDGVLLREILSNPDLSPYSVIILDEAHERSLNTDILLGLVKRLVNLRASKLKILITSATLDGEKVSKFFSNCPTLNVPGKLYPVEILHS---KERXYSYLESALKQHLYTCSRTRGDVL 710
            +LP+ Q + +I             GETGSGK+TQL ++    G+   G+IG TQP             +EL   LG  VGY +RF D+ S+ T IK +TDG+LL EI ++  L+ YS +I+DEAHERSLN D +LG +K+L+  R   LK++ITSAT+D E+ SK F+N P + V G+ YPVE+ +    +E     L+  L       +  RGD+L
Sbjct:   82 SLPVSQRKVEIQKLISEHQVIVVAGETGSGKTTQLPKMCLELGFGNLGMIGHTQPRRIAARSVAARIAEELETELGGLVGYKVRFNDQISDNTQIKLMTDGILLAEIQNDRFLNQYSCLIIDEAHERSLNNDFILGYLKQLLPRRRRDLKLIITSATIDVERFSKHFNNAPIIEVSGRTYPVEVRYRPVVEEDDQDQLQGILNAVDELQAEGRGDIL 298          
BLAST of EY753754 vs. ExPASy Swiss-Prot
Match: HRPA_ECOLI (ATP-dependent RNA helicase hrpA OS=Escherichia coli (strain K12) GN=hrpA PE=3 SV=3)

HSP 1 Score: 148.673 bits (374), Expect = 4.056e-35
Identity = 84/200 (42.00%), Postives = 116/200 (58.00%), Query Frame = 3
Query:   21 LILLESSKPRVN*SMANLPILQYEEKIXXXXXXXXXXXXIGETGSGKSTQLSQILHRHGYTKSGIIGVTQPXXXXXXXXXXXXXQELGVRLGEEVGYAIRFEDRTSERTLIKYLTDGVLLREILSNPDLSPYSVIILDEAHERSLNTDILLGLVKRLVNLRASKLKILITSATLDGEKVSKFFSNCPTLNVPGKLYPVEI 620
            ++L E+++P +     NLP+ Q ++ I             GETGSGK+TQL +I    G    G+IG TQP             +EL    G  +GY +RF D  S+ T++K +TDG+LL EI  +  L  Y  II+DEAHERSLN D LLG +K L+  R   LKI+ITSAT+D E+ S+ F+N P + V G+ YPVE+
Sbjct:   61 VLLREAARPEIT-YPDNLPVSQKKQDILEAIRDHQVVIVAGETGSGKTTQLPKICMELGRGIKGLIGHTQPRRLAARTVANRIAEELKTEPGGCIGYKVRFSDHVSDNTMVKLMTDGILLAEIQQDRLLMQYDTIIIDEAHERSLNIDFLLGYLKELLP-RRPDLKIIITSATIDPERFSRHFNNAPIIEVSGRTYPVEV 258          
BLAST of EY753754 vs. ExPASy Swiss-Prot
Match: YK99_SCHPO (Putative pre-mRNA-splicing factor ATP-dependent RNA helicase C20H4.09 OS=Schizosaccharomyces pombe GN=SPAC20H4.09 PE=2 SV=1)

HSP 1 Score: 147.902 bits (372), Expect = 6.919e-35
Identity = 79/202 (39.11%), Postives = 127/202 (62.87%), Query Frame = 3
Query:   72 LPILQYEEKIXXXXXXXXXXXXIGETGSGKSTQLSQILHRHGY-TKSGIIGVTQPXXXXXXXXXXXXXQELGVRLGEEVGYAIRFEDRTSERTLIKYLTDGVLLREILSNPDLSPYSVIILDEAHERSLNTDILLGLVKRLVNLRASKLKILITSATLDGEKVSKFF--SNCPTLNVPGKLYPVEILHSKERXYSYLESALK 668
            LPI +Y  ++            +G TG GK+TQ+ Q L+  G+ +++GIIG TQP              EL    G   GY+I+F+   SE+T IKY+TDG+LL EI  +P L  YS++ILDE HER+L+TD+LLG++KR++  R +  +++++SA++D  K+S+FF      T+++ GKL+PVE L  ++   +Y++SA++
Sbjct:   25 LPITKYRNQLLYAVEQNQITIVLGHTGCGKTTQIPQFLYEAGWASQNGIIGCTQPRRLVAKSVSERVSLELNSPPGSLCGYSIQFDHNVSEKTKIKYMTDGILLNEIFFDPLLERYSIVILDEVHERTLSTDLLLGVLKRILEKR-NDFRLVLSSASVDANKLSQFFGQDKVCTMSIEGKLFPVETLFLQKPTENYVDSAIE 225          
BLAST of EY753754 vs. ExPASy Swiss-Prot
Match: DHX35_HUMAN (Probable ATP-dependent RNA helicase DHX35 OS=Homo sapiens GN=DHX35 PE=1 SV=2)

HSP 1 Score: 147.902 bits (372), Expect = 6.919e-35
Identity = 90/244 (36.89%), Postives = 134/244 (54.92%), Query Frame = 3
Query:    9 NPKTLILLESSKPRVN*SMANLPILQYEEKIXXXXXXXXXXXXIGETGSGKSTQLSQILHRHGYTKSG-IIGVTQPXXXXXXXXXXXXXQELGVRLGEEVGYAIRFEDRTSE-RTLIKYLTDGVLLREILSNPDLSPYSVIILDEAHERSLNTDILLGLVKRLVNLRASKLKILITSATLDGEKVSKFFS----------NCPTLNVPGKLYPVEILHSKERXYSYLESALKQHLYTCSRTRGD 704
            NP   + +E  + +       LP+ +    I            +GETG GKSTQ+ Q L   G+T  G ++GVTQP             +E G  LG EVGY IRF+D T +  T IK+LTDG+L+RE++ +P L+ YSVI+LDEAHER+L TDI +GL+K++   R   L++++ SATLD +K   FF+           C  L V G+ +PV+I + +     Y++S + + +    +T GD
Sbjct:   40 NPYAALSIEQQRQK-------LPVFKLRNHILYLIENYQTVVIVGETGCGKSTQIPQYLAEAGWTAEGRVVGVTQPRRVAAVTVAGRVAEERGAVLGHEVGYCIRFDDCTDQLATRIKFLTDGMLVREMMVDPLLTKYSVIMLDEAHERTLYTDIAIGLLKKIQKKRGD-LRLIVASATLDADKFRDFFNQNETSDPARDTCVILTVEGRTFPVDIFYLQSPVPDYIKSTV-ETVVKIHQTEGD 274          
BLAST of EY753754 vs. ExPASy Swiss-Prot
Match: DHX35_PONAB (Probable ATP-dependent RNA helicase DHX35 OS=Pongo abelii GN=DHX35 PE=2 SV=1)

HSP 1 Score: 147.517 bits (371), Expect = 9.037e-35
Identity = 90/244 (36.89%), Postives = 134/244 (54.92%), Query Frame = 3
Query:    9 NPKTLILLESSKPRVN*SMANLPILQYEEKIXXXXXXXXXXXXIGETGSGKSTQLSQILHRHGYTKSG-IIGVTQPXXXXXXXXXXXXXQELGVRLGEEVGYAIRFEDRTSE-RTLIKYLTDGVLLREILSNPDLSPYSVIILDEAHERSLNTDILLGLVKRLVNLRASKLKILITSATLDGEKVSKFFS----------NCPTLNVPGKLYPVEILHSKERXYSYLESALKQHLYTCSRTRGD 704
            NP   + +E  + +       LP+ +    I            +GETG GKSTQ+ Q L   G+T  G ++GVTQP             +E G  LG EVGY IRF+D T +  T IK+LTDG+L+RE++ +P L+ YSVI+LDEAHER+L TDI +GL+K++   R   L++++ SATLD +K   FF+           C  L V G+ +PV+I + +     Y++S + + +    +T GD
Sbjct:   40 NPYAALSIEQQRQK-------LPVFKLRNHILYLIENYQTVVIVGETGCGKSTQIPQYLAEAGWTAEGRVVGVTQPRRVAAVTVAGRVAEERGAVLGHEVGYCIRFDDCTDQLATRIKFLTDGMLVREMMVDPLLTKYSVIMLDEAHERTLYTDIAIGLLKKIQKKRGD-LRLIVASATLDADKFRDFFNQNETSDPARDTCVILTVGGRTFPVDIFYLQSPVPDYIKSTV-ETVVKIHQTEGD 274          
BLAST of EY753754 vs. ExPASy Swiss-Prot
Match: DHX35_CAEEL (Probable ATP-dependent RNA helicase DHX35 homolog OS=Caenorhabditis elegans GN=Y67D2.6 PE=2 SV=1)

HSP 1 Score: 144.436 bits (363), Expect = 7.650e-34
Identity = 83/209 (39.71%), Postives = 122/209 (58.37%), Query Frame = 3
Query:   72 LPILQYEEKIXXXXXXXXXXXXIGETGSGKSTQLSQILHRHGYTKSGI-IGVTQPXXXXXXXXXXXXXQELGVRLGEEVGYAIRFEDRTSERTLIKYLTDGVLLREILSNPDLSPYSVIILDEAHERSLNTDILLGLVKRLVNLRASKLKILITSATLDGEKVSKFFSNCPT----------LNVPGKLYPVEILHSKERXYSYLESAL 665
            LPI +    I            +GETG GKSTQ+ Q L   G+   G  I +TQP             +E    LG +VGY +RF+D + + T +K++TDG+LLREIL++P LS YS+I++DEAHERS NTDILLGL+++++ +R + L+I+++SATLD E    FF    T          ++V G+ +PV + H+K     Y +SA+
Sbjct:   77 LPIFKNRGHILYMCERYRTIIIVGETGCGKSTQVPQFLLEAGWAADGRQIVITQPRRVAVVTLATRVAEEKDCILGHDVGYTVRFDDVSDKDTKVKFMTDGLLLREILADPLLSKYSIIMIDEAHERSCNTDILLGLLRKIIQIR-NDLRIIVSSATLDAELFKDFFEMNETGNSDKDTAGIISVEGRTHPVAVHHTKTSVPDYCQSAV 284          
The following BLAST results are available for this feature:
BLAST of EY753754 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 87
Match NameE-valueIdentityDescription
DHX40_RAT2.079e-3945.11Probable ATP-dependent RNA helicase DHX40 OS=Rattu... [more]
DHR2_YEAST1.760e-3841.86Probable ATP-dependent RNA helicase DHR2 OS=Saccha... [more]
DHX33_HUMAN8.733e-3841.87Putative ATP-dependent RNA helicase DHX33 OS=Homo ... [more]
DHX33_MOUSE1.141e-3741.87Putative ATP-dependent RNA helicase DHX33 OS=Mus m... [more]
HRPA_HAEIN1.261e-3640.55ATP-dependent RNA helicase hrpA homolog OS=Haemoph... [more]
HRPA_ECOLI4.056e-3542.00ATP-dependent RNA helicase hrpA OS=Escherichia col... [more]
YK99_SCHPO6.919e-3539.11Putative pre-mRNA-splicing factor ATP-dependent RN... [more]
DHX35_HUMAN6.919e-3536.89Probable ATP-dependent RNA helicase DHX35 OS=Homo ... [more]
DHX35_PONAB9.037e-3536.89Probable ATP-dependent RNA helicase DHX35 OS=Pongo... [more]
DHX35_CAEEL7.650e-3439.71Probable ATP-dependent RNA helicase DHX35 homolog ... [more]

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Properties
Property NameValue
Genbank descriptionCS12-C1-001-006-E07-CT.F Sweet orange leaf, field plant A Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY753754 ID=EY753754; Name=EY753754; organism=Citrus sinensis; type=EST; length=863bp
CACGATAAAATCCTAAAACCCTAATCTTGCTCGAAAGCTCCAAACCTCGA
GTTAATTGATCGATGGCGAATCTTCCGATTCTCCAATATGAAGAAAAGAT
AGTAGAAACGGTGGAGCAGAATCCAGTGGTGGTGGTTATCGGAGAGACGG
GGTCCGGCAAGAGCACGCAGCTCTCTCAGATACTCCACCGACATGGCTAC
ACCAAATCCGGAATTATTGGCGTTACTCAGCCTCGCCGAGTCGCTGCCGT
ATCCGTTGCCAGACGAGTTGCACAGGAACTTGGTGTTCGGCTTGGGGAGG
AAGTAGGTTATGCAATACGATTTGAGGATAGAACATCGGAAAGAACACTT
ATTAAATACCTTACTGATGGAGTTCTTCTTCGAGAAATTCTGTCTAATCC
AGATCTTAGTCCGTATTCAGTTATCATATTAGATGAAGCCCATGAGAGGA
GTCTCAACACGGACATATTGCTGGGTCTTGTGAAACGCTTGGTTAATTTG
CGAGCATCAAAATTAAAGATTTTGATCACGTCAGCAACTCTTGATGGTGA
AAAAGTTTCCAAGTTCTTTTCAAATTGCCCCACATTGAATGTCCCTGGAA
AGTTGTATCCTGTGGAGATATTGCACAGCAAGGAGCGTNCCTACAGCTAT
CTTGAGTCTGCTTTGAAACAGCATTTGTATACATGTTCGAGAACCAGAGG
TGACGTGTTGANTTCATGACTGGACAGATGAATTANAAAGCTAGTTTAAA
GGTAGAAGATAATTCAAAGCTGNATGAAGGTCCTGCATGATGCTGAATCC
TCCCCTCATGGNTCTTGCACCGAAAGCAGGTCGTGTATTTATCCTCCCCT
CCAATGTAGGCAT
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