EY753754

Overview
NameEY753754
Unique NameEY753754
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length863
Libraries
Library NameType
Sweet orange leaf, field plant Acdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY753754 vs. ExPASy Swiss-Prot
Match: DHR1_YEAST (Probable ATP-dependent RNA helicase DHR1 OS=Saccharomyces cerevisiae GN=ECM16 PE=1 SV=1)

HSP 1 Score: 135.576 bits (340), Expect = 3.554e-31
Identity = 85/223 (38.12%), Postives = 120/223 (53.81%), Query Frame = 3
Query:   72 LPILQYEEKIXXXXXXXXXXXXIGETGSGKSTQLSQILHRHGYTKS------GIIGVTQPXXXXXXXXXXXXXQELGVRLGEEVGYAIRFEDRTSERTLIKYLTDGVLLREILSNPDLSPYSVIILDEAHERSLNTDILLGLVKRLVNLRA----------SKLKILITSATLDGEKVSKFFSN-------CPTLNVPGKLYPVEILHSKERXYSYLESALKQ 671
            LP+   E KI             GETGSGK+TQ+ Q L+  G+         G++G+TQP              ELG   G +VGY IRF+    E T +K++TDGVLLRE++ +  L+ YS II+DEAHER++NTDIL+G++ R V LRA           KLK++I SATL   +VS F  N        P L V  + +PV I  ++   ++Y + A ++
Sbjct:  391 LPVFGEEHKIMEAIHHNDVVIICGETGSGKTTQVPQFLYEAGFGAEDSPDYPGMVGITQPRRVAAVSMAERVANELGDH-GHKVGYQIRFDSTAKEDTKVKFMTDGVLLREMMHDFKLTKYSSIIIDEAHERNINTDILIGMLSRCVRLRAKLHKENPIEHKKLKLIIMSATL---RVSDFSENKTLFPIAPPVLQVDARQFPVSIHFNRRTAFNYTDEAFRK 609          
BLAST of EY753754 vs. ExPASy Swiss-Prot
Match: KZ_DROME (Probable ATP-dependent RNA helicase kurz OS=Drosophila melanogaster GN=kz PE=1 SV=1)

HSP 1 Score: 135.191 bits (339), Expect = 4.641e-31
Identity = 89/212 (41.98%), Postives = 118/212 (55.66%), Query Frame = 3
Query:   72 LPILQYEEKIXXXXXXXXXXXXIGETGSGKSTQLSQILHRHGYTKSGIIGVTQPXXXXXXXXXXXXXQELGVRLGEEVGYAIRFEDRTSERTLIKYLTDGVLLREILSNPDLSPYSVIILDEAHERSLNTDILLGLVKRLVNLRASK---LKILITSATLDGEKVSKFFSNC-------PTLNVPGKLYPVEILHSKERXYSYLESALKQHL 677
            LPIL  E+++             GETGSGK+TQL Q L+  GY +  +IGVT+P              E+ +    EV Y IRFE   +  T IK++TDGVLL+EI ++  LS YSVIILDEAHERS+ TDIL+GL+ R+V LR  +   LK++I SATL   +VS F  N        P L V  + +PV I   K     Y+  A ++ L
Sbjct:  260 LPILAEEQQVMETINENPIVIVAGETGSGKTTQLPQFLYEAGYAQHKMIGVTEPRRVAAIAMSKRVAHEMNLP-ESEVSYLIRFEGNVTPATRIKFMTDGVLLKEIETDFLLSKYSVIILDEAHERSVYTDILVGLLSRIVPLRHKRGQPLKLIIMSATL---RVSDFTENTRLFKIPPPLLKVEARQFPVTIHFQKRTPDDYVAEAYRKTL 467          
BLAST of EY753754 vs. ExPASy Swiss-Prot
Match: YK16_SCHPO (Putative ATP-dependent RNA helicase PB1A10.06c OS=Schizosaccharomyces pombe GN=SPAPB1A10.06c PE=2 SV=1)

HSP 1 Score: 126.331 bits (316), Expect = 2.156e-28
Identity = 85/237 (35.86%), Postives = 121/237 (51.05%), Query Frame = 3
Query:   15 KTLILLESSKPRVN*SMANLPILQYEEKIXXXXXXXXXXXXIGETGSGKSTQLSQILHRHGYTKS-----GIIGVTQPXXXXXXXXXXXXXQELGVRLGEEVGYAIRFEDRTSERTLIKYLTDGVLLREILSNPDLSPYSVIILDEAHERSLNTDILLGLVKRLVNLR---------ASKLKILITSATLDGEKVSKFFSN-------CPTLNVPGKLYPVEILHSKERXYSYLESA 662
            KT   + +  P +  S   LPI+  E++I             G TGSGK+TQL Q L   G++       G+I +TQP             +EL      +V Y IRF+   +  T IK++TDG+LLRE+ S+  L+ YS +I+DEAHERS+NTDILLGL+ R+V LR            LK++I SATL   +V+ F  N        P + +  + YPV I  ++     YL+ A
Sbjct:  379 KTTYTIINRPPEIQESRLALPIVAEEQRIMEQIFANDVVIICGATGSGKTTQLPQFLFEAGFSSPESENPGMIAITQPRRVAAVSIAKRVSEEL-TGFSSKVSYQIRFDSTINPDTAIKFMTDGILLRELSSDFLLTAYSAVIVDEAHERSVNTDILLGLLSRIVRLRREMSKSDQKVKPLKLIIMSATL---RVTDFSENKLLFSVPPPIIKIDARQYPVSIHFNRTTKPDYLQDA 611          
BLAST of EY753754 vs. ExPASy Swiss-Prot
Match: DHX34_HUMAN (Probable ATP-dependent RNA helicase DHX34 OS=Homo sapiens GN=DHX34 PE=2 SV=1)

HSP 1 Score: 125.946 bits (315), Expect = 2.816e-28
Identity = 73/185 (39.46%), Postives = 102/185 (55.14%), Query Frame = 3
Query:   66 ANLPILQYEEKIXXXXXXXXXXXXIGETGSGKSTQLSQILHRHGYTKSGIIGVTQPXXXXXXXXXXXXXQELGVRLGEEVGYAIRFEDRTSERTLIKYLTDGVLLREILSNPDLSPYSVIILDEAHERSLNTDILLGLVKRLVNLRASKLKILITSATLDGEKVSKFFSNCPTLNVPGKLYPVEI 620
            A LPI QY  +I             G+TG GKSTQ+ Q L   G++    +  TQP              E   + G +VGY IRFE   S  T I +LT G+LLR+I   P L  Y V+I+DE HER L+ D LLG+++RL+  R   LK+++ SAT++    S +FSN P + VPG+L+P+ +
Sbjct:  160 AALPIAQYGNRILQTLKEHQVVVVAGDTGCGKSTQVPQYLLAAGFSH---VACTQPRRIACISLAKRVGFESLSQYGSQVGYQIRFESTRSAATKIVFLTVGLLLRQIQREPSLPQYEVLIVDEVHERHLHNDFLLGVLQRLLPTRPD-LKVILMSATINISLFSSYFSNAPVVQVPGRLFPITV 340          
BLAST of EY753754 vs. ExPASy Swiss-Prot
Match: DHX34_MOUSE (Probable ATP-dependent RNA helicase DHX34 OS=Mus musculus GN=Dhx34 PE=2 SV=2)

HSP 1 Score: 125.176 bits (313), Expect = 4.803e-28
Identity = 72/190 (37.89%), Postives = 105/190 (55.26%), Query Frame = 3
Query:   66 ANLPILQYEEKIXXXXXXXXXXXXIGETGSGKSTQLSQILHRHGYTKSGIIGVTQPXXXXXXXXXXXXXQELGVRLGEEVGYAIRFEDRTSERTLIKYLTDGVLLREILSNPDLSPYSVIILDEAHERSLNTDILLGLVKRLVNLRASKLKILITSATLDGEKVSKFFSNCPTLNVPGKLYPVEILHSKE 635
            A LPI QY  +I             G+TG GKSTQ+ Q L   G++    +  TQP              E   + G +VGY IRFE   S  T I +LT G+LLR+I   P L  Y V+I+DE HER L+ D LLG+++RL+  R   LK+++ SAT++    S +FS+ P + VPG+L+P+ +++  +
Sbjct:  162 AALPIAQYGNRILQTLKEHQVVVVAGDTGCGKSTQVPQYLLAAGFSH---VACTQPRRIACISLAKRVGFESLSQYGSQVGYQIRFESTRSAATKIVFLTVGLLLRQIQREPSLPQYQVLIVDEVHERHLHNDFLLGVLQRLLPQRPD-LKVILMSATINISLFSSYFSHAPVVQVPGRLFPITVVYQPQ 347          
BLAST of EY753754 vs. ExPASy Swiss-Prot
Match: RHA2_CAEEL (Putative ATP-dependent RNA helicase rha-2 OS=Caenorhabditis elegans GN=rha-2 PE=2 SV=2)

HSP 1 Score: 124.79 bits (312), Expect = 6.273e-28
Identity = 84/226 (37.17%), Postives = 123/226 (54.42%), Query Frame = 3
Query:   24 ILLESSKPRVN*SMANLPILQYEEKIXXXXXXXXXXXXIGETGSGKSTQLSQILHRHGYTKSG-IIGVTQPXXXXXXXXXXXXXQELGVRLG--EEVGYAIRFEDRTSERTLIKYLTDGVLLREILSNPDLSPYSVIILDEAHERSLNTDILLGLVKRLVNLR---ASKLKILITSAT--LDGEKVSKFFS--NCPTLNVPGKLYPVEILHSKERXYSYLESALKQ 671
            +++E SK  +  S A LPI   E +I             GETGSGK+TQ+ Q L+  GY   G +IG+T+P             Q +GV L   +EV Y IR+E   SE T I ++TDGVL++E+  +  L  YSVI++DEAHERS+ +D+L+G++ R+V LR   A  L+++I SAT  LD     K F       + V  + +PV +   K     Y+ SA ++
Sbjct:  221 VIVERSK-EIQKSRAELPIFAEEMRIVEAINENLVTVVCGETGSGKTTQIPQFLYEAGYASEGELIGITEPRRVAAIAMA----QRVGVELAKPDEVSYQIRYEGTRSETTNILFMTDGVLMKEMEQDVMLKKYSVILIDEAHERSMYSDVLIGMLSRIVPLRSKTARPLRLVIMSATLRLDDFTHKKLFPLLTPKVIKVDARQFPVSVHFEKRTPDDYIASAFRK 441          
BLAST of EY753754 vs. ExPASy Swiss-Prot
Match: DHX37_HUMAN (Probable ATP-dependent RNA helicase DHX37 OS=Homo sapiens GN=DHX37 PE=1 SV=1)

HSP 1 Score: 124.405 bits (311), Expect = 8.193e-28
Identity = 80/204 (39.22%), Postives = 113/204 (55.39%), Query Frame = 3
Query:   45 PRVN*SMANLPILQYEEKIXXXXXXXXXXXXIGETGSGKSTQLSQILHRHGYT-KSGIIGVTQPXXXXXXXXXXXXXQELGVRLGEEVGYAIRFEDRTSERTLIKYLTDGVLLREILSNPDLSPYSVIILDEAHERSLNTDILLGLVKRLVNLRASK---LKILITSATLDGEKVSK----FFSNCPTLNVPGKLYPVEILHSK 632
            P +      LPIL  E+ I             GETGSGK+TQ+ Q L+  G++ +  IIGVT+P             +E+ +     V Y IR+E   +E T IK++TDGVLL+EI  +  L  Y V+I+DEAHERS+ TDIL+GL+ R+V LRA +   LK+LI SATL  E  ++    F    P + V  + +PV +  +K
Sbjct:  243 PEMQEERLKLPILSEEQVIMEAVAEHPIVIVCGETGSGKTTQVPQFLYEAGFSSEDSIIGVTEPRRVAAVAMSQRVAKEMNLSQ-RVVSYQIRYEGNVTEETRIKFMTDGVLLKEIQKDFLLLRYKVVIIDEAHERSVYTDILIGLLSRIVTLRAKRNLPLKLLIMSATLRVEDFTQNPRLFAKPPPVIKVESRQFPVTVHFNK 445          
BLAST of EY753754 vs. ExPASy Swiss-Prot
Match: DHX29_MOUSE (ATP-dependent RNA helicase Dhx29 OS=Mus musculus GN=Dhx29 PE=2 SV=1)

HSP 1 Score: 118.242 bits (295), Expect = 5.871e-26
Identity = 72/199 (36.18%), Postives = 106/199 (53.27%), Query Frame = 3
Query:   72 LPILQYEEKIXXXXXXXXXXXXIGETGSGKSTQLSQ------ILHRHGYTKSGIIGVTQPXXXXXXXXXXXXXQELGVRLGEE-----VGYAIRFEDRTSERTLIKYLTDGVLLREILSNPDLSPYSVIILDEAHERSLNTDILLGLVKRLVNLRASKLKILITSATLDGEKVSKFFSNCPTLNVPGKLYPVEILHSKE 635
            LP+ ++ + I             GETGSGKSTQ+        +L   G  K  I+  TQP             +ELG   G        GY IR E R SE T + Y T GVLLR++  +  L+  S +I+DE HERS+ +D LL ++K ++  R S L +++ SAT+D +K S +F++CP L + G+ YPVE+ H ++
Sbjct:  571 LPVFKHRDSIVETLKRHRVVVVAGETGSGKSTQVPHFLLEDLLLDECGARKCNIV-CTQPRRISAVSLATRVCEELGCESGPGGRNSLCGYQIRMESRASESTRLLYCTTGVLLRKLQEDGLLADVSHVIVDEVHERSVQSDFLLVILKEILQKR-SDLHLILMSATVDSDKFSTYFTHCPILRISGRSYPVEVFHLED 767          
BLAST of EY753754 vs. ExPASy Swiss-Prot
Match: DHX15_STRPU (Putative pre-mRNA-splicing factor ATP-dependent RNA helicase PRP1 (Fragment) OS=Strongylocentrotus purpuratus GN=PRP1 PE=2 SV=1)

HSP 1 Score: 115.931 bits (289), Expect = 2.914e-25
Identity = 59/122 (48.36%), Postives = 84/122 (68.85%), Query Frame = 3
Query:  351 IKYLTDGVLLREILSNPDLSPYSVIILDEAHERSLNTDILLGLVKRLVNLRASKLKILITSATLDGEKVSKFFSNCPTLNVPGKLYPVEILHSKERXYSYLESALKQ--HLYTCSRTRGDVL 710
            IKY+TDG+LLRE +++P L  Y VI+LDEAHER++ TDIL+GL+K  V  + S LK+++ SATLD  K   +F N P + VPG+ +PVEI ++ E    YLE+A++    ++ C    GDVL
Sbjct:    1 IKYMTDGMLLREGMTDPLLERYGVILLDEAHERTVATDILMGLLKE-VEKQRSDLKLVVMSATLDAGKFQHYFDNAPLMTVPGRTHPVEIFYTPEPERDYLEAAIRTVVQIHMCEEVEGDVL 121          
BLAST of EY753754 vs. ExPASy Swiss-Prot
Match: DHX29_HUMAN (ATP-dependent RNA helicase DHX29 OS=Homo sapiens GN=DHX29 PE=1 SV=2)

HSP 1 Score: 115.546 bits (288), Expect = 3.806e-25
Identity = 72/199 (36.18%), Postives = 105/199 (52.76%), Query Frame = 3
Query:   72 LPILQYEEKIXXXXXXXXXXXXIGETGSGKSTQLSQ------ILHRHGYTKSGIIGVTQPXXXXXXXXXXXXXQELGVRLGEE-----VGYAIRFEDRTSERTLIKYLTDGVLLREILSNPDLSPYSVIILDEAHERSLNTDILLGLVKRLVNLRASKLKILITSATLDGEKVSKFFSNCPTLNVPGKLYPVEILHSKE 635
            LP+ ++ + I             GETGSGKSTQ+        +L+    +K  I+  TQP              ELG   G        GY IR E R  E T + Y T GVLLR++  +  LS  S +I+DE HERS+ +D LL ++K ++  R S L +++ SAT+D EK S +F++CP L + G+ YPVE+ H ++
Sbjct:  572 LPVFKHRDSIVETLKRHRVVVVAGETGSGKSTQVPHFLLEDLLLNEWEASKCNIV-CTQPRRISAVSLANRVCDELGCENGPGGRNSLCGYQIRMESRACESTRLLYCTTGVLLRKLQEDGLLSNVSHVIVDEVHERSVQSDFLLIILKEILQKR-SDLHLILMSATVDSEKFSTYFTHCPILRISGRSYPVEVFHLED 768          
The following BLAST results are available for this feature:
BLAST of EY753754 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 87
Match NameE-valueIdentityDescription
DHR1_YEAST3.554e-3138.12Probable ATP-dependent RNA helicase DHR1 OS=Saccha... [more]
KZ_DROME4.641e-3141.98Probable ATP-dependent RNA helicase kurz OS=Drosop... [more]
YK16_SCHPO2.156e-2835.86Putative ATP-dependent RNA helicase PB1A10.06c OS=... [more]
DHX34_HUMAN2.816e-2839.46Probable ATP-dependent RNA helicase DHX34 OS=Homo ... [more]
DHX34_MOUSE4.803e-2837.89Probable ATP-dependent RNA helicase DHX34 OS=Mus m... [more]
RHA2_CAEEL6.273e-2837.17Putative ATP-dependent RNA helicase rha-2 OS=Caeno... [more]
DHX37_HUMAN8.193e-2839.22Probable ATP-dependent RNA helicase DHX37 OS=Homo ... [more]
DHX29_MOUSE5.871e-2636.18ATP-dependent RNA helicase Dhx29 OS=Mus musculus G... [more]
DHX15_STRPU2.914e-2548.36Putative pre-mRNA-splicing factor ATP-dependent RN... [more]
DHX29_HUMAN3.806e-2536.18ATP-dependent RNA helicase DHX29 OS=Homo sapiens G... [more]

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Properties
Property NameValue
Genbank descriptionCS12-C1-001-006-E07-CT.F Sweet orange leaf, field plant A Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY753754 ID=EY753754; Name=EY753754; organism=Citrus sinensis; type=EST; length=863bp
CACGATAAAATCCTAAAACCCTAATCTTGCTCGAAAGCTCCAAACCTCGA
GTTAATTGATCGATGGCGAATCTTCCGATTCTCCAATATGAAGAAAAGAT
AGTAGAAACGGTGGAGCAGAATCCAGTGGTGGTGGTTATCGGAGAGACGG
GGTCCGGCAAGAGCACGCAGCTCTCTCAGATACTCCACCGACATGGCTAC
ACCAAATCCGGAATTATTGGCGTTACTCAGCCTCGCCGAGTCGCTGCCGT
ATCCGTTGCCAGACGAGTTGCACAGGAACTTGGTGTTCGGCTTGGGGAGG
AAGTAGGTTATGCAATACGATTTGAGGATAGAACATCGGAAAGAACACTT
ATTAAATACCTTACTGATGGAGTTCTTCTTCGAGAAATTCTGTCTAATCC
AGATCTTAGTCCGTATTCAGTTATCATATTAGATGAAGCCCATGAGAGGA
GTCTCAACACGGACATATTGCTGGGTCTTGTGAAACGCTTGGTTAATTTG
CGAGCATCAAAATTAAAGATTTTGATCACGTCAGCAACTCTTGATGGTGA
AAAAGTTTCCAAGTTCTTTTCAAATTGCCCCACATTGAATGTCCCTGGAA
AGTTGTATCCTGTGGAGATATTGCACAGCAAGGAGCGTNCCTACAGCTAT
CTTGAGTCTGCTTTGAAACAGCATTTGTATACATGTTCGAGAACCAGAGG
TGACGTGTTGANTTCATGACTGGACAGATGAATTANAAAGCTAGTTTAAA
GGTAGAAGATAATTCAAAGCTGNATGAAGGTCCTGCATGATGCTGAATCC
TCCCCTCATGGNTCTTGCACCGAAAGCAGGTCGTGTATTTATCCTCCCCT
CCAATGTAGGCAT
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