EY753754

Overview
NameEY753754
Unique NameEY753754
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length863
Libraries
Library NameType
Sweet orange leaf, field plant Acdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY753754 vs. ExPASy Swiss-Prot
Match: DHX29_XENLA (ATP-dependent RNA helicase DHX29 OS=Xenopus laevis GN=dhx29 PE=2 SV=1)

HSP 1 Score: 110.538 bits (275), Expect = 1.224e-23
Identity = 66/175 (37.71%), Postives = 97/175 (55.43%), Query Frame = 3
Query:  141 GETGSGKSTQLSQILHRHGYTKSGIIG-----VTQPXXXXXXXXXXXXXQELGVRLGEE-----VGYAIRFEDRTSERTLIKYLTDGVLLREILSNPDLSPYSVIILDEAHERSLNTDILLGLVKRLVNLRASKLKILITSATLDGEKVSKFFSNCPTLNVPGKLYPVEILHSKE 635
            GETGSGKSTQ+ Q L        G  G      TQP             +ELG   G        GY IR E RT E T + Y T G+LLR++  +  L   S II+DE HER++ +D LL +++ +++ R S L +++ SAT+D EK S +F++CP + + G+ +PVE+ H ++
Sbjct:  589 GETGSGKSTQVPQFLLEDLLFNGGSPGKCNIVCTQPRRISAMSLATRVCEELGCDSGPGGKNSLCGYQIRMESRTGEATRLLYCTTGILLRKLQEDSMLKNISHIIVDEVHERTVQSDFLLIILREILHKR-SDLHLVLMSATVDCEKFSSYFTHCPIIRISGRTFPVEVFHLED 762          
BLAST of EY753754 vs. ExPASy Swiss-Prot
Match: DHX30_HUMAN (Putative ATP-dependent RNA helicase DHX30 OS=Homo sapiens GN=DHX30 PE=1 SV=1)

HSP 1 Score: 109.768 bits (273), Expect = 2.088e-23
Identity = 70/208 (33.65%), Postives = 106/208 (50.96%), Query Frame = 3
Query:   72 LPILQYEEKIXXXXXXXXXXXXIGETGSGKSTQLSQILHRHGYTKSG----IIGVTQPXXXXXXXXXXXXXQELGVRLGEEVGYAIRFEDRTSERT-LIKYLTDGVLLREILSNPDLSPYSVIILDEAHERSLNTDILLGLVKRLVNLRASKLKILITSATLDGEKVSKFFSNCPTLNVPGKLYPVEILHSKERXYSYLESALKQHLY 680
            LP+  + + I             G+TG GK+T++ Q+L     T+       + +TQP              ELG  L   VG+ +R E +   R   + + T G+LLR++ SNP L   S +I+DE HER +NTD LL L+K L  L  + L++++ SAT D E+ S++F  CP + VPG +YPV     KE     + + L +H Y
Sbjct:  434 LPVDPHRDTILNAIEQHPVVVISGDTGCGKTTRIPQLLLERYVTEGRGARCNVIITQPRRISAVSVAQRVSHELGPSLRRNVGFQVRLESKPPSRGGALLFCTVGILLRKLQSNPSLEGVSHVIVDEVHERDVNTDFLLILLKGLQRLNPA-LRLVLMSATGDNERFSRYFGGCPVIKVPGFMYPV-----KEHYLEDILAKLGKHQY 635          
BLAST of EY753754 vs. ExPASy Swiss-Prot
Match: DHX30_CHICK (Putative ATP-dependent RNA helicase DHX30 OS=Gallus gallus GN=DHX30 PE=2 SV=1)

HSP 1 Score: 109.768 bits (273), Expect = 2.088e-23
Identity = 65/194 (33.51%), Postives = 103/194 (53.09%), Query Frame = 3
Query:   72 LPILQYEEKIXXXXXXXXXXXXIGETGSGKSTQLSQILHRHGYTKSGI-----IGVTQPXXXXXXXXXXXXXQELGVRLGEEVGYAIRFEDRTSERT-LIKYLTDGVLLREILSNPDLSPYSVIILDEAHERSLNTDILLGLVKRLVNLRASKLKILITSATLDGEKVSKFFSNCPTLNVPGKLYPVEILHSKE 635
            LP+  +++ I             G+TG GK+T++ Q+L  H Y   G      + +TQP             QELG  + + VGY +R E +   R   + + T G+LLR++  NP L   S +++DE HER +NTD LL L+K +  L    L++++ SAT D ++ S +F  CP + VPG +YPV+  + +E
Sbjct:  478 LPVDPHKDTILSAIEQNPVVVIAGDTGCGKTTRIPQLLLEH-YILEGRGARCNVVITQPRRISAISVAQRVAQELGPNMRKNVGYQVRLESKPPARGGALLFCTVGILLRKLQGNPSLEGVSHVVVDEVHERDVNTDFLLILLKGIQKLNPD-LRLVLMSATGDNQRFSHYFGGCPVVKVPGFMYPVKEYYLEE 669          
BLAST of EY753754 vs. ExPASy Swiss-Prot
Match: DHX30_RAT (Putative ATP-dependent RNA helicase DHX30 OS=Rattus norvegicus GN=Dhx30 PE=2 SV=1)

HSP 1 Score: 109.383 bits (272), Expect = 2.727e-23
Identity = 70/208 (33.65%), Postives = 106/208 (50.96%), Query Frame = 3
Query:   72 LPILQYEEKIXXXXXXXXXXXXIGETGSGKSTQLSQILHRHGYTKSG----IIGVTQPXXXXXXXXXXXXXQELGVRLGEEVGYAIRFEDRTSERT-LIKYLTDGVLLREILSNPDLSPYSVIILDEAHERSLNTDILLGLVKRLVNLRASKLKILITSATLDGEKVSKFFSNCPTLNVPGKLYPVEILHSKERXYSYLESALKQHLY 680
            LP+  + + I             G+TG GK+T++ Q+L     T+       + +TQP              ELG  L   VG+ +R E +   R   + + T G+LLR++ SNP L   S +I+DE HER +NTD LL L+K L  L  + L++++ SAT D E+ S++F  CP + VPG +YPV     KE     + + L +H Y
Sbjct:  434 LPVDPHRDTILSAIEQHPVVVISGDTGCGKTTRIPQLLLERYVTEGRGARCNVIITQPRRISAVSVAQRVSHELGPSLRRNVGFQVRLESKPPARGGALLFCTVGILLRKLQSNPSLEGVSHVIVDEVHERDVNTDFLLILLKGLQRLNPA-LRLVLMSATGDNERFSRYFGGCPVIKVPGFMYPV-----KEHYLEDILAKLGKHQY 635          
BLAST of EY753754 vs. ExPASy Swiss-Prot
Match: DHX30_PONAB (Putative ATP-dependent RNA helicase DHX30 OS=Pongo abelii GN=DHX30 PE=2 SV=1)

HSP 1 Score: 109.383 bits (272), Expect = 2.727e-23
Identity = 70/208 (33.65%), Postives = 106/208 (50.96%), Query Frame = 3
Query:   72 LPILQYEEKIXXXXXXXXXXXXIGETGSGKSTQLSQILHRHGYTKSG----IIGVTQPXXXXXXXXXXXXXQELGVRLGEEVGYAIRFEDRTSERT-LIKYLTDGVLLREILSNPDLSPYSVIILDEAHERSLNTDILLGLVKRLVNLRASKLKILITSATLDGEKVSKFFSNCPTLNVPGKLYPVEILHSKERXYSYLESALKQHLY 680
            LP+  + + I             G+TG GK+T++ Q+L     T+       + +TQP              ELG  L   VG+ +R E +   R   + + T G+LLR++ SNP L   S +I+DE HER +NTD LL L+K L  L  + L++++ SAT D E+ S++F  CP + VPG +YPV     KE     + + L +H Y
Sbjct:  434 LPVDPHRDTILNAIEQHPVVVISGDTGCGKTTRIPQLLLERYVTEGRGARCNVIITQPRRISAVSVAQRVSHELGPSLRRNVGFQVRLESKPPARGGALLFCTVGILLRKLQSNPSLEGVSHVIVDEVHERDVNTDFLLILLKGLQRLNPA-LRLVLMSATGDNERFSRYFGGCPVIKVPGFMYPV-----KEHYLEDILAKLGKHQY 635          
BLAST of EY753754 vs. ExPASy Swiss-Prot
Match: DHX30_MOUSE (Putative ATP-dependent RNA helicase DHX30 OS=Mus musculus GN=Dhx30 PE=2 SV=1)

HSP 1 Score: 109.383 bits (272), Expect = 2.727e-23
Identity = 70/208 (33.65%), Postives = 106/208 (50.96%), Query Frame = 3
Query:   72 LPILQYEEKIXXXXXXXXXXXXIGETGSGKSTQLSQILHRHGYTKSG----IIGVTQPXXXXXXXXXXXXXQELGVRLGEEVGYAIRFEDRTSERT-LIKYLTDGVLLREILSNPDLSPYSVIILDEAHERSLNTDILLGLVKRLVNLRASKLKILITSATLDGEKVSKFFSNCPTLNVPGKLYPVEILHSKERXYSYLESALKQHLY 680
            LP+  + + I             G+TG GK+T++ Q+L     T+       + +TQP              ELG  L   VG+ +R E +   R   + + T G+LLR++ SNP L   S +I+DE HER +NTD LL L+K L  L  + L++++ SAT D E+ S++F  CP + VPG +YPV     KE     + + L +H Y
Sbjct:  457 LPVDPHRDTILSAIEQHPVVVISGDTGCGKTTRIPQLLLERYVTEGRGARCNVIITQPRRISAVSVAQRVSHELGPSLRRNVGFQVRLESKPPARGGALLFCTVGILLRKLQSNPSLEGVSHVIVDEVHERDVNTDFLLILLKGLQRLNPA-LRLVLMSATGDNERFSRYFGGCPVIKVPGFMYPV-----KEHYLEDILAKLGKHQY 658          
BLAST of EY753754 vs. ExPASy Swiss-Prot
Match: DHX30_BOVIN (Putative ATP-dependent RNA helicase DHX30 OS=Bos taurus GN=DHX30 PE=2 SV=1)

HSP 1 Score: 108.997 bits (271), Expect = 3.562e-23
Identity = 69/208 (33.17%), Postives = 106/208 (50.96%), Query Frame = 3
Query:   72 LPILQYEEKIXXXXXXXXXXXXIGETGSGKSTQLSQILHRHGYTKSG----IIGVTQPXXXXXXXXXXXXXQELGVRLGEEVGYAIRFEDRTSERT-LIKYLTDGVLLREILSNPDLSPYSVIILDEAHERSLNTDILLGLVKRLVNLRASKLKILITSATLDGEKVSKFFSNCPTLNVPGKLYPVEILHSKERXYSYLESALKQHLY 680
            LP+  + + I             G+TG GK+T++ Q+L     T+       + +TQP              ELG  L   VG+ +R E +   R   + + T G+LLR++ SNP L   S +++DE HER +NTD LL L+K L  L  + L++++ SAT D E+ S++F  CP + VPG +YPV     KE     + + L +H Y
Sbjct:  460 LPVDPHRDTILNAIEQHPVVVIAGDTGCGKTTRIPQLLLERYVTEGRGARCNVIITQPRRISAVSVAQRVSHELGPTLRRNVGFQVRLESKPPARGGALLFCTVGILLRKLQSNPSLEGVSHVVVDEEHERDVNTDFLLILLKGLQRLNPA-LRLVLMSATGDNERFSRYFGGCPVIKVPGFMYPV-----KEHYLEDILAKLGKHQY 661          
BLAST of EY753754 vs. ExPASy Swiss-Prot
Match: DHX32_HUMAN (Putative pre-mRNA-splicing factor ATP-dependent RNA helicase DHX32 OS=Homo sapiens GN=DHX32 PE=1 SV=1)

HSP 1 Score: 107.842 bits (268), Expect = 7.935e-23
Identity = 66/180 (36.67%), Postives = 100/180 (55.56%), Query Frame = 3
Query:  141 GETGSGKSTQLSQILHRH----GYTKSGIIGVTQPXXXXXXXXXXXXXQELGVRLGEEVGYAIRFEDRTSERTLIKYLTDGVLLREILSNPDLSPYSVIILDEAHERSLNTDILLGLVKRLVNLRASKLKILITSATLDGEKVSKFFSNCPTLNVPGKLYPVEILHSKERXYSYLESALK 668
            G+   GKS Q+ Q    +     Y   G+I  TQ               E+ V +G EVGY I FE+  +  T+++Y TD +L RE++SNP L  Y VIILD+ HERS+ TD+LLGL+K ++ L   +LK++I S+     K++ ++ N P + V  K +PVE+++  E      ES L+
Sbjct:   85 GDAKCGKSAQVPQWCAEYCLSIHYQHGGVI-CTQVHKQTVVQLALRVADEMDVNIGHEVGYVIPFENCCTNETILRYCTDDMLQREMMSNPFLGSYGVIILDDIHERSIATDVLLGLLKDVL-LARPELKLIINSSPHLISKLNSYYGNVPVIEVKNK-HPVEVVYLSEAQKDSFESILR 261          
BLAST of EY753754 vs. ExPASy Swiss-Prot
Match: DHX32_MOUSE (Putative pre-mRNA-splicing factor ATP-dependent RNA helicase DHX32 OS=Mus musculus GN=Dhx32 PE=2 SV=2)

HSP 1 Score: 106.686 bits (265), Expect = 1.768e-22
Identity = 64/180 (35.56%), Postives = 101/180 (56.11%), Query Frame = 3
Query:  141 GETGSGKSTQLSQILHRH----GYTKSGIIGVTQPXXXXXXXXXXXXXQELGVRLGEEVGYAIRFEDRTSERTLIKYLTDGVLLREILSNPDLSPYSVIILDEAHERSLNTDILLGLVKRLVNLRASKLKILITSATLDGEKVSKFFSNCPTLNVPGKLYPVEILHSKERXYSYLESALK 668
            G++  GKS+Q+ Q    +     Y   G+I  TQ               E+ V +G EVGY I FE+  +  T+++Y TD +L RE++SNP L  Y VIILD+ HERSL TD+LLGL+K ++ L   +LK+++  + L   K+S ++ + P + V  K +PVE+++         ES ++
Sbjct:   85 GDSKCGKSSQVPQWCAEYCLSIHYQHGGVI-CTQAHKQTAVQLALRVADEMDVNIGHEVGYVIPFENCCTTETILRYCTDDMLQREMMSNPFLGSYGVIILDDVHERSLATDVLLGLLKDVL-LARPELKLIVNCSPLLTSKLSSYYGDVPVIEVRNK-HPVEVVYLSGAQKDSFESVIR 261          
BLAST of EY753754 vs. ExPASy Swiss-Prot
Match: DHX36_HUMAN (Probable ATP-dependent RNA helicase DHX36 OS=Homo sapiens GN=DHX36 PE=1 SV=1)

HSP 1 Score: 104.76 bits (260), Expect = 6.717e-22
Identity = 69/194 (35.57%), Postives = 103/194 (53.09%), Query Frame = 3
Query:  141 GETGSGKSTQLSQILH----RHGYTKSGIIGVTQPXXXXXXXXXXXXXQELGVRLGE--EVGYAIRFEDRTSERT-LIKYLTDGVLLREILSNPDLSPYSVIILDEAHERSLNTDILLGLVKRLVNLRASKLKILITSATLDGEKVSKFFSNCPTLNVPGKLYPVEILHSKERXYSYLESALKQHLYTCSRTRG 701
            GETG GK+TQ++Q +       G   +  I  TQP              E     G     GY IR + R   +   I Y T G++L+ + S+P LS  S I+LDE HER+L +D+L+ +VK L+N R S LK+++ SATL+ EK S++F NCP +++PG  +PV + +  E     +    +Q  + C   RG
Sbjct:  230 GETGCGKTTQVTQFILDNYIERGKGSACRIVCTQPRRISAISVAERVAAERAESCGSGNSTGYQIRLQSRLPRKQGSILYCTTGIILQWLQSDPYLSSVSHIVLDEIHERNLQSDVLMTVVKDLLNFR-SDLKVILMSATLNAEKFSEYFGNCPMIHIPGFTFPV-VEYLLEDVIEKIRYVPEQKEHRCQFKRG 421          
The following BLAST results are available for this feature:
BLAST of EY753754 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 87
Match NameE-valueIdentityDescription
DHX29_XENLA1.224e-2337.71ATP-dependent RNA helicase DHX29 OS=Xenopus laevis... [more]
DHX30_HUMAN2.088e-2333.65Putative ATP-dependent RNA helicase DHX30 OS=Homo ... [more]
DHX30_CHICK2.088e-2333.51Putative ATP-dependent RNA helicase DHX30 OS=Gallu... [more]
DHX30_RAT2.727e-2333.65Putative ATP-dependent RNA helicase DHX30 OS=Rattu... [more]
DHX30_PONAB2.727e-2333.65Putative ATP-dependent RNA helicase DHX30 OS=Pongo... [more]
DHX30_MOUSE2.727e-2333.65Putative ATP-dependent RNA helicase DHX30 OS=Mus m... [more]
DHX30_BOVIN3.562e-2333.17Putative ATP-dependent RNA helicase DHX30 OS=Bos t... [more]
DHX32_HUMAN7.935e-2336.67Putative pre-mRNA-splicing factor ATP-dependent RN... [more]
DHX32_MOUSE1.768e-2235.56Putative pre-mRNA-splicing factor ATP-dependent RN... [more]
DHX36_HUMAN6.717e-2235.57Probable ATP-dependent RNA helicase DHX36 OS=Homo ... [more]

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Properties
Property NameValue
Genbank descriptionCS12-C1-001-006-E07-CT.F Sweet orange leaf, field plant A Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY753754 ID=EY753754; Name=EY753754; organism=Citrus sinensis; type=EST; length=863bp
CACGATAAAATCCTAAAACCCTAATCTTGCTCGAAAGCTCCAAACCTCGA
GTTAATTGATCGATGGCGAATCTTCCGATTCTCCAATATGAAGAAAAGAT
AGTAGAAACGGTGGAGCAGAATCCAGTGGTGGTGGTTATCGGAGAGACGG
GGTCCGGCAAGAGCACGCAGCTCTCTCAGATACTCCACCGACATGGCTAC
ACCAAATCCGGAATTATTGGCGTTACTCAGCCTCGCCGAGTCGCTGCCGT
ATCCGTTGCCAGACGAGTTGCACAGGAACTTGGTGTTCGGCTTGGGGAGG
AAGTAGGTTATGCAATACGATTTGAGGATAGAACATCGGAAAGAACACTT
ATTAAATACCTTACTGATGGAGTTCTTCTTCGAGAAATTCTGTCTAATCC
AGATCTTAGTCCGTATTCAGTTATCATATTAGATGAAGCCCATGAGAGGA
GTCTCAACACGGACATATTGCTGGGTCTTGTGAAACGCTTGGTTAATTTG
CGAGCATCAAAATTAAAGATTTTGATCACGTCAGCAACTCTTGATGGTGA
AAAAGTTTCCAAGTTCTTTTCAAATTGCCCCACATTGAATGTCCCTGGAA
AGTTGTATCCTGTGGAGATATTGCACAGCAAGGAGCGTNCCTACAGCTAT
CTTGAGTCTGCTTTGAAACAGCATTTGTATACATGTTCGAGAACCAGAGG
TGACGTGTTGANTTCATGACTGGACAGATGAATTANAAAGCTAGTTTAAA
GGTAGAAGATAATTCAAAGCTGNATGAAGGTCCTGCATGATGCTGAATCC
TCCCCTCATGGNTCTTGCACCGAAAGCAGGTCGTGTATTTATCCTCCCCT
CCAATGTAGGCAT
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