EY753754

Overview
NameEY753754
Unique NameEY753754
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length863
Libraries
Library NameType
Sweet orange leaf, field plant Acdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY753754 vs. ExPASy Swiss-Prot
Match: YTDC2_MOUSE (Probable ATP-dependent RNA helicase YTHDC2 OS=Mus musculus GN=Ythdc2 PE=2 SV=1)

HSP 1 Score: 103.219 bits (256), Expect = 1.954e-21
Identity = 68/209 (32.54%), Postives = 112/209 (53.59%), Query Frame = 3
Query:   69 NLPILQYEEKIXXXXXXXXXXXXIGETGSGKSTQLSQILHRHGYTKSGI---IGVTQPXXXXXXXXXXXXXQELGVRLGEEVGYAIRFEDRTSERTLIKYLTDGVLLREILS-NPDLSPYSVIILDEAHERSLNTDILLGLVKRLVNLRASKLKILITSATLDGEKVSKFFSNCPTLNVPGKLYPVEILHSKERXYSYLESALKQHLYT 683
            +LP+ + +E+I            +GETGSGK+TQ+ Q L    + K+GI   I  TQP              E   R+G+ +GY IR E R S +TL+ + T+GVLLR +++ +  LS  + +I+DE HER   +D LL  ++ L+  +   LK++++SA LD     ++F +CP + + G+ + V+ +        +LE  L+   YT
Sbjct:  207 SLPVFEKQEEIVKIIKENKVVLIVGETGSGKTTQIPQFLLDDCF-KNGIPCRIFCTQPRRLAAIAVAERVAAERRERIGQTIGYQIRLESRVSPKTLLTFCTNGVLLRTLMAGDSTLSTVTHVIVDEVHERDRFSDFLLTKLRDLLQ-KHPTLKLILSSAALDVNLFIRYFGSCPVIYIQGRPFEVKEM--------FLEDILRTTGYT 405          
BLAST of EY753754 vs. ExPASy Swiss-Prot
Match: YTDC2_HUMAN (Probable ATP-dependent RNA helicase YTHDC2 OS=Homo sapiens GN=YTHDC2 PE=1 SV=2)

HSP 1 Score: 103.219 bits (256), Expect = 1.954e-21
Identity = 68/209 (32.54%), Postives = 112/209 (53.59%), Query Frame = 3
Query:   69 NLPILQYEEKIXXXXXXXXXXXXIGETGSGKSTQLSQILHRHGYTKSGI---IGVTQPXXXXXXXXXXXXXQELGVRLGEEVGYAIRFEDRTSERTLIKYLTDGVLLREILS-NPDLSPYSVIILDEAHERSLNTDILLGLVKRLVNLRASKLKILITSATLDGEKVSKFFSNCPTLNVPGKLYPVEILHSKERXYSYLESALKQHLYT 683
            +LP+ + +E+I            +GETGSGK+TQ+ Q L    + K+GI   I  TQP              E   R+G+ +GY IR E R S +TL+ + T+GVLLR +++ +  LS  + +I+DE HER   +D LL  ++ L+  +   LK++++SA LD     ++F +CP + + G+ + V+ +        +LE  L+   YT
Sbjct:  192 SLPVFEKQEEIVKIIKENKVVLIVGETGSGKTTQIPQFLLDDCF-KNGIPCRIFCTQPRRLAAIAVAERVAAERRERIGQTIGYQIRLESRVSPKTLLTFCTNGVLLRTLMAGDSTLSTVTHVIVDEVHERDRFSDFLLTKLRDLLQ-KHPTLKLILSSAALDVNLFIRYFGSCPVIYIQGRPFEVKEM--------FLEDILRTTGYT 390          
BLAST of EY753754 vs. ExPASy Swiss-Prot
Match: YL419_YEAST (Putative ATP-dependent RNA helicase YLR419W OS=Saccharomyces cerevisiae GN=YLR419W PE=1 SV=1)

HSP 1 Score: 101.293 bits (251), Expect = 7.427e-21
Identity = 58/163 (35.58%), Postives = 93/163 (57.06%), Query Frame = 3
Query:  141 GETGSGKSTQLSQILHRHGYTKSGIIG-----VTQPXXXXXXXXXXXXXQELGVRLGEEVGYAIRFEDRTSERTLIKYLTDGVLLREILSNPDLSPYSVIILDEAHERSLNTDILLGLVKRLVNLRASKLKILITSATLDGEKVSKFFSNCPTLNVPGKLYPV 614
            GETGSGKSTQ+ Q +      + G  G      TQP              E  V  GEEVGY IR  ++T   T IK++T GVL+R + +   +   +++++DE HERS++TD+++ L+K L++ R   +KI++ SAT++ +   KFF    T ++ G+ +P+
Sbjct:  627 GETGSGKSTQVVQFILDFLQKEKGDFGKTKIVCTQPRRISAIGLAERVSDERCVTCGEEVGYVIRGVNKTKASTRIKFMTTGVLVRLLQNARTMLENTIVVIDEVHERSIDTDLIVTLMKNLLH-RVRGMKIVLMSATVNVDLFKKFFPGLATCHIEGRTFPI 788          
BLAST of EY753754 vs. ExPASy Swiss-Prot
Match: DHX57_MOUSE (Putative ATP-dependent RNA helicase DHX57 OS=Mus musculus GN=Dhx57 PE=2 SV=2)

HSP 1 Score: 100.908 bits (250), Expect = 9.700e-21
Identity = 65/186 (34.95%), Postives = 94/186 (50.54%), Query Frame = 3
Query:   72 LPILQYEEKIXXXXXXXXXXXXIGETGSGKSTQLSQILHRHGYT----KSGIIGVTQPXXXXXXXXXXXXXQELGVRLGEEVGYAIRFEDRTSERTLIKYLTDGVLLREILSNPDLSPYSVIILDEAHERSLNTDILLGLVKRLVNLRASKLKILITSATLDGEKVSKFFSNCPTLNVPGKLYPVE 617
            LP  +  E I             G TG GK+TQ+ Q +  +       +   I  TQP             +E   R+G  VGY IR E   S  T + Y T GVLLR +  +  L   + II+DE HER+  +D LL ++K +V  RA+ L++++ SATLD    SK+FS CP + +PG+ +PV+
Sbjct:  545 LPAWEERETILKLLSKHQVVVISGMTGCGKTTQIPQFILDNSLNGPPERVANIICTQPRRISAISVAERVAKERAERVGLTVGYQIRLESVKSSATRLLYCTTGVLLRRLEGDATLQGVTHIIVDEVHERTEESDFLLLVLKDIVMQRAT-LQVILMSATLDAGLFSKYFSYCPVITIPGRAFPVD 729          
BLAST of EY753754 vs. ExPASy Swiss-Prot
Match: UCP12_SCHPO (Putative ATP-dependent RNA helicase ucp12 OS=Schizosaccharomyces pombe GN=ucp12 PE=2 SV=1)

HSP 1 Score: 100.523 bits (249), Expect = 1.267e-20
Identity = 66/189 (34.92%), Postives = 98/189 (51.85%), Query Frame = 3
Query:   72 LPILQYEEKIXXXXXXXXXXXXIGETGSGKSTQLSQILHRHGYTKSG-----IIGVTQPXXXXXXXXXXXXXQELGVRLGEEVGYAIRFEDRTSERTLIKYLTDGVLLREILSN--PDLSPYSVIILDEAHERSLNTDILLGLVKRLVNLRASKLKILITSATLDGEKVSKFFSNCPTLNVPGKLYPVE 617
            LP  +   KI             GETGSGKSTQ+ Q +  H Y  SG      +  TQP              E    +G+EVGY++  E   S+ TL+++ T G+LLR I  +    LS  S +++DE HERS+  DILL L+K LV  R   LK+++ SAT++ +    +F N   L++ G+ +P++
Sbjct:  577 LPAWESRRKIMDAIQHSQVVVISGETGSGKSTQVVQFILDH-YLSSGEKDLQTVVCTQPRRISAISLAERVAFERDTTVGKEVGYSVHGEKSISKETLLEFCTTGLLLRRIQQHGLGFLSTLSCVVVDEVHERSIENDILLTLLK-LVISRIPNLKVILMSATVNSDTFKYYFGNAGHLHIHGRTFPIK 763          
BLAST of EY753754 vs. ExPASy Swiss-Prot
Match: DHX57_HUMAN (Putative ATP-dependent RNA helicase DHX57 OS=Homo sapiens GN=DHX57 PE=1 SV=2)

HSP 1 Score: 99.7525 bits (247), Expect = 2.161e-20
Identity = 64/187 (34.22%), Postives = 94/187 (50.27%), Query Frame = 3
Query:   69 NLPILQYEEKIXXXXXXXXXXXXIGETGSGKSTQLSQILHRHGYT----KSGIIGVTQPXXXXXXXXXXXXXQELGVRLGEEVGYAIRFEDRTSERTLIKYLTDGVLLREILSNPDLSPYSVIILDEAHERSLNTDILLGLVKRLVNLRASKLKILITSATLDGEKVSKFFSNCPTLNVPGKLYPVE 617
            +LP  +  E I             G TG GK+TQ+ Q +          K   I  TQP             +E   R+G  VGY IR E   S  T + Y T GVLLR +  +  L   S II+DE HER+  +D LL ++K +V+ R   L++++ SATL+ E  S +F++CP + +PG+ +PV+
Sbjct:  543 SLPAWEERETILNLLRKHQVVVISGMTGCGKTTQIPQFILDDSLNGPPEKVANIICTQPRRISAISVAERVAKERAERVGLTVGYQIRLESVKSSATRLLYCTTGVLLRRLEGDTALQGVSHIIVDEVHERTEESDFLLLVLKDIVSQRPG-LQVILMSATLNAELFSDYFNSCPVITIPGRTFPVD 728          
BLAST of EY753754 vs. ExPASy Swiss-Prot
Match: DHX36_MOUSE (Probable ATP-dependent RNA helicase DHX36 OS=Mus musculus GN=Dhx36 PE=2 SV=1)

HSP 1 Score: 99.3673 bits (246), Expect = 2.822e-20
Identity = 61/165 (36.97%), Postives = 92/165 (55.76%), Query Frame = 3
Query:  141 GETGSGKSTQLSQILH----RHGYTKSGIIGVTQPXXXXXXXXXXXXXQELGVRLGE--EVGYAIRFEDRTSERT-LIKYLTDGVLLREILSNPDLSPYSVIILDEAHERSLNTDILLGLVKRLVNLRASKLKILITSATLDGEKVSKFFSNCPTLNVPGKLYPV 614
            GETG GK+TQ++Q +       G   +  I  TQP              E     G     GY IR + R   +   I Y T G++L+ + S+  LS  S I+LDE HER+L +D+L+ ++K L++ R S LK+++ SATL+ EK S++F NCP +++PG  +PV
Sbjct:  223 GETGCGKTTQVTQFILDNYIERGKGSACRIVCTQPRRISAISVAERVATERAESCGNGNSTGYQIRLQSRLPRKQGSILYCTTGIILQWLQSDSRLSSVSHIVLDEIHERNLQSDVLMTVIKDLLHFR-SDLKVILMSATLNAEKFSEYFGNCPMIHIPGFTFPV 386          
BLAST of EY753754 vs. ExPASy Swiss-Prot
Match: DHX32_XENLA (Putative pre-mRNA-splicing factor ATP-dependent RNA helicase DHX32 OS=Xenopus laevis GN=dhx32 PE=2 SV=1)

HSP 1 Score: 96.2857 bits (238), Expect = 2.389e-19
Identity = 57/175 (32.57%), Postives = 94/175 (53.71%), Query Frame = 3
Query:  153 SGKSTQLSQILHRH---GYTKSGIIGVTQPXXXXXXXXXXXXXQELGVRLGEEVGYAIRFEDRTSERTLIKYLTDGVLLREILSNPDLSPYSVIILDEAHERSLNTDILLGLVKRLVNLRASKLKILITSATLDGEKVSKFFSNCPTLNVPGKLYPVEILHSKERXYSYLESALK 668
            SGKS+Q+ Q    +   G+ + G +  TQ               E+ V +G EVGY + FE+  +  T+++Y TD +L RE++SNP LS Y V+I+D+ +ER ++TD+LL  +K +   R     ++IT  +L G  VS ++ N P +      + VE +++      Y  SAL+
Sbjct:   91 SGKSSQIPQWCAEYCLAGHYQHGAVVCTQAHKQTAVWLAMRVADEMDVNIGHEVGYIVPFENCCTSETILRYCTDEMLRREMMSNPLLSSYGVVIIDDVYERFVSTDVLLSFLKVIAVSRPELKVVIITCPSLSGTLVS-YYGNAPLVEAE-NTHSVESVYTTSLPRDYFHSALR 263          
BLAST of EY753754 vs. ExPASy Swiss-Prot
Match: YG65_SCHPO (Uncharacterized helicase C15C4.05 OS=Schizosaccharomyces pombe GN=SPBC15C4.05 PE=2 SV=1)

HSP 1 Score: 95.9005 bits (237), Expect = 3.120e-19
Identity = 70/208 (33.65%), Postives = 100/208 (48.08%), Query Frame = 3
Query:   72 LPILQYEEKIXXXXXXXXXXXXIGETGSGKSTQLSQILHRHGYTKSGI---IGVTQPXXXXXXXXXXXXXQELG-----VRLGEEVGYAIRFEDRTSERTLIKYLTDGVLLREILSNPDLSPYSVIILDEAHERSLNTDILLGLVKRLVNLRASKLKILITSATLDGEKVSKFFSNCPTLNVPGKLYPVEILHSKERXYSYLESALKQ 671
            LP   + E I             G+TG GKSTQ+   L  +  TK+G    I VT+P             QELG      R  E VGY++R + + +  T + Y+T G  LR +    ++   + +I+DE HERS+++D+LL  V  L+  +   LKI+I SATL+ EK   +F     + +PGK YPV           YLE  L Q
Sbjct:  631 LPATMFRETIIDAVNNSQLLIISGDTGCGKSTQIPAFLLENS-TKNGKAVKIYVTEPRRISAISLANRVSQELGGNPPSARSHELVGYSVRLDSKCTPLTPLTYVTTGTFLRLLEVGNEIESVTHLIIDEVHERSIDSDLLLIHVLHLLK-QHPHLKIIIMSATLNAEKFQLYFEGSNLITIPGKTYPVHRF--------YLEDILSQ 828          
BLAST of EY753754 vs. ExPASy Swiss-Prot
Match: MLE_DROME (Dosage compensation regulator OS=Drosophila melanogaster GN=mle PE=1 SV=2)

HSP 1 Score: 93.2041 bits (230), Expect = 2.023e-18
Identity = 67/188 (35.64%), Postives = 97/188 (51.60%), Query Frame = 3
Query:   72 LPILQYEEKIXXXXXXXXXXXXIGETGSGKSTQLSQILHRHGYTKSGIIG-----VTQPXXXXXXXXXXXXXQELGVRLGEEVGYAIRFEDRTSERT-LIKYLTDGVLLREILSNPDLSPYSVIILDEAHERSLNTDILLGLVKRLVNLRASKLKILITSATLDGEKVSKFFSNCPTLNVPGKLYPVE 617
            LPI     +I             G TG GK+TQ++Q +    Y  SG  G     VTQP             +E   +LG+ VGY++RFE         I + T GVLLR++ +   L   S II+DE HER +N+D LL +++ +V+     L +++ SAT+D  K SK+F  CP L VPG+ +PV+
Sbjct:  384 LPIAAMRSEILTAINDNPVVIIRGNTGCGKTTQIAQYI-LDDYICSGQGGYANIYVTQPRRISAISVAERVARERCEQLGDTVGYSVRFESVFPRPYGAILFCTVGVLLRKLEAG--LRGVSHIIVDEIHERDVNSDFLLVILRDMVDTYPD-LHVILMSATIDTTKFSKYFGICPVLEVPGRAFPVQ 567          
The following BLAST results are available for this feature:
BLAST of EY753754 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 87
Match NameE-valueIdentityDescription
YTDC2_MOUSE1.954e-2132.54Probable ATP-dependent RNA helicase YTHDC2 OS=Mus ... [more]
YTDC2_HUMAN1.954e-2132.54Probable ATP-dependent RNA helicase YTHDC2 OS=Homo... [more]
YL419_YEAST7.427e-2135.58Putative ATP-dependent RNA helicase YLR419W OS=Sac... [more]
DHX57_MOUSE9.700e-2134.95Putative ATP-dependent RNA helicase DHX57 OS=Mus m... [more]
UCP12_SCHPO1.267e-2034.92Putative ATP-dependent RNA helicase ucp12 OS=Schiz... [more]
DHX57_HUMAN2.161e-2034.22Putative ATP-dependent RNA helicase DHX57 OS=Homo ... [more]
DHX36_MOUSE2.822e-2036.97Probable ATP-dependent RNA helicase DHX36 OS=Mus m... [more]
DHX32_XENLA2.389e-1932.57Putative pre-mRNA-splicing factor ATP-dependent RN... [more]
YG65_SCHPO3.120e-1933.65Uncharacterized helicase C15C4.05 OS=Schizosacchar... [more]
MLE_DROME2.023e-1835.64Dosage compensation regulator OS=Drosophila melano... [more]

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Properties
Property NameValue
Genbank descriptionCS12-C1-001-006-E07-CT.F Sweet orange leaf, field plant A Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY753754 ID=EY753754; Name=EY753754; organism=Citrus sinensis; type=EST; length=863bp
CACGATAAAATCCTAAAACCCTAATCTTGCTCGAAAGCTCCAAACCTCGA
GTTAATTGATCGATGGCGAATCTTCCGATTCTCCAATATGAAGAAAAGAT
AGTAGAAACGGTGGAGCAGAATCCAGTGGTGGTGGTTATCGGAGAGACGG
GGTCCGGCAAGAGCACGCAGCTCTCTCAGATACTCCACCGACATGGCTAC
ACCAAATCCGGAATTATTGGCGTTACTCAGCCTCGCCGAGTCGCTGCCGT
ATCCGTTGCCAGACGAGTTGCACAGGAACTTGGTGTTCGGCTTGGGGAGG
AAGTAGGTTATGCAATACGATTTGAGGATAGAACATCGGAAAGAACACTT
ATTAAATACCTTACTGATGGAGTTCTTCTTCGAGAAATTCTGTCTAATCC
AGATCTTAGTCCGTATTCAGTTATCATATTAGATGAAGCCCATGAGAGGA
GTCTCAACACGGACATATTGCTGGGTCTTGTGAAACGCTTGGTTAATTTG
CGAGCATCAAAATTAAAGATTTTGATCACGTCAGCAACTCTTGATGGTGA
AAAAGTTTCCAAGTTCTTTTCAAATTGCCCCACATTGAATGTCCCTGGAA
AGTTGTATCCTGTGGAGATATTGCACAGCAAGGAGCGTNCCTACAGCTAT
CTTGAGTCTGCTTTGAAACAGCATTTGTATACATGTTCGAGAACCAGAGG
TGACGTGTTGANTTCATGACTGGACAGATGAATTANAAAGCTAGTTTAAA
GGTAGAAGATAATTCAAAGCTGNATGAAGGTCCTGCATGATGCTGAATCC
TCCCCTCATGGNTCTTGCACCGAAAGCAGGTCGTGTATTTATCCTCCCCT
CCAATGTAGGCAT
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