EY753754

Overview
NameEY753754
Unique NameEY753754
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length863
Libraries
Library NameType
Sweet orange leaf, field plant Acdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY753754 vs. ExPASy Swiss-Prot
Match: DQX1_MOUSE (ATP-dependent RNA helicase DQX1 OS=Mus musculus GN=Dqx1 PE=2 SV=1)

HSP 1 Score: 89.7373 bits (221), Expect = 2.236e-17
Identity = 66/198 (33.33%), Postives = 101/198 (51.01%), Query Frame = 3
Query:  141 GETGSGKSTQLSQILHRHGYTK---SGIIGVTQPXXXXXXXXXXXXXQELGVRLGEEVGYAIRFEDRTSERTLIKYLTDGVLLREILSNPDLSPYSVIILDEAHERSLNTDILLGLVK--RLVNLRASKLKILITSATLDGEKVSKFFSNCPTLNVPGKLYPVEILHSKERXYSYL-ESALKQHLYTCSRTR--GDVL 710
            G+ GSGKSTQ+ Q        +   +G + VTQP              E+ + LG E+GY+I  ED T   T++++  D + L+E+ S      +SV+ILDEA ERS+ +D+L GL++  RL NL      +++T   L+  K   F+ N P + VP +      L  K+   + L E+A +  L  C +    GDVL
Sbjct:   67 GDPGSGKSTQIPQWCAEFALARGFQTGQVTVTQPYPLAAMSLASRVADEMDLTLGHEIGYSIPQEDCTGPNTMLRFCWDRLFLQEVASTRGPGAWSVLILDEAQERSVASDLLQGLLRDTRLRNLPGDPRVVVVTDPALE-PKFQAFWGNSPIVRVPREPGGDPTLAYKDTVPTDLVEAACQAVLELCQQEEAPGDVL 263          
BLAST of EY753754 vs. ExPASy Swiss-Prot
Match: DHX9_XENLA (ATP-dependent RNA helicase A-like protein OS=Xenopus laevis GN=dhx9 PE=2 SV=1)

HSP 1 Score: 89.3521 bits (220), Expect = 2.921e-17
Identity = 58/188 (30.85%), Postives = 97/188 (51.60%), Query Frame = 3
Query:   69 NLPILQYEEKIXXXXXXXXXXXXIGETGSGKSTQLSQILH----RHGYTKSGIIGVTQPXXXXXXXXXXXXXQELGVRLGEEVGYAIRFEDRTSE-RTLIKYLTDGVLLREILSNPDLSPYSVIILDEAHERSLNTDILLGLVKRLVNLRASKLKILITSATLDGEKVSKFFSNCPTLNVPGKLYPVE 617
            +LP+ ++EE+I             G TG GK+TQ+ Q +     R+       I VTQP              E G  +G+  GY++RFE         + + T GVLLR++ S   +   S +I+DE HER +NTD LL +++ ++     ++++++ SAT+D     ++F NCP + V G+ +PV+
Sbjct:  389 SLPVKKFEEEIMHAVHNSPVVIIRGATGCGKTTQVPQYILDEYIRNDRAAQCNIVVTQPRRISAVSVAERVAFERGEEIGKSCGYSVRFESVLPRPHASMLFCTVGVLLRKLESG--IRGISHVIVDEIHERDINTDFLLVVLRDVIQA-FPEIRVILMSATIDTSMFCEYFFNCPIIEVFGRTFPVQ 573          
BLAST of EY753754 vs. ExPASy Swiss-Prot
Match: YL540_MIMIV (Putative ATP-dependent RNA helicase L540 OS=Acanthamoeba polyphaga mimivirus GN=MIMI_L540 PE=1 SV=1)

HSP 1 Score: 88.1965 bits (217), Expect = 6.506e-17
Identity = 56/181 (30.94%), Postives = 104/181 (57.46%), Query Frame = 3
Query:  147 TGSGKSTQLSQI-LHRHGYTKSGIIGVTQPXXXXXXXXXXXXXQELGVRLGEEVGYAIRFEDRT--SERTLIKYLTDGVLLREILSNPDLSPYSVIILDEAHERSLNTDILLGLVKRLVNL-RASKLKILITSATLDGEKVSKFFSNCPT--LNVPGK-LYPVEILHSKERXYSYLESALK 668
            TGSGKS  + ++ LH   Y  +G + +T P             +   V+LGE +GYA +  D++  +++  I Y+TDG+ + E + +P LS ++V+I+DEAHER +  D++L  ++ L+       LK++I SAT+D +K  K+F++  +  +++ G+  +P+E     +   SY++  L+
Sbjct:   68 TGSGKSVLIPKLALHYTNY--NGRVVMTLPKRIITLSAAIFSAKVSDVKLGESIGYAYKGSDKSMYNDQNKIIYVTDGIFVMEYVRDPLLSKFNVVIIDEAHERRIQIDLILLFLRTLLQSGNRPDLKVIIMSATIDTDKYQKYFNSVDSTVIDIAGQPNHPIETHFMDKPVTSYMKEGLE 246          
BLAST of EY753754 vs. ExPASy Swiss-Prot
Match: YUM14_USTMA (Putative DEAH-box ATP-dependent helicase UM11114 OS=Ustilago maydis GN=UM11114 PE=3 SV=1)

HSP 1 Score: 87.8113 bits (216), Expect = 8.498e-17
Identity = 59/174 (33.91%), Postives = 92/174 (52.87%), Query Frame = 3
Query:  141 GETGSGKSTQLSQILHRH----GYTKSGIIGVTQPXXXXXXXXXXXXXQELGVRL---------GEEVGYAIRFEDRTSERTLIKYLTDGVLLREILS--NPDLSPYSVIILDEAHERSLNTDILLGLVKRLVNLRASKLKILITSATLDGEKVSKFFSNCPTLNVPGKLYPVE 617
            GETG GK+TQ+ Q +       G      I VTQP              E G +L         G  VGYAIR E R S    + + T GVLLR + +  + DL   S +++DE HER++++D LL  ++ L+  R S++K+++ SAT++ E  + +F   P +++PG+ + VE
Sbjct:  759 GETGCGKTTQVPQFILDEAIEAGRGSECNIVVTQPRRVSAIGVASRVAVERGEKLDGKKKAVAPGSLVGYAIRGERRASRECRLLFTTTGVLLRRLGAGGDTDLKGISHVVVDEVHERNVDSDFLLLELRELLR-RNSRIKVVLMSATINQETFASYFGKAPCISIPGRTFAVE 931          
BLAST of EY753754 vs. ExPASy Swiss-Prot
Match: HRPB_ECOLI (ATP-dependent RNA helicase hrpB OS=Escherichia coli (strain K12) GN=hrpB PE=1 SV=3)

HSP 1 Score: 87.8113 bits (216), Expect = 8.498e-17
Identity = 57/185 (30.81%), Postives = 90/185 (48.65%), Query Frame = 3
Query:   63 MANLPILQYEEKIXXXXXXXXXXXXIGETGSGKSTQLSQILHRHGYTKSGIIGVTQPXXXXXXXXXXXXXQELGVRLGEEVGYAIRFEDRTSERTLIKYLTDGVLLREILSNPDLSPYSVIILDEAHERSLNTDILLGLVKRLVNLRASKLKILITSATLDGEKVSKFFSNCPTLNVPGKLYPVE 617
            M++LP+     ++               TG+GKST L   L  H      II + +P             + L  + G+ VGY +R ++     T ++ +T+GVL R I  +P+LS   ++ILDE HERSL  D+ L L+  +       LK+LI SATLD +++ +     P +   G+ +PVE
Sbjct:    1 MSSLPVAAVLPELLTALDCAPQVLLSAPTGAGKSTWLPLQLLAHPGINGKII-LLEPRRLAARNVAQRLAELLNEKPGDTVGYRMRAQNCVGPNTRLEVVTEGVLTRMIQRDPELSGVGLVILDEFHERSLQADLALALLLDVQQGLRDDLKLLIMSATLDNDRLQQMLPEAPVVISEGRSFPVE 184          
BLAST of EY753754 vs. ExPASy Swiss-Prot
Match: DQX1_HUMAN (ATP-dependent RNA helicase DQX1 OS=Homo sapiens GN=DQX1 PE=2 SV=2)

HSP 1 Score: 87.4261 bits (215), Expect = 1.110e-16
Identity = 57/158 (36.08%), Postives = 85/158 (53.80%), Query Frame = 3
Query:  141 GETGSGKSTQLSQ----ILHRHGYTKSGIIGVTQPXXXXXXXXXXXXXQELGVRLGEEVGYAIRFEDRTSERTLIKYLTDGVLLREILSNPDLSPYSVIILDEAHERSLNTDILLGLVK--RLVNLRASKLKILITSATLDGEKVSKFFSNCPTLNVP 596
            GE GSGKSTQ+ Q         G+ K G + VTQP              E+ + LG EVGY+I  ED T   TL+++  D +LL+E+ S      + V++LDEA ERS+ +D L GL++  RL  L      +++T   L+  K+  F+ N P +++P
Sbjct:   70 GEPGSGKSTQIPQWCAEFALARGFQK-GQVTVTQPYPLAARSLALRVADEMDLTLGHEVGYSIPQEDCTGPNTLLRFCWDRLLLQEVASTRGTGAWGVLVLDEAQERSVASDSLQGLLQDARLEKLPGDLRVVVVTDPALE-PKLRAFWGNPPIVHIP 225          
BLAST of EY753754 vs. ExPASy Swiss-Prot
Match: DQX1_BOVIN (ATP-dependent RNA helicase DQX1 OS=Bos taurus GN=DQX1 PE=2 SV=1)

HSP 1 Score: 87.0409 bits (214), Expect = 1.449e-16
Identity = 61/161 (37.89%), Postives = 89/161 (55.28%), Query Frame = 3
Query:  141 GETGSGKSTQLSQ-----ILHRHGYTKSGIIGVTQPXXXXXXXXXXXXXQELGVRLGEEVGYAIRFEDRTSERTLIKYLTDGVLLREILSNPDLSPYSVIILDEAHERSLNTDILLGLVK--RLVNLRASKLKILITSATLDGEKVSKFFSNCPTLNVPGK 602
            GE G GKSTQ+ Q     +L R G+ K G + VTQP              E+ + LG EVGY+I  ED T   TL+++  D +LL+E+ S        V+ILDEA ERS+ +D+L GL++  RL +L      +++T  +L+  K+  F+   PT+ VP K
Sbjct:   70 GEPGCGKSTQIPQWCAEFVLAR-GFQK-GWVTVTQPYPLAALSLALRVADEMDLTLGHEVGYSIPQEDCTGPDTLLRFCWDRLLLQEVASTRGTGARGVLILDEAQERSVASDLLQGLLRDARLGSLPGDLRVVVVTDPSLE-PKLQDFWGGPPTVCVPRK 227          
BLAST of EY753754 vs. ExPASy Swiss-Prot
Match: TDRD9_HUMAN (Putative ATP-dependent RNA helicase TDRD9 OS=Homo sapiens GN=TDRD9 PE=2 SV=2)

HSP 1 Score: 86.2705 bits (212), Expect = 2.472e-16
Identity = 59/170 (34.71%), Postives = 89/170 (52.35%), Query Frame = 3
Query:  150 GSGKSTQLSQILHRHGYTKSGI--IGVTQPXXXXXXXXXXXXXQELGVRLGEEVGYAIRFEDRTSERTLIKYLTDGVLLREILSNPDLSPYSVIILDEAHERSLNTDILLGLVKRLVNLRASKLKILITSATLDGEKVSKFFSNCPTLNVPGKLYPVEI---LHSKERXY 644
            GSGKSTQL Q +  H   +S    I VTQP             +E    LG  VGY +  E   +E T + Y+T GVLL++I+S   L  ++ II+DE HER+   D LL +V++L+   +  +K+++ SAT+  ++ + +F+  P  N     Y  E+    HS E  Y
Sbjct:    4 GSGKSTQLPQYILDHYVQRSAYCSIVVTQPRKIGASSIARWISKERAWTLGGVVGYQVGLEKIATEDTRLIYMTTGVLLQKIVSAKSLMEFTHIIIDEVHERTEEMDFLLLVVRKLLRTNSRFVKVVLMSATISCKEFADYFA-VPVQNKMNPAYIFEVEGKPHSVEEYY 172          
BLAST of EY753754 vs. ExPASy Swiss-Prot
Match: DHX9_PONAB (ATP-dependent RNA helicase A OS=Pongo abelii GN=DHX9 PE=2 SV=1)

HSP 1 Score: 86.2705 bits (212), Expect = 2.472e-16
Identity = 59/187 (31.55%), Postives = 94/187 (50.27%), Query Frame = 3
Query:   72 LPILQYEEKIXXXXXXXXXXXXIGETGSGKSTQLSQILH----RHGYTKSGIIGVTQPXXXXXXXXXXXXXQELGVRLGEEVGYAIRFEDRTSE-RTLIKYLTDGVLLREILSNPDLSPYSVIILDEAHERSLNTDILLGLVKRLVNLRASKLKILITSATLDGEKVSKFFSNCPTLNVPGKLYPVE 617
            LP+ ++E +I             G TG GK+TQ+ Q +     ++       I VTQP              E G   G+  GY++RFE         I + T GVLLR++ +   +   S +I+DE HER +NTD LL +++ +V     +++I++ SAT+D     ++F NCP + V G+ YPV+
Sbjct:  388 LPVKKFESEILEAISQNSVVIIRGATGCGKTTQVPQFILDDFIQNDRAAECNIVVTQPRRISAVSVAERVAFERGEEPGKSCGYSVRFESILPRPHASIMFCTVGVLLRKLEAG--IRGISHVIVDEIHERDINTDFLLVVLRDVVQAYP-EVRIVLMSATIDTSMFCEYFFNCPIIEVYGRTYPVQ 571          
BLAST of EY753754 vs. ExPASy Swiss-Prot
Match: DHX9_MOUSE (ATP-dependent RNA helicase A OS=Mus musculus GN=Dhx9 PE=1 SV=2)

HSP 1 Score: 86.2705 bits (212), Expect = 2.472e-16
Identity = 61/187 (32.62%), Postives = 94/187 (50.27%), Query Frame = 3
Query:   72 LPILQYEEKIXXXXXXXXXXXXIGETGSGKSTQLSQILH----RHGYTKSGIIGVTQPXXXXXXXXXXXXXQELGVRLGEEVGYAIRFEDRTSE-RTLIKYLTDGVLLREILSNPDLSPYSVIILDEAHERSLNTDILLGLVKRLVNLRASKLKILITSATLDGEKVSKFFSNCPTLNVPGKLYPVE 617
            LP+ ++E +I             G TG GK+TQ+ Q +     ++       I VTQP              E G   G+  GY++RFE         I + T GVLLR++ +   +   S +I+DE HER +NTD LL +V R V L   +++I++ SAT+D     ++F NCP + V G+ +PV+
Sbjct:  390 LPVKKFEAEILEAISSNSVVIIRGATGCGKTTQVPQYILDDFIQNDRAAECNIVVTQPRRISAVAVAERVAYERGEEPGKSCGYSVRFESILPRPHASIMFCTVGVLLRKLEAG--IRGISHVIVDEIHERDINTDFLL-VVLRDVVLAYPEVRIVLMSATIDTTMFCEYFFNCPIIEVYGRTFPVQ 573          
The following BLAST results are available for this feature:
BLAST of EY753754 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 87
Match NameE-valueIdentityDescription
DQX1_MOUSE2.236e-1733.33ATP-dependent RNA helicase DQX1 OS=Mus musculus GN... [more]
DHX9_XENLA2.921e-1730.85ATP-dependent RNA helicase A-like protein OS=Xenop... [more]
YL540_MIMIV6.506e-1730.94Putative ATP-dependent RNA helicase L540 OS=Acanth... [more]
YUM14_USTMA8.498e-1733.91Putative DEAH-box ATP-dependent helicase UM11114 O... [more]
HRPB_ECOLI8.498e-1730.81ATP-dependent RNA helicase hrpB OS=Escherichia col... [more]
DQX1_HUMAN1.110e-1636.08ATP-dependent RNA helicase DQX1 OS=Homo sapiens GN... [more]
DQX1_BOVIN1.449e-1637.89ATP-dependent RNA helicase DQX1 OS=Bos taurus GN=D... [more]
TDRD9_HUMAN2.472e-1634.71Putative ATP-dependent RNA helicase TDRD9 OS=Homo ... [more]
DHX9_PONAB2.472e-1631.55ATP-dependent RNA helicase A OS=Pongo abelii GN=DH... [more]
DHX9_MOUSE2.472e-1632.62ATP-dependent RNA helicase A OS=Mus musculus GN=Dh... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionCS12-C1-001-006-E07-CT.F Sweet orange leaf, field plant A Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY753754 ID=EY753754; Name=EY753754; organism=Citrus sinensis; type=EST; length=863bp
CACGATAAAATCCTAAAACCCTAATCTTGCTCGAAAGCTCCAAACCTCGA
GTTAATTGATCGATGGCGAATCTTCCGATTCTCCAATATGAAGAAAAGAT
AGTAGAAACGGTGGAGCAGAATCCAGTGGTGGTGGTTATCGGAGAGACGG
GGTCCGGCAAGAGCACGCAGCTCTCTCAGATACTCCACCGACATGGCTAC
ACCAAATCCGGAATTATTGGCGTTACTCAGCCTCGCCGAGTCGCTGCCGT
ATCCGTTGCCAGACGAGTTGCACAGGAACTTGGTGTTCGGCTTGGGGAGG
AAGTAGGTTATGCAATACGATTTGAGGATAGAACATCGGAAAGAACACTT
ATTAAATACCTTACTGATGGAGTTCTTCTTCGAGAAATTCTGTCTAATCC
AGATCTTAGTCCGTATTCAGTTATCATATTAGATGAAGCCCATGAGAGGA
GTCTCAACACGGACATATTGCTGGGTCTTGTGAAACGCTTGGTTAATTTG
CGAGCATCAAAATTAAAGATTTTGATCACGTCAGCAACTCTTGATGGTGA
AAAAGTTTCCAAGTTCTTTTCAAATTGCCCCACATTGAATGTCCCTGGAA
AGTTGTATCCTGTGGAGATATTGCACAGCAAGGAGCGTNCCTACAGCTAT
CTTGAGTCTGCTTTGAAACAGCATTTGTATACATGTTCGAGAACCAGAGG
TGACGTGTTGANTTCATGACTGGACAGATGAATTANAAAGCTAGTTTAAA
GGTAGAAGATAATTCAAAGCTGNATGAAGGTCCTGCATGATGCTGAATCC
TCCCCTCATGGNTCTTGCACCGAAAGCAGGTCGTGTATTTATCCTCCCCT
CCAATGTAGGCAT
back to top